Header list of 1k1g.pdb file
Complete list - b 23 2 Bytes
HEADER GENE REGULATION/RNA 25-SEP-01 1K1G
TITLE STRUCTURAL BASIS FOR RECOGNITION OF THE INTRON BRANCH SITE RNA BY
TITLE 2 SPLICING FACTOR 1
COMPND MOL_ID: 1;
COMPND 2 MOLECULE: 5'-R(*UP*AP*UP*AP*CP*UP*AP*AP*CP*AP*A)-3';
COMPND 3 CHAIN: B;
COMPND 4 ENGINEERED: YES;
COMPND 5 OTHER_DETAILS: YEAST AND MAMMALIAN CONSENSUS BPS SEQUENCE;
COMPND 6 MOL_ID: 2;
COMPND 7 MOLECULE: SF1-BO ISOFORM;
COMPND 8 CHAIN: A;
COMPND 9 FRAGMENT: RESIDUES 133-260, KH-QUA2 REGION;
COMPND 10 SYNONYM: SPLICING FACTOR 1;
COMPND 11 ENGINEERED: YES
SOURCE MOL_ID: 1;
SOURCE 2 SYNTHETIC: YES;
SOURCE 3 MOL_ID: 2;
SOURCE 4 ORGANISM_SCIENTIFIC: HOMO SAPIENS;
SOURCE 5 ORGANISM_COMMON: HUMAN;
SOURCE 6 ORGANISM_TAXID: 9606;
SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3);
SOURCE 8 EXPRESSION_SYSTEM_TAXID: 469008;
SOURCE 9 EXPRESSION_SYSTEM_STRAIN: BL21 DE3;
SOURCE 10 EXPRESSION_SYSTEM_PLASMID: MODIFIED PET24D
KEYWDS SPLICING, BRANCH POINT SEQUENCE, PROTEIN/RNA RECOGNITION, COMPLEX E,
KEYWDS 2 KH DOMAIN, QUA2 HOMOLOGY, STAR PROTEINS, GENE REGULATION-RNA COMPLEX
EXPDTA SOLUTION NMR
NUMMDL 10
AUTHOR Z.LIU,I.LUYTEN,M.J.BOTTOMLEY,A.C.MESSIAS,S.HOUNGNINOU-MOLANGO,
AUTHOR 2 R.SPRANGERS,K.ZANIER,A.KRAMER,M.SATTLER
REVDAT 3 23-FEB-22 1K1G 1 REMARK SEQADV
REVDAT 2 24-FEB-09 1K1G 1 VERSN
REVDAT 1 07-NOV-01 1K1G 0
JRNL AUTH Z.LIU,I.LUYTEN,M.J.BOTTOMLEY,A.C.MESSIAS,
JRNL AUTH 2 S.HOUNGNINOU-MOLANGO,R.SPRANGERS,K.ZANIER,A.KRAMER,M.SATTLER
JRNL TITL STRUCTURAL BASIS FOR RECOGNITION OF THE INTRON BRANCH SITE
JRNL TITL 2 RNA BY SPLICING FACTOR 1.
JRNL REF SCIENCE V. 294 1098 2001
JRNL REFN ISSN 0036-8075
JRNL PMID 11691992
JRNL DOI 10.1126/SCIENCE.1064719
REMARK 2
REMARK 2 RESOLUTION. NOT APPLICABLE.
REMARK 3
REMARK 3 REFINEMENT.
REMARK 3 PROGRAM : XWINNMR 2.6, ARIA/CNS 1.0
REMARK 3 AUTHORS : BRUKER (XWINNMR), J. LINGE, M. NILGES (ARIA/CNS)
REMARK 3
REMARK 3 OTHER REFINEMENT REMARKS:
REMARK 3 STRUCTURES WERE CALCULATED WITH A MIXED TORSION AND CARTESIAN ANGLE
REMARK 3 DYNAMICS PROTOCOL USING ARIA/CNS. A REDUCED RELAXATION MATRIX
REMARK 3 APPROACH
REMARK 3 WAS USED FOR THE NOE CALIBRATION. THE STRUCTURES ARE CURRENTLY
REMARK 3 BEING
REMARK 3 REFINED USING RESIDUAL DIPOLAR COUPLINGS AND WILL BE UPDATED IN THE
REMARK 3 FUTURE.
REMARK 4
REMARK 4 1K1G COMPLIES WITH FORMAT V. 3.15, 01-DEC-08
REMARK 100
REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 01-OCT-01.
REMARK 100 THE DEPOSITION ID IS D_1000014440.
REMARK 210
REMARK 210 EXPERIMENTAL DETAILS
REMARK 210 EXPERIMENT TYPE : NMR
REMARK 210 TEMPERATURE (KELVIN) : 295; 278
REMARK 210 PH : 6.5; 6.5
REMARK 210 IONIC STRENGTH : 50 MM NACL; 50 MM NACL
REMARK 210 PRESSURE : AMBIENT; AMBIENT
REMARK 210 SAMPLE CONTENTS : 1 MM U-15N,13C SF1 KH
REMARK 210 -QUA2/UNLABELED BPS IN 20 MM
REMARK 210 PHOSPHATE BUFFER NA PH 6.5, 50
REMARK 210 MM NACL, 2 MM DTT; 1 MM U-15N,
REMARK 210 13C SF1 KH-QUA2/UNLABELED BPS IN
REMARK 210 20 MM PHOSPHATE BUFFER NA PH 6.5,
REMARK 210 50 MM NACL, 2 MM DTT; 1 MM U-
REMARK 210 15N SF1 KH-QUA2/UNLABELED BPS IN
REMARK 210 20 MM PHOSPHATE BUFFER NA PH 6.5,
REMARK 210 50 MM NACL, 2 MM DTT
REMARK 210
REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D_13C-SEPARATED_NOESY;
REMARK 210 3D_13C/15N_EDITED/FILTERED_NOESY; 3D_15N-SEPARATED_NOESY
REMARK 210 SPECTROMETER FIELD STRENGTH : 500 MHZ; 600 MHZ; 800 MHZ
REMARK 210 SPECTROMETER MODEL : DRX
REMARK 210 SPECTROMETER MANUFACTURER : BRUKER
REMARK 210
REMARK 210 STRUCTURE DETERMINATION.
REMARK 210 SOFTWARE USED : NMRPIPE 1.8, XEASY 1.2, ARIA/CNS
REMARK 210 1.0
REMARK 210 METHOD USED : RESTRAINED MOLECULAR DYNAMICS,
REMARK 210 SIMULATED ANNEALING
REMARK 210
REMARK 210 CONFORMERS, NUMBER CALCULATED : 100
REMARK 210 CONFORMERS, NUMBER SUBMITTED : 10
REMARK 210 CONFORMERS, SELECTION CRITERIA : 10 LOWEST ENERGY STRUCTURES
REMARK 210 CONSISTENT WITH EXPERIMENTAL
REMARK 210 DISTANCE AND DIHEDRAL ANGLE
REMARK 210 RESTRAINTS
REMARK 210
REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1
REMARK 210
REMARK 210 REMARK: BACKBONE AND SIDE CHAIN 1H, 15N AND 13C RESONANCES WERE
REMARK 210 ASSIGNED USING STANDARD TRIPLE RESONANCE EXPERIMENTS. DISTANCE
REMARK 210 RESTRAINTS WERE DERIVED FROM 13C- AND 15N-EDITED 3D NOESY
REMARK 210 EXPERIMENTS. ASSIGNMENTS FOR THE RNA WERE OBTAINED FROM 2D
REMARK 210 ISOTOPE-FILTERED EXPERIMENTS. INTERMOLECULAR DISTANCE RESTRAINTS
REMARK 210 WERE MEASURED IN 3D 13C-EDITED/FILTERED EXPERIMENTS. DIHEDRAL
REMARK 210 ANGLE RESTRAINTS FOR THE BACKBONE ANGLE PHI WERE DERIVED FROM
REMARK 210 3J(HN,HA) COUPLING CONSTANTS MEASURED IN AN HNHA-J EXPERIMENT,
REMARK 210 ADDITIONAL PHI/PSI RESTRAINTS WERE DERIVED FROM TALOS. HYDROGEN
REMARK 210 BOND RESTRAINTS FOR SECONDARY STRUCTURE ELEMENTS IN THE PROTEIN
REMARK 210 WERE DEFINED FROM SLOWLY EXCHANGING AMIDE PROTONS, IDENTIFIED
REMARK 210 AFTER EXCHANGE OF THE H2O BUFFER TO D2O.
REMARK 215
REMARK 215 NMR STUDY
REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION
REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT
REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON
REMARK 215 THESE RECORDS ARE MEANINGLESS.
REMARK 300
REMARK 300 BIOMOLECULE: 1
REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM
REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN
REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON
REMARK 300 BURIED SURFACE AREA.
REMARK 350
REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN
REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE
REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS
REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND
REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN.
REMARK 350
REMARK 350 BIOMOLECULE: 1
REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC
REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, A
REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000
REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000
REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000
REMARK 465
REMARK 465 MISSING RESIDUES
REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE
REMARK 465 EXPERIMENT. (RES=RESIDUE NAME; C=CHAIN IDENTIFIER;
REMARK 465 SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.)
REMARK 465 MODELS 1-10
REMARK 465 RES C SSSEQI
REMARK 465 GLY A 130
REMARK 465 ALA A 131
REMARK 465 MET A 132
REMARK 465 ALA A 133
REMARK 465 GLU A 256
REMARK 465 ASP A 257
REMARK 465 ASP A 258
REMARK 465 ASN A 259
REMARK 465 ARG A 260
REMARK 500
REMARK 500 GEOMETRY AND STEREOCHEMISTRY
REMARK 500 SUBTOPIC: CLOSE CONTACTS
REMARK 500
REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT.
REMARK 500
REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE
REMARK 500
REMARK 500 REMARK: NULL
REMARK 500
REMARK 500 GEOMETRY AND STEREOCHEMISTRY
REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS
REMARK 500
REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES
REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE
REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN
REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE).
REMARK 500
REMARK 500 STANDARD TABLE:
REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3)
REMARK 500
REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999
REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996
REMARK 500
REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION
REMARK 500 1 A B 504 C2' A B 504 C1' -0.049
REMARK 500 2 A B 504 C2' A B 504 C1' -0.049
REMARK 500 5 A B 504 C2' A B 504 C1' -0.048
REMARK 500 7 A B 504 C2' A B 504 C1' -0.054
REMARK 500 8 A B 504 C2' A B 504 C1' -0.049
REMARK 500
REMARK 500 REMARK: NULL
REMARK 500
REMARK 500 GEOMETRY AND STEREOCHEMISTRY
REMARK 500 SUBTOPIC: TORSION ANGLES
REMARK 500
REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS:
REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER;
REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE).
REMARK 500
REMARK 500 STANDARD TABLE:
REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2)
REMARK 500
REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI-
REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400
REMARK 500
REMARK 500 M RES CSSEQI PSI PHI
REMARK 500 1 ASP A 138 109.01 -166.84
REMARK 500 1 PRO A 143 70.55 -68.04
REMARK 500 1 GLU A 146 -57.10 -122.77
REMARK 500 1 GLU A 149 -13.46 -164.84
REMARK 500 1 ILE A 150 -135.39 14.40
REMARK 500 1 ILE A 157 -68.40 -91.90
REMARK 500 1 ARG A 160 -44.02 78.64
REMARK 500 1 GLU A 170 -76.61 -79.71
REMARK 500 1 LYS A 180 -89.19 -61.27
REMARK 500 1 SER A 182 -47.61 -132.45
REMARK 500 1 LYS A 187 -160.94 -102.31
REMARK 500 1 ASP A 200 -75.73 -105.97
REMARK 500 1 PRO A 202 -73.22 -65.39
REMARK 500 1 LEU A 203 86.53 177.53
REMARK 500 1 ALA A 209 -161.42 -174.90
REMARK 500 1 THR A 232 150.75 -43.57
REMARK 500 1 PRO A 233 -175.34 -60.24
REMARK 500 1 GLN A 236 -84.48 -127.52
REMARK 500 1 ASN A 237 -49.30 74.22
REMARK 500 2 PRO A 148 -95.51 -50.93
REMARK 500 2 ILE A 150 -137.91 19.76
REMARK 500 2 ILE A 157 -66.19 -95.59
REMARK 500 2 ARG A 160 -42.12 79.40
REMARK 500 2 GLU A 170 -76.66 -81.83
REMARK 500 2 SER A 182 -86.94 -120.64
REMARK 500 2 LYS A 184 101.35 -58.44
REMARK 500 2 GLU A 185 -14.05 -165.96
REMARK 500 2 ARG A 190 -66.47 -98.42
REMARK 500 2 GLU A 199 -38.85 -160.85
REMARK 500 2 LEU A 203 102.13 176.29
REMARK 500 2 THR A 232 164.51 -49.99
REMARK 500 2 PRO A 233 143.49 -36.62
REMARK 500 2 GLN A 236 -86.29 -154.93
REMARK 500 2 ASN A 237 -86.01 59.03
REMARK 500 2 LYS A 241 9.33 -64.65
REMARK 500 3 PRO A 143 74.95 -68.45
REMARK 500 3 GLU A 146 -57.04 -129.73
REMARK 500 3 GLU A 149 -10.35 -168.51
REMARK 500 3 ILE A 150 -141.45 18.26
REMARK 500 3 ILE A 157 -69.01 -92.29
REMARK 500 3 ARG A 160 -48.27 80.19
REMARK 500 3 GLU A 170 -77.08 -75.73
REMARK 500 3 LYS A 180 90.04 -69.31
REMARK 500 3 SER A 182 -86.04 -121.68
REMARK 500 3 GLU A 185 15.32 -174.29
REMARK 500 3 LYS A 191 -164.07 53.57
REMARK 500 3 PRO A 197 171.32 -56.61
REMARK 500 3 PRO A 202 -70.57 -72.95
REMARK 500 3 LEU A 203 96.20 -178.85
REMARK 500 3 THR A 232 152.59 -48.09
REMARK 500
REMARK 500 THIS ENTRY HAS 184 RAMACHANDRAN OUTLIERS.
REMARK 500
REMARK 500 REMARK: NULL
DBREF 1K1G A 133 260 UNP Q15637 SF01_HUMAN 133 260
DBREF 1K1G B 501 511 PDB 1K1G 1K1G 501 511
SEQADV 1K1G GLY A 130 UNP Q15637 LYS 130 CLONING ARTIFACT
SEQADV 1K1G ALA A 131 UNP Q15637 PRO 131 CLONING ARTIFACT
SEQADV 1K1G MET A 132 UNP Q15637 PRO 132 CLONING ARTIFACT
SEQRES 1 B 11 U A U A C U A A C A A
SEQRES 1 A 131 GLY ALA MET ALA THR ARG VAL SER ASP LYS VAL MET ILE
SEQRES 2 A 131 PRO GLN ASP GLU TYR PRO GLU ILE ASN PHE VAL GLY LEU
SEQRES 3 A 131 LEU ILE GLY PRO ARG GLY ASN THR LEU LYS ASN ILE GLU
SEQRES 4 A 131 LYS GLU CYS ASN ALA LYS ILE MET ILE ARG GLY LYS GLY
SEQRES 5 A 131 SER VAL LYS GLU GLY LYS VAL GLY ARG LYS ASP GLY GLN
SEQRES 6 A 131 MET LEU PRO GLY GLU ASP GLU PRO LEU HIS ALA LEU VAL
SEQRES 7 A 131 THR ALA ASN THR MET GLU ASN VAL LYS LYS ALA VAL GLU
SEQRES 8 A 131 GLN ILE ARG ASN ILE LEU LYS GLN GLY ILE GLU THR PRO
SEQRES 9 A 131 GLU ASP GLN ASN ASP LEU ARG LYS MET GLN LEU ARG GLU
SEQRES 10 A 131 LEU ALA ARG LEU ASN GLY THR LEU ARG GLU ASP ASP ASN
SEQRES 11 A 131 ARG
HELIX 1 1 GLU A 149 GLY A 158 1 10
HELIX 2 2 GLY A 161 CYS A 171 1 11
HELIX 3 3 THR A 211 LYS A 227 1 17
HELIX 4 4 ASN A 237 GLN A 243 5 7
HELIX 5 5 LEU A 244 ARG A 249 1 6
SHEET 1 A 3 VAL A 136 MET A 141 0
SHEET 2 A 3 LEU A 203 ALA A 209 -1 O ALA A 209 N VAL A 136
SHEET 3 A 3 LYS A 174 GLY A 179 -1 N ARG A 178 O HIS A 204
CRYST1 1
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 1.000000 0.000000 0.000000 0.00000
SCALE2 0.000000 1.000000 0.000000 0.00000
SCALE3 0.000000 0.000000 1.000000 0.00000
MODEL 1
Complete list - b 23 2 Bytes