Header list of 1lm2.pdb file
Complete list - b 23 2 Bytes
HEADER ELECTRON TRANSPORT 30-APR-02 1LM2
TITLE NMR STRUCTURAL CHARACTERIZATION OF THE REDUCTION OF CHROMIUM(VI) TO
TITLE 2 CHROMIUM(III) BY CYTOCHROME C7
COMPND MOL_ID: 1;
COMPND 2 MOLECULE: CYTOCHROME C7;
COMPND 3 CHAIN: A;
COMPND 4 SYNONYM: CYTOCHROME C3, CYTOCHROME C551.5
SOURCE MOL_ID: 1;
SOURCE 2 ORGANISM_SCIENTIFIC: DESULFUROMONAS ACETOXIDANS;
SOURCE 3 ORGANISM_TAXID: 891
KEYWDS CHROMIUM, CYTOCHROME C7, ELECTRON TRANSPORT
EXPDTA SOLUTION NMR
NUMMDL 35
AUTHOR M.ASSFALG,I.BERTINI,M.BRUSCHI,C.MICHEL,P.TURANO
REVDAT 4 23-FEB-22 1LM2 1 REMARK LINK
REVDAT 3 24-FEB-09 1LM2 1 VERSN
REVDAT 2 01-APR-03 1LM2 1 JRNL
REVDAT 1 31-JUL-02 1LM2 0
JRNL AUTH M.ASSFALG,I.BERTINI,M.BRUSCHI,C.MICHEL,P.TURANO
JRNL TITL THE METAL REDUCTASE ACTIVITY OF SOME MULTIHEME CYTOCHROMES
JRNL TITL 2 C: NMR STRUCTURAL CHARACTERIZATION OF THE REDUCTION OF
JRNL TITL 3 CHROMIUM(VI) TO CHROMIUM(III) BY CYTOCHROME C(7).
JRNL REF PROC.NATL.ACAD.SCI.USA V. 99 9750 2002
JRNL REFN ISSN 0027-8424
JRNL PMID 12119407
JRNL DOI 10.1073/PNAS.152290999
REMARK 2
REMARK 2 RESOLUTION. NOT APPLICABLE.
REMARK 3
REMARK 3 REFINEMENT.
REMARK 3 PROGRAM : DYANA 1.5, DYANA 1.5
REMARK 3 AUTHORS : GUENTERT (DYANA), GUENTERT (DYANA)
REMARK 3
REMARK 3 OTHER REFINEMENT REMARKS: NULL
REMARK 4
REMARK 4 1LM2 COMPLIES WITH FORMAT V. 3.15, 01-DEC-08
REMARK 100
REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 13-MAY-02.
REMARK 100 THE DEPOSITION ID IS D_1000016073.
REMARK 210
REMARK 210 EXPERIMENTAL DETAILS
REMARK 210 EXPERIMENT TYPE : NMR
REMARK 210 TEMPERATURE (KELVIN) : 298
REMARK 210 PH : 6.5
REMARK 210 IONIC STRENGTH : 100 MM PHOSPHATE BUFFER
REMARK 210 PRESSURE : 1 ATM
REMARK 210 SAMPLE CONTENTS : 2 MM CYTOCHROME C7-CHROMIUM(III)
REMARK 210
REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D NOESY
REMARK 210 SPECTROMETER FIELD STRENGTH : 700 MHZ
REMARK 210 SPECTROMETER MODEL : DRX
REMARK 210 SPECTROMETER MANUFACTURER : BRUKER
REMARK 210
REMARK 210 STRUCTURE DETERMINATION.
REMARK 210 SOFTWARE USED : NULL
REMARK 210 METHOD USED : SIMULATED ANNEALING IN TORSION
REMARK 210 ANGLE SPACE
REMARK 210
REMARK 210 CONFORMERS, NUMBER CALCULATED : 500
REMARK 210 CONFORMERS, NUMBER SUBMITTED : 35
REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH BEST TARGET
REMARK 210 FUNCTION
REMARK 210
REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1
REMARK 210
REMARK 210 REMARK: THE PROTEIN SOLUTION WAS TITRATED BY ADDITION OF
REMARK 210 INCREASING AMOUNTS OF THE (CRO4)2- SOLUTION DIRECTLY IN THE NMR
REMARK 210 TUBE. THE (CRO4)2- SOLUTION WAS KEPT UNDER ARGON ATMOSPHERE TO
REMARK 210 AVOID THE PRESENCE OF OXYGEN IN THE NMR TUBE.
REMARK 215
REMARK 215 NMR STUDY
REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION
REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT
REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON
REMARK 215 THESE RECORDS ARE MEANINGLESS.
REMARK 300
REMARK 300 BIOMOLECULE: 1
REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM
REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN
REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON
REMARK 300 BURIED SURFACE AREA.
REMARK 350
REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN
REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE
REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS
REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND
REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN.
REMARK 350
REMARK 350 BIOMOLECULE: 1
REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC
REMARK 350 APPLY THE FOLLOWING TO CHAINS: A
REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000
REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000
REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000
REMARK 500
REMARK 500 GEOMETRY AND STEREOCHEMISTRY
REMARK 500 SUBTOPIC: CLOSE CONTACTS
REMARK 500
REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT.
REMARK 500
REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE
REMARK 500 O CYS A 26 H CYS A 29 1.48
REMARK 500 O SER A 43 H LYS A 46 1.51
REMARK 500 SG CYS A 29 HAC HEC A 98 1.54
REMARK 500 SG CYS A 62 HAB HEC A 158 1.54
REMARK 500 O ASP A 2 H HIS A 17 1.56
REMARK 500 SG CYS A 29 CAC HEC A 98 2.12
REMARK 500
REMARK 500 REMARK: NULL
REMARK 500
REMARK 500 GEOMETRY AND STEREOCHEMISTRY
REMARK 500 SUBTOPIC: TORSION ANGLES
REMARK 500
REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS:
REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER;
REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE).
REMARK 500
REMARK 500 STANDARD TABLE:
REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2)
REMARK 500
REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI-
REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400
REMARK 500
REMARK 500 M RES CSSEQI PSI PHI
REMARK 500 1 ASP A 2 -46.69 -146.25
REMARK 500 1 THR A 14 98.94 -58.29
REMARK 500 1 LEU A 24 -101.80 -60.72
REMARK 500 1 CYS A 26 -75.77 64.36
REMARK 500 1 ASP A 27 -31.48 -39.37
REMARK 500 1 THR A 33 104.72 67.40
REMARK 500 1 ALA A 35 -55.46 173.12
REMARK 500 1 ALA A 38 87.72 39.73
REMARK 500 1 ASP A 40 -66.05 -172.17
REMARK 500 1 LYS A 41 80.64 -175.50
REMARK 500 1 LYS A 42 -49.96 172.26
REMARK 500 1 LYS A 46 -162.58 -113.12
REMARK 500 1 CYS A 49 -64.99 -102.44
REMARK 500 1 LYS A 50 95.79 -56.38
REMARK 500 1 THR A 51 -58.32 171.51
REMARK 500 1 CYS A 52 62.41 -102.74
REMARK 500 1 HIS A 53 -46.11 -148.95
REMARK 500 1 LYS A 54 80.74 -61.85
REMARK 500 1 SER A 55 -50.29 169.69
REMARK 500 1 ASN A 57 -66.04 78.08
REMARK 500 1 LYS A 61 -158.99 -92.91
REMARK 500 1 CYS A 65 -71.05 -87.35
REMARK 500 1 HIS A 66 89.97 -54.58
REMARK 500 1 ILE A 67 108.11 -44.86
REMARK 500 2 ASP A 2 -28.75 158.12
REMARK 500 2 VAL A 3 129.45 -174.61
REMARK 500 2 LYS A 10 -76.04 -40.24
REMARK 500 2 GLU A 22 -33.13 -37.03
REMARK 500 2 LYS A 23 -60.39 -109.52
REMARK 500 2 LEU A 24 -76.97 -41.54
REMARK 500 2 CYS A 26 -68.08 74.19
REMARK 500 2 THR A 33 104.42 67.63
REMARK 500 2 ALA A 35 -50.15 -178.35
REMARK 500 2 LYS A 36 -172.17 -176.64
REMARK 500 2 ASP A 40 -64.10 -166.21
REMARK 500 2 LYS A 41 -117.34 -143.78
REMARK 500 2 LYS A 46 -158.46 -107.91
REMARK 500 2 CYS A 49 -73.08 -107.47
REMARK 500 2 LYS A 50 98.96 -47.24
REMARK 500 2 THR A 51 -72.81 -177.44
REMARK 500 2 HIS A 53 -48.51 -159.36
REMARK 500 2 SER A 55 -62.24 -171.55
REMARK 500 2 ASN A 56 -60.70 -97.60
REMARK 500 2 ASN A 57 -84.38 -40.81
REMARK 500 2 LYS A 61 -162.97 -110.43
REMARK 500 3 GLU A 7 42.45 -148.26
REMARK 500 3 ASN A 8 177.95 -59.91
REMARK 500 3 THR A 14 71.39 -102.75
REMARK 500 3 PHE A 15 164.45 -44.93
REMARK 500 3 ALA A 21 -30.43 -39.89
REMARK 500
REMARK 500 THIS ENTRY HAS 805 RAMACHANDRAN OUTLIERS.
REMARK 500
REMARK 500 REMARK: NULL
REMARK 620
REMARK 620 METAL COORDINATION
REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER;
REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE):
REMARK 620
REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL
REMARK 620 HEC A 98 FE
REMARK 620 N RES CSSEQI ATOM
REMARK 620 1 HIS A 17 NE2
REMARK 620 2 HEC A 98 NA 92.7
REMARK 620 3 HEC A 98 NB 78.3 91.1
REMARK 620 4 HEC A 98 NC 89.2 177.1 91.5
REMARK 620 5 HEC A 98 ND 103.4 87.9 178.1 89.5
REMARK 620 6 HIS A 30 NE2 162.5 83.7 84.7 95.1 93.6
REMARK 620 N 1 2 3 4 5
REMARK 620
REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL
REMARK 620 HEC A 128 FE
REMARK 620 N RES CSSEQI ATOM
REMARK 620 1 HIS A 20 NE2
REMARK 620 2 HEC A 128 NA 93.6
REMARK 620 3 HEC A 128 NB 100.6 91.1
REMARK 620 4 HEC A 128 NC 87.3 177.1 91.5
REMARK 620 5 HEC A 128 ND 81.1 87.9 178.0 89.5
REMARK 620 6 HIS A 53 NE2 169.8 96.5 80.6 82.6 97.8
REMARK 620 N 1 2 3 4 5
REMARK 620
REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL
REMARK 620 HEC A 158 FE
REMARK 620 N RES CSSEQI ATOM
REMARK 620 1 HIS A 45 NE2
REMARK 620 2 HEC A 158 NA 100.2
REMARK 620 3 HEC A 158 NB 91.7 91.1
REMARK 620 4 HEC A 158 NC 81.1 177.0 91.5
REMARK 620 5 HEC A 158 ND 90.1 87.9 178.1 89.5
REMARK 620 6 HIS A 66 NE2 170.5 81.1 78.9 98.0 99.4
REMARK 620 N 1 2 3 4 5
REMARK 800
REMARK 800 SITE
REMARK 800 SITE_IDENTIFIER: AC1
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE HEC A 98
REMARK 800
REMARK 800 SITE_IDENTIFIER: AC2
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE HEC A 128
REMARK 800
REMARK 800 SITE_IDENTIFIER: AC3
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE HEC A 158
REMARK 900
REMARK 900 RELATED ENTRIES
REMARK 900 RELATED ID: 1NEW RELATED DB: PDB
REMARK 900 CONTAINS THE 18 OF 35 NMR STRUCTURES OF THE FULLY OXIDIZED
REMARK 900 CYTOCHROME C7 FROM D. ACETOXIDANS
REMARK 900 RELATED ID: 2NEW RELATED DB: PDB
REMARK 900 CONTAINS THE 17 OF 35 NMR STRUCTURES OF THE FULLY OXIDIZED
REMARK 900 CYTOCHROME C7 FROM D. ACETOXIDANS
REMARK 900 RELATED ID: 1EHJ RELATED DB: PDB
REMARK 900 CONTAINS THE ENERGY MINIMIZED NMR AVERAGE STRUCTURE OF THE FULLY
REMARK 900 REDUCED CYTOCHROME C7 FROM D. ACETOXIDANS
REMARK 900 RELATED ID: 1HH5 RELATED DB: PDB
REMARK 900 CONTAINS THE X-RAY STRUCTURE OF CYTOCHROME C7 FROM D. ACETOXIDANS
DBREF 1LM2 A 1 68 UNP P00137 CYC3_DESAC 1 68
SEQRES 1 A 68 ALA ASP VAL VAL THR TYR GLU ASN LYS LYS GLY ASN VAL
SEQRES 2 A 68 THR PHE ASP HIS LYS ALA HIS ALA GLU LYS LEU GLY CYS
SEQRES 3 A 68 ASP ALA CYS HIS GLU GLY THR PRO ALA LYS ILE ALA ILE
SEQRES 4 A 68 ASP LYS LYS SER ALA HIS LYS ASP ALA CYS LYS THR CYS
SEQRES 5 A 68 HIS LYS SER ASN ASN GLY PRO THR LYS CYS GLY GLY CYS
SEQRES 6 A 68 HIS ILE LYS
HET CR A 188 1
HET HEC A 98 75
HET HEC A 128 75
HET HEC A 158 75
HETNAM CR CHROMIUM ION
HETNAM HEC HEME C
FORMUL 2 CR CR 3+
FORMUL 3 HEC 3(C34 H34 FE N4 O4)
HELIX 1 1 HIS A 17 GLU A 22 1 6
LINK SG CYS A 26 CAB HEC A 98 1555 1555 1.93
LINK SG CYS A 49 CAB HEC A 128 1555 1555 1.97
LINK SG CYS A 52 CAC HEC A 128 1555 1555 1.84
LINK SG CYS A 62 CAB HEC A 158 1555 1555 2.08
LINK SG CYS A 65 CAC HEC A 158 1555 1555 1.94
LINK NE2 HIS A 17 FE HEC A 98 1555 1555 2.10
LINK NE2 HIS A 20 FE HEC A 128 1555 1555 2.22
LINK NE2 HIS A 30 FE HEC A 98 1555 1555 1.95
LINK NE2 HIS A 45 FE HEC A 158 1555 1555 2.20
LINK NE2 HIS A 53 FE HEC A 128 1555 1555 2.20
LINK NE2 HIS A 66 FE HEC A 158 1555 1555 2.12
SITE 1 AC1 11 TYR A 6 HIS A 17 LEU A 24 CYS A 26
SITE 2 AC1 11 CYS A 29 HIS A 30 PRO A 34 ALA A 35
SITE 3 AC1 11 ILE A 37 ILE A 39 HEC A 128
SITE 1 AC2 14 VAL A 13 PHE A 15 ALA A 19 HIS A 20
SITE 2 AC2 14 LEU A 24 ALA A 28 CYS A 29 ALA A 48
SITE 3 AC2 14 CYS A 49 CYS A 52 HIS A 53 ASN A 57
SITE 4 AC2 14 CYS A 65 HEC A 98
SITE 1 AC3 14 TYR A 6 ASN A 8 LYS A 10 VAL A 13
SITE 2 AC3 14 PHE A 15 ILE A 39 ASP A 40 ALA A 44
SITE 3 AC3 14 HIS A 45 THR A 60 LYS A 61 CYS A 62
SITE 4 AC3 14 CYS A 65 HIS A 66
CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 1.000000 0.000000 0.000000 0.00000
SCALE2 0.000000 1.000000 0.000000 0.00000
SCALE3 0.000000 0.000000 1.000000 0.00000
MODEL 1
Complete list - b 23 2 Bytes