Header list of 1kp7.pdb file
Complete list - 23 202 Bytes
HEADER RNA 29-DEC-01 1KP7
TITLE CONSERVED RNA STRUCTURE WITHIN THE HCV IRES EIF3 BINDING SITE
COMPND MOL_ID: 1;
COMPND 2 MOLECULE: HEPATITIS C VIRUS INTERNAL RIBOSOME ENTRY SITE FRAGMENT;
COMPND 3 CHAIN: A;
COMPND 4 ENGINEERED: YES;
COMPND 5 OTHER_DETAILS: SUB-DOMAIN IIIB FRAGMENT
SOURCE MOL_ID: 1;
SOURCE 2 SYNTHETIC: YES;
SOURCE 3 OTHER_DETAILS: T7 POLYMERASE RNA SYNTHESIS
KEYWDS CYTOSINE MISMATCH, EIF3, HCV, INTERNAL LOOP, IRES, S-TURN, RNA
EXPDTA SOLUTION NMR
AUTHOR J.GALLEGO,R.KLINCK,A.J.COLLIER,P.T.COLE,S.J.HARRIS,G.P.HARRISON,
AUTHOR 2 F.ABOUL-ELA,S.WALKER,G.VARANI
REVDAT 5 23-FEB-22 1KP7 1 REMARK
REVDAT 4 24-FEB-09 1KP7 1 VERSN
REVDAT 3 01-APR-03 1KP7 1 JRNL
REVDAT 2 01-MAY-02 1KP7 1 JRNL
REVDAT 1 10-APR-02 1KP7 0
JRNL AUTH A.J.COLLIER,J.GALLEGO,R.KLINCK,P.T.COLE,S.J.HARRIS,
JRNL AUTH 2 G.P.HARRISON,F.ABOUL-ELA,G.VARANI,S.WALKER
JRNL TITL A CONSERVED RNA STRUCTURE WITHIN THE HCV IRES EIF3-BINDING
JRNL TITL 2 SITE.
JRNL REF NAT.STRUCT.BIOL. V. 9 375 2002
JRNL REFN ISSN 1072-8368
JRNL PMID 11927954
REMARK 2
REMARK 2 RESOLUTION. NOT APPLICABLE.
REMARK 3
REMARK 3 REFINEMENT.
REMARK 3 PROGRAM : X-PLOR 3.851, X-PLOR 3.851
REMARK 3 AUTHORS : BRUNGER, A.T. (X-PLOR), BRUNGER, A.T. (X-PLOR)
REMARK 3
REMARK 3 OTHER REFINEMENT REMARKS: NULL
REMARK 4
REMARK 4 1KP7 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11
REMARK 100
REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 02-JAN-02.
REMARK 100 THE DEPOSITION ID IS D_1000015193.
REMARK 210
REMARK 210 EXPERIMENTAL DETAILS
REMARK 210 EXPERIMENT TYPE : NMR
REMARK 210 TEMPERATURE (KELVIN) : 298
REMARK 210 PH : 6
REMARK 210 IONIC STRENGTH : 10 MM SODIUM PHOSPHATE
REMARK 210 PRESSURE : AMBIENT
REMARK 210 SAMPLE CONTENTS : 1.4 MM RNA, 10MM SODIUM
REMARK 210 PHOSPHATE BUFFER, 0.1MM EDTA;
REMARK 210 0.9 MM U-15N,13C RNA, 10MM
REMARK 210 SODIUM PHOSPHATE BUFFER, 0.1MM
REMARK 210 EDTA
REMARK 210
REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D NOESY, DQF-COSY, TOCSY, H-P
REMARK 210 HETCOR; 3D C-EDITED NOESY, HCCH
REMARK 210 COSY, HCP, C-EDITED H-P HETCOR,
REMARK 210 C-EDITED TOCSY
REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ; 500 MHZ; 800 MHZ
REMARK 210 SPECTROMETER MODEL : DMX; DRX; AVANCE
REMARK 210 SPECTROMETER MANUFACTURER : BRUKER
REMARK 210
REMARK 210 STRUCTURE DETERMINATION.
REMARK 210 SOFTWARE USED : NULL
REMARK 210 METHOD USED : SIMULATED ANNEALING
REMARK 210
REMARK 210 CONFORMERS, NUMBER CALCULATED : 26
REMARK 210 CONFORMERS, NUMBER SUBMITTED : 1
REMARK 210 CONFORMERS, SELECTION CRITERIA : ENERGY-MINIMIZED AVERAGE OF 26
REMARK 210 CONVERGED CONFORMERS WITH LOW
REMARK 210 ENERGY AND LOW RESTRAINT
REMARK 210 VIOLATIONS
REMARK 210
REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : NULL
REMARK 210
REMARK 210 REMARK: NULL
REMARK 215
REMARK 215 NMR STUDY
REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION
REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT
REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON
REMARK 215 THESE RECORDS ARE MEANINGLESS.
REMARK 300
REMARK 300 BIOMOLECULE: 1
REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM
REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN
REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON
REMARK 300 BURIED SURFACE AREA.
REMARK 350
REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN
REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE
REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS
REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND
REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN.
REMARK 350
REMARK 350 BIOMOLECULE: 1
REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC
REMARK 350 APPLY THE FOLLOWING TO CHAINS: A
REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000
REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000
REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000
REMARK 500
REMARK 500 GEOMETRY AND STEREOCHEMISTRY
REMARK 500 SUBTOPIC: COVALENT BOND ANGLES
REMARK 500
REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES
REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE
REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN
REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE).
REMARK 500
REMARK 500 STANDARD TABLE:
REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1)
REMARK 500
REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999
REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996
REMARK 500
REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3
REMARK 500 G A 1 N7 - C8 - N9 ANGL. DEV. = 4.7 DEGREES
REMARK 500 G A 1 C8 - N9 - C4 ANGL. DEV. = -2.7 DEGREES
REMARK 500 G A 2 N7 - C8 - N9 ANGL. DEV. = 4.5 DEGREES
REMARK 500 G A 2 C8 - N9 - C4 ANGL. DEV. = -2.7 DEGREES
REMARK 500 G A 4 N7 - C8 - N9 ANGL. DEV. = 4.5 DEGREES
REMARK 500 G A 4 C8 - N9 - C4 ANGL. DEV. = -2.7 DEGREES
REMARK 500 A A 8 N7 - C8 - N9 ANGL. DEV. = 3.7 DEGREES
REMARK 500 A A 9 N7 - C8 - N9 ANGL. DEV. = 3.8 DEGREES
REMARK 500 G A 11 N7 - C8 - N9 ANGL. DEV. = 4.6 DEGREES
REMARK 500 G A 11 C8 - N9 - C4 ANGL. DEV. = -2.5 DEGREES
REMARK 500 G A 18 N7 - C8 - N9 ANGL. DEV. = 4.6 DEGREES
REMARK 500 G A 18 C8 - N9 - C4 ANGL. DEV. = -2.8 DEGREES
REMARK 500 G A 19 N7 - C8 - N9 ANGL. DEV. = 4.7 DEGREES
REMARK 500 G A 19 C8 - N9 - C4 ANGL. DEV. = -2.8 DEGREES
REMARK 500 A A 20 N7 - C8 - N9 ANGL. DEV. = 3.8 DEGREES
REMARK 500 G A 21 N7 - C8 - N9 ANGL. DEV. = 4.6 DEGREES
REMARK 500 G A 21 C8 - N9 - C4 ANGL. DEV. = -2.7 DEGREES
REMARK 500 A A 22 N7 - C8 - N9 ANGL. DEV. = 3.7 DEGREES
REMARK 500 G A 24 N7 - C8 - N9 ANGL. DEV. = 4.5 DEGREES
REMARK 500 G A 24 C8 - N9 - C4 ANGL. DEV. = -2.6 DEGREES
REMARK 500 A A 25 N7 - C8 - N9 ANGL. DEV. = 3.7 DEGREES
REMARK 500 G A 28 N7 - C8 - N9 ANGL. DEV. = 4.7 DEGREES
REMARK 500 G A 28 C8 - N9 - C4 ANGL. DEV. = -2.7 DEGREES
REMARK 500
REMARK 500 REMARK: NULL
DBREF 1KP7 A 1 30 PDB 1KP7 1KP7 1 30
SEQRES 1 A 30 G G C G C U C A A U G C U
SEQRES 2 A 30 C U U C G G A G A C G A C
SEQRES 3 A 30 C G C C
CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 1.000000 0.000000 0.000000 0.00000
SCALE2 0.000000 1.000000 0.000000 0.00000
SCALE3 0.000000 0.000000 1.000000 0.00000
Complete list - 23 202 Bytes