Header list of 1jzc.pdb file
Complete list - 23 202 Bytes
HEADER RNA 14-SEP-01 1JZC
TITLE THE SOLUTION STRUCTURE OF THE MUTANT 5'AUG3' TRILOOP IN THE RNA
TITLE 2 PROMOTER REGION OF THE BROME MOSAIC VIRUS GENOMIC (+)-RNA
COMPND MOL_ID: 1;
COMPND 2 MOLECULE: 5'-R(*GP*GP*UP*GP*CP*AP*UP*GP*GP*CP*AP*CP*C)-3';
COMPND 3 CHAIN: A;
COMPND 4 ENGINEERED: YES;
COMPND 5 OTHER_DETAILS: MUTANT RNA TRILOOP 5'AUG3'OF THE RNA PROMOTER REGION
SOURCE MOL_ID: 1;
SOURCE 2 SYNTHETIC: YES;
SOURCE 3 OTHER_DETAILS: THIS SEQUENCE IS A MUTANT TRILOOP OF WHICH THE WILD
SOURCE 4 TYPE IS NATURALLY OCCURING IN BROME MOSAIC VIRUS GENOMIC RNA
KEYWDS RNA, BROME MOSAIC VIRUS, BMV, TRILOOP, REPLICATION, PROMOTER, RNA
KEYWDS 2 POLYMERASE
EXPDTA SOLUTION NMR
MDLTYP MINIMIZED AVERAGE
AUTHOR C.-H.KIM,C.C.KAO
REVDAT 3 23-FEB-22 1JZC 1 REMARK
REVDAT 2 24-FEB-09 1JZC 1 VERSN
REVDAT 1 07-OCT-03 1JZC 0
JRNL AUTH C.-H.KIM,C.C.KAO
JRNL TITL A MUTANT VIRAL RNA PROMOTER WITH AN ALTERED CONFORMATION
JRNL TITL 2 RETAINS EFFICIENT RECOGNITION BY A VIRAL RNA REPLICASE
JRNL TITL 3 THROUGH A SOLUTION-EXPOSED ADENINE
JRNL REF RNA V. 7 1476 2001
JRNL REFN ISSN 1355-8382
JRNL PMID 11680852
REMARK 1
REMARK 1 REFERENCE 1
REMARK 1 AUTH C.-H.KIM,C.C.KAO,I.TINOCO JR.
REMARK 1 TITL RNA MOTIFS THAT DETERMINE SPECIFICITY BETWEEN A VIRAL
REMARK 1 TITL 2 REPLICASE AND ITS PROMOTER
REMARK 1 REF NAT.STRUCT.BIOL. V. 7 415 2000
REMARK 1 REFN ISSN 1072-8368
REMARK 1 DOI 10.1038/75202
REMARK 1 REFERENCE 2
REMARK 1 AUTH C.-H.KIM,I.TINOCO JR.
REMARK 1 TITL STRUCTURAL AND THERMODYNAMIC STUDIES ON MUTANT RNA MOTIFS
REMARK 1 TITL 2 THAT IMPAIR THE SPECIFICITY BETWEEN A VIRAL REPLICASE AND
REMARK 1 TITL 3 ITS PROMOTER
REMARK 1 REF J.MOL.BIOL. V. 307 827 2001
REMARK 1 REFN ISSN 0022-2836
REMARK 1 DOI 10.1006/JMBI.2001.4497
REMARK 2
REMARK 2 RESOLUTION. NOT APPLICABLE.
REMARK 3
REMARK 3 REFINEMENT.
REMARK 3 PROGRAM : X-PLOR 3.1, X-PLOR 3.1
REMARK 3 AUTHORS : AXEL BRUNGER (X-PLOR), AXEL BRUNGER (X-PLOR)
REMARK 3
REMARK 3 OTHER REFINEMENT REMARKS: NULL
REMARK 4
REMARK 4 1JZC COMPLIES WITH FORMAT V. 3.30, 13-JUL-11
REMARK 100
REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 26-SEP-01.
REMARK 100 THE DEPOSITION ID IS D_1000014364.
REMARK 210
REMARK 210 EXPERIMENTAL DETAILS
REMARK 210 EXPERIMENT TYPE : NMR
REMARK 210 TEMPERATURE (KELVIN) : 293; 283
REMARK 210 PH : 6.5; 6.5
REMARK 210 IONIC STRENGTH : 10 MM NACL; 10 MM NACL
REMARK 210 PRESSURE : AMBIENT; AMBIENT
REMARK 210 SAMPLE CONTENTS : 2 MM RNA TRILOOP 13MER, 10MM NA
REMARK 210 PHOSPHATE, PH=6.5; 2 MM RNA
REMARK 210 TRILOOP 13MER, 10MM NA PHOSPHATE,
REMARK 210 PH=6.5
REMARK 210
REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D NOESY; DQF-COSY
REMARK 210 SPECTROMETER FIELD STRENGTH : 500 MHZ; 600 MHZ
REMARK 210 SPECTROMETER MODEL : DRX; AMX
REMARK 210 SPECTROMETER MANUFACTURER : BRUKER
REMARK 210
REMARK 210 STRUCTURE DETERMINATION.
REMARK 210 SOFTWARE USED : XWINNMR, UXNMR, FELIX
REMARK 210 METHOD USED : SIMULATED ANNEALING RESTRAINED
REMARK 210 MOLECULAR DYNAMICS
REMARK 210
REMARK 210 CONFORMERS, NUMBER CALCULATED : 17
REMARK 210 CONFORMERS, NUMBER SUBMITTED : 1
REMARK 210 CONFORMERS, SELECTION CRITERIA : A STRUCUTRE AVERAGED OVER THESE
REMARK 210 17 CALCULATED STRUCTURES.
REMARK 210
REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : NULL
REMARK 210
REMARK 210 REMARK: NULL
REMARK 215
REMARK 215 NMR STUDY
REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION
REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT
REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON
REMARK 215 THESE RECORDS ARE MEANINGLESS.
REMARK 300
REMARK 300 BIOMOLECULE: 1
REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM
REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN
REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON
REMARK 300 BURIED SURFACE AREA.
REMARK 350
REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN
REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE
REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS
REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND
REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN.
REMARK 350
REMARK 350 BIOMOLECULE: 1
REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC
REMARK 350 APPLY THE FOLLOWING TO CHAINS: A
REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000
REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000
REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000
REMARK 900
REMARK 900 RELATED ENTRIES
REMARK 900 RELATED ID: 1ESH RELATED DB: PDB
REMARK 900 THE SOLUTION STRUCTURE OF THE STEM-TRILOOP IN THE RNA PROMOTER
REMARK 900 REGION OF THE BROME MOSAIC VIRUS GENOMIC (+)-RNA
REMARK 900 RELATED ID: 1I46 RELATED DB: PDB
REMARK 900 THE SOLUTION STRUCTURE OF THE MUTANT STEM-TRILOOP IN THE RNA
REMARK 900 PROMOTER REGION OF THE BROME MOSAIC VIRUS GENOMIC (+)-RNA
REMARK 900 RELATED ID: 1I4B RELATED DB: PDB
REMARK 900 THE SOLUTION STRUCTURE OF THE MUTANT STEM-TRILOOP IN THE RNA
REMARK 900 PROMOTER REGION OF THE BROME MOSAIC VIRUS GENOMIC (+)-RNA
REMARK 900 RELATED ID: 1I4C RELATED DB: PDB
REMARK 900 THE SOLUTION STRUCTURE OF THE MUTANT STEM-TRILOOP IN THE RNA
REMARK 900 PROMOTER REGION OF THE BROME MOSAIC VIRUS GENOMIC (+)-RNA
DBREF 1JZC A 1 13 PDB 1JZC 1JZC 1 13
SEQRES 1 A 13 G G U G C A U G G C A C C
CRYST1 1
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 1.000000 0.000000 0.000000 0.00000
SCALE2 0.000000 1.000000 0.000000 0.00000
SCALE3 0.000000 0.000000 1.000000 0.00000
Complete list - 23 202 Bytes