Header list of 1l3g.pdb file
Complete list - b 23 2 Bytes
HEADER CELL CYCLE 27-FEB-02 1L3G
TITLE NMR STRUCTURE OF THE DNA-BINDING DOMAIN OF CELL CYCLE PROTEIN, MBP1(2-
TITLE 2 124) FROM SACCHAROMYCES CEREVISIAE
COMPND MOL_ID: 1;
COMPND 2 MOLECULE: TRANSCRIPTION FACTOR MBP1;
COMPND 3 CHAIN: A;
COMPND 4 FRAGMENT: DNA-BINDING DOMAIN (RESIDUES 2-124);
COMPND 5 ENGINEERED: YES;
COMPND 6 OTHER_DETAILS: MLU 1 CELL CYCLE BOX BINDING PROTEIN
SOURCE MOL_ID: 1;
SOURCE 2 ORGANISM_SCIENTIFIC: SACCHAROMYCES CEREVISIAE;
SOURCE 3 ORGANISM_COMMON: BAKER'S YEAST;
SOURCE 4 ORGANISM_TAXID: 4932;
SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3);
SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008;
SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21/DE3
KEYWDS CELL CYCLE, MLU 1 CELL CYCLE BOX BINDING PROTEIN, WINGED HELIX-TURN-
KEYWDS 2 HELIX PROTEINS
EXPDTA SOLUTION NMR
NUMMDL 19
AUTHOR M.NAIR,P.B.MCINTOSH,T.A.FRENKIEL,G.KELLY,I.A.TAYLOR,S.J.SMERDON,
AUTHOR 2 A.N.LANE
REVDAT 3 23-FEB-22 1L3G 1 REMARK SEQADV
REVDAT 2 24-FEB-09 1L3G 1 VERSN
REVDAT 1 18-FEB-03 1L3G 0
JRNL AUTH M.NAIR,P.B.MCINTOSH,T.A.FRENKIEL,G.KELLY,I.A.TAYLOR,
JRNL AUTH 2 S.J.SMERDON,A.N.LANE
JRNL TITL NMR STRUCTURE OF THE DNA-BINDING DOMAIN OF THE CELL CYCLE
JRNL TITL 2 PROTEIN MBP1 FROM SACCHAROMYCES CEREVISIAE
JRNL REF BIOCHEMISTRY V. 42 1266 2003
JRNL REFN ISSN 0006-2960
JRNL PMID 12564929
JRNL DOI 10.1021/BI0205247
REMARK 2
REMARK 2 RESOLUTION. NOT APPLICABLE.
REMARK 3
REMARK 3 REFINEMENT.
REMARK 3 PROGRAM : DYANA 1.5, X-PLOR 3.8
REMARK 3 AUTHORS : GUNTERT (DYANA), BRUNGER (X-PLOR)
REMARK 3
REMARK 3 OTHER REFINEMENT REMARKS:
REMARK 3 13 C-TERMINAL TAG RESIDUES (KLAAALEHHHHHH)
REMARK 3 WERE EXCLUDED FROM STRUCTURE CALCULATIONS.
REMARK 4
REMARK 4 1L3G COMPLIES WITH FORMAT V. 3.15, 01-DEC-08
REMARK 100
REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 01-MAR-02.
REMARK 100 THE DEPOSITION ID IS D_1000015606.
REMARK 210
REMARK 210 EXPERIMENTAL DETAILS
REMARK 210 EXPERIMENT TYPE : NMR
REMARK 210 TEMPERATURE (KELVIN) : 288
REMARK 210 PH : 7.6
REMARK 210 IONIC STRENGTH : NULL
REMARK 210 PRESSURE : NULL
REMARK 210 SAMPLE CONTENTS : MBP1 U-15N,13C 40MM NA
REMARK 210 -PHOSPHATE, 100MM NACL; MBP1 U-
REMARK 210 15N, 40MM NA-PHOSPHATE, 100MM
REMARK 210 NACL
REMARK 210
REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D_15N-SEPARATED_NOESY; 3D_13C
REMARK 210 -SEPARATED_NOESY; HNHA
REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ; 500 MHZ
REMARK 210 SPECTROMETER MODEL : INOVA; UNITY; UNITYPLUS
REMARK 210 SPECTROMETER MANUFACTURER : VARIAN
REMARK 210
REMARK 210 STRUCTURE DETERMINATION.
REMARK 210 SOFTWARE USED : NMRPIPE 1.8, VNMR 6.1B, TALOS
REMARK 210 98.040.21.02
REMARK 210 METHOD USED : SIMULATED ANNEALING, ENERGY
REMARK 210 MINIMIZATION
REMARK 210
REMARK 210 CONFORMERS, NUMBER CALCULATED : 1000
REMARK 210 CONFORMERS, NUMBER SUBMITTED : 19
REMARK 210 CONFORMERS, SELECTION CRITERIA : A TOTAL OF 1000 CONFORMERS
REMARK 210 CALCULATED. 100 CONFORMERS WITH
REMARK 210 LOW TARGET FUNCTION SELECTED FOR
REMARK 210 REFINEMENT. FINAL SET COMPRISES
REMARK 210 19 CONFORMERS WITH LEAST
REMARK 210 RESTRAINT VIOLATION.
REMARK 210
REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 9
REMARK 210
REMARK 210 REMARK: 2D J-MODULATED HSQC EXPERIMENTS WERE RECORDED ON
REMARK 210 PARTIALLY ALIGNED U15N LABELLED SAMPLE TO
REMARK 210 MEASURE RESIDUAL DIPOLAR COUPLINGS
REMARK 215
REMARK 215 NMR STUDY
REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION
REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT
REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON
REMARK 215 THESE RECORDS ARE MEANINGLESS.
REMARK 300
REMARK 300 BIOMOLECULE: 1
REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM
REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN
REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON
REMARK 300 BURIED SURFACE AREA.
REMARK 350
REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN
REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE
REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS
REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND
REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN.
REMARK 350
REMARK 350 BIOMOLECULE: 1
REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC
REMARK 350 APPLY THE FOLLOWING TO CHAINS: A
REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000
REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000
REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000
REMARK 465
REMARK 465 MISSING RESIDUES
REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE
REMARK 465 EXPERIMENT. (RES=RESIDUE NAME; C=CHAIN IDENTIFIER;
REMARK 465 SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.)
REMARK 465 MODELS 1-19
REMARK 465 RES C SSSEQI
REMARK 465 LYS A 125
REMARK 465 LEU A 126
REMARK 465 ALA A 127
REMARK 465 ALA A 128
REMARK 465 ALA A 129
REMARK 465 LEU A 130
REMARK 465 GLU A 131
REMARK 465 HIS A 132
REMARK 465 HIS A 133
REMARK 465 HIS A 134
REMARK 465 HIS A 135
REMARK 465 HIS A 136
REMARK 465 HIS A 137
REMARK 500
REMARK 500 GEOMETRY AND STEREOCHEMISTRY
REMARK 500 SUBTOPIC: CLOSE CONTACTS
REMARK 500
REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT.
REMARK 500
REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE
REMARK 500 OE1 GLN A 4 HH TYR A 6 0.99
REMARK 500 O PHE A 45 HE ARG A 50 1.02
REMARK 500 H ALA A 36 O THR A 76 1.26
REMARK 500 H VAL A 34 O VAL A 78 1.29
REMARK 500 O ALA A 36 H LEU A 40 1.31
REMARK 500 O VAL A 34 H VAL A 78 1.36
REMARK 500 O PRO A 79 H ALA A 83 1.36
REMARK 500 O LEU A 54 H VAL A 58 1.39
REMARK 500 H HIS A 20 O GLY A 23 1.45
REMARK 500 O ASN A 44 HH21 ARG A 50 1.45
REMARK 500 O ARG A 52 H LYS A 56 1.50
REMARK 500 O TYR A 16 HA MET A 26 1.52
REMARK 500 HA ILE A 19 O GLY A 23 1.52
REMARK 500 O ASP A 32 HB2 LEU A 80 1.54
REMARK 500 O SER A 2 HB2 PRO A 98 1.54
REMARK 500 O ASP A 94 HG3 LYS A 97 1.54
REMARK 500 O PRO A 115 HD1 HIS A 117 1.55
REMARK 500 OG SER A 21 HA ALA A 42 1.55
REMARK 500 HG2 LYS A 27 O TRP A 33 1.56
REMARK 500 O SER A 21 HZ2 LYS A 41 1.58
REMARK 500 OG1 THR A 22 HD2 LYS A 41 1.58
REMARK 500 O VAL A 34 HA TRP A 77 1.58
REMARK 500 HE22 GLN A 4 OH TYR A 6 1.59
REMARK 500 O GLU A 55 HB3 LEU A 59 1.60
REMARK 500 O PHE A 18 H ILE A 25 1.60
REMARK 500 OE1 GLN A 4 OH TYR A 6 1.72
REMARK 500 O LEU A 40 OD1 ASN A 44 1.74
REMARK 500 O SER A 21 NZ LYS A 41 1.83
REMARK 500 OE1 GLN A 74 CE2 TRP A 77 1.88
REMARK 500 O LEU A 40 CG ASN A 44 1.88
REMARK 500 OG1 THR A 62 CG PRO A 79 1.88
REMARK 500 OE1 GLN A 74 CZ2 TRP A 77 1.89
REMARK 500 O SER A 2 CZ PHE A 18 1.90
REMARK 500 OG1 THR A 62 CD PRO A 79 1.91
REMARK 500 O VAL A 34 N VAL A 78 1.92
REMARK 500 O GLU A 55 CB LEU A 59 1.92
REMARK 500 O LEU A 40 ND2 ASN A 44 1.93
REMARK 500 CG ASN A 35 O GLN A 74 1.97
REMARK 500 O PHE A 45 NE ARG A 50 1.97
REMARK 500 CG1 VAL A 66 NE2 GLN A 74 1.98
REMARK 500 N GLN A 4 CZ PHE A 18 1.99
REMARK 500 N ALA A 36 O THR A 76 2.02
REMARK 500 O TYR A 16 O ILE A 25 2.02
REMARK 500 OD1 ASN A 35 O GLN A 74 2.06
REMARK 500 OG1 THR A 105 OG SER A 110 2.07
REMARK 500 NE2 GLN A 4 OH TYR A 6 2.09
REMARK 500 N VAL A 34 O VAL A 78 2.12
REMARK 500 N HIS A 20 O GLY A 23 2.14
REMARK 500 OE1 GLN A 74 CH2 TRP A 77 2.16
REMARK 500 O LEU A 59 CE1 HIS A 63 2.16
REMARK 500
REMARK 500 THIS ENTRY HAS 1204 CLOSE CONTACTS
REMARK 500
REMARK 500 REMARK: NULL
REMARK 500
REMARK 500 GEOMETRY AND STEREOCHEMISTRY
REMARK 500 SUBTOPIC: TORSION ANGLES
REMARK 500
REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS:
REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER;
REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE).
REMARK 500
REMARK 500 STANDARD TABLE:
REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2)
REMARK 500
REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI-
REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400
REMARK 500
REMARK 500 M RES CSSEQI PSI PHI
REMARK 500 1 GLN A 4 95.31 -60.59
REMARK 500 1 HIS A 20 -137.58 -150.49
REMARK 500 1 PHE A 45 158.02 58.42
REMARK 500 1 ARG A 52 -63.24 -94.37
REMARK 500 1 THR A 62 69.38 19.66
REMARK 500 1 LYS A 89 -103.66 -67.58
REMARK 500 1 SER A 91 -111.29 -75.35
REMARK 500 1 TYR A 93 -29.86 -29.71
REMARK 500 1 PHE A 102 126.15 80.68
REMARK 500 1 ASP A 106 23.12 -60.92
REMARK 500 1 ALA A 109 118.97 -30.07
REMARK 500 1 PRO A 113 -160.94 -56.46
REMARK 500 1 ALA A 114 171.75 -29.99
REMARK 500 2 GLN A 4 96.32 -62.61
REMARK 500 2 HIS A 20 -141.36 -150.09
REMARK 500 2 ASP A 32 48.34 128.36
REMARK 500 2 ASN A 35 99.19 -67.02
REMARK 500 2 ASN A 44 17.62 -148.07
REMARK 500 2 PHE A 45 157.00 46.61
REMARK 500 2 ARG A 52 -71.34 -89.82
REMARK 500 2 GLU A 61 -148.85 -111.77
REMARK 500 2 THR A 62 57.08 -99.61
REMARK 500 2 THR A 76 71.49 -100.35
REMARK 500 2 GLU A 88 -23.42 -36.27
REMARK 500 2 LYS A 89 -99.86 -69.13
REMARK 500 2 SER A 91 -84.11 -71.71
REMARK 500 2 TYR A 93 -27.85 -39.41
REMARK 500 2 LEU A 96 31.16 -74.21
REMARK 500 2 PHE A 102 150.58 -2.17
REMARK 500 2 ASP A 106 22.81 -73.90
REMARK 500 2 ALA A 109 154.04 -29.77
REMARK 500 2 PRO A 113 -122.21 -56.07
REMARK 500 2 ALA A 114 171.54 -47.51
REMARK 500 2 ALA A 120 168.51 -45.36
REMARK 500 3 HIS A 20 -141.75 -150.48
REMARK 500 3 ASN A 35 99.08 -64.88
REMARK 500 3 ALA A 36 -28.51 -37.48
REMARK 500 3 PHE A 45 152.52 54.19
REMARK 500 3 ARG A 52 -68.72 -91.28
REMARK 500 3 GLU A 61 -75.98 -74.07
REMARK 500 3 THR A 62 17.33 -155.48
REMARK 500 3 THR A 76 74.95 -103.26
REMARK 500 3 LYS A 89 -103.84 -67.66
REMARK 500 3 SER A 91 -106.64 -75.47
REMARK 500 3 TYR A 93 -30.47 -29.73
REMARK 500 3 PHE A 102 114.94 161.51
REMARK 500 3 ALA A 109 116.65 -32.32
REMARK 500 3 LYS A 116 104.42 -29.96
REMARK 500 4 GLN A 4 -175.53 -62.39
REMARK 500 4 HIS A 20 -140.76 -150.23
REMARK 500
REMARK 500 THIS ENTRY HAS 323 RAMACHANDRAN OUTLIERS.
REMARK 500
REMARK 500 REMARK: NULL
REMARK 900
REMARK 900 RELATED ENTRIES
REMARK 900 RELATED ID: 4254 RELATED DB: BMRB
REMARK 900 BMRB 4254 IS THE NMR CHEMICAL SHIFT DEPOSITION
DBREF 1L3G A 2 124 UNP P39678 MBP1_YEAST 2 124
SEQADV 1L3G LYS A 125 UNP P39678 EXPRESSION TAG
SEQADV 1L3G LEU A 126 UNP P39678 EXPRESSION TAG
SEQADV 1L3G ALA A 127 UNP P39678 EXPRESSION TAG
SEQADV 1L3G ALA A 128 UNP P39678 EXPRESSION TAG
SEQADV 1L3G ALA A 129 UNP P39678 EXPRESSION TAG
SEQADV 1L3G LEU A 130 UNP P39678 EXPRESSION TAG
SEQADV 1L3G GLU A 131 UNP P39678 EXPRESSION TAG
SEQADV 1L3G HIS A 132 UNP P39678 EXPRESSION TAG
SEQADV 1L3G HIS A 133 UNP P39678 EXPRESSION TAG
SEQADV 1L3G HIS A 134 UNP P39678 EXPRESSION TAG
SEQADV 1L3G HIS A 135 UNP P39678 EXPRESSION TAG
SEQADV 1L3G HIS A 136 UNP P39678 EXPRESSION TAG
SEQADV 1L3G HIS A 137 UNP P39678 EXPRESSION TAG
SEQRES 1 A 136 SER ASN GLN ILE TYR SER ALA ARG TYR SER GLY VAL ASP
SEQRES 2 A 136 VAL TYR GLU PHE ILE HIS SER THR GLY SER ILE MET LYS
SEQRES 3 A 136 ARG LYS LYS ASP ASP TRP VAL ASN ALA THR HIS ILE LEU
SEQRES 4 A 136 LYS ALA ALA ASN PHE ALA LYS ALA LYS ARG THR ARG ILE
SEQRES 5 A 136 LEU GLU LYS GLU VAL LEU LYS GLU THR HIS GLU LYS VAL
SEQRES 6 A 136 GLN GLY GLY PHE GLY LYS TYR GLN GLY THR TRP VAL PRO
SEQRES 7 A 136 LEU ASN ILE ALA LYS GLN LEU ALA GLU LYS PHE SER VAL
SEQRES 8 A 136 TYR ASP GLN LEU LYS PRO LEU PHE ASP PHE THR GLN THR
SEQRES 9 A 136 ASP GLY SER ALA SER PRO PRO PRO ALA PRO LYS HIS HIS
SEQRES 10 A 136 HIS ALA SER LYS VAL ASP LYS LEU ALA ALA ALA LEU GLU
SEQRES 11 A 136 HIS HIS HIS HIS HIS HIS
HELIX 1 1 ALA A 36 LEU A 40 1 5
HELIX 2 2 LEU A 40 PHE A 45 1 6
HELIX 3 3 LYS A 47 LEU A 59 1 13
HELIX 4 4 LEU A 80 SER A 91 1 12
HELIX 5 5 LEU A 96 PHE A 102 1 7
SHEET 1 A 3 TYR A 6 TYR A 10 0
SHEET 2 A 3 VAL A 13 HIS A 20 -1 O VAL A 15 N ALA A 8
SHEET 3 A 3 GLY A 23 ILE A 25 -1 O GLY A 23 N HIS A 20
SHEET 1 B 3 TRP A 33 ASN A 35 0
SHEET 2 B 3 THR A 76 PRO A 79 -1 O VAL A 78 N VAL A 34
SHEET 3 B 3 GLU A 64 LYS A 65 -1 N GLU A 64 O TRP A 77
CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 1.000000 0.000000 0.000000 0.00000
SCALE2 0.000000 1.000000 0.000000 0.00000
SCALE3 0.000000 0.000000 1.000000 0.00000
MODEL 1
Complete list - b 23 2 Bytes