Header list of 1iyy.pdb file
Complete list - l 25 2 Bytes
HEADER HYDROLASE 12-SEP-02 1IYY
TITLE NMR STRUCTURE OF GLN25-RIBONUCLEASE T1, 24 STRUCTURES
COMPND MOL_ID: 1;
COMPND 2 MOLECULE: RIBONUCLEASE T1;
COMPND 3 CHAIN: A;
COMPND 4 SYNONYM: GUANYLORIBONUCLEASE, RNASE T1;
COMPND 5 EC: 3.1.27.3;
COMPND 6 ENGINEERED: YES;
COMPND 7 MUTATION: YES
SOURCE MOL_ID: 1;
SOURCE 2 ORGANISM_SCIENTIFIC: ASPERGILLUS ORYZAE;
SOURCE 3 ORGANISM_COMMON: YELLOW KOJI MOLD;
SOURCE 4 ORGANISM_TAXID: 5062;
SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI;
SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562
KEYWDS RIBONUCLEASE, ENDONUCLEASE, ENDORIBONUCLEASE, HYDROLASE
EXPDTA SOLUTION NMR
NUMMDL 24
AUTHOR K.HATANO,M.KOJIMA,E.SUZUKI,M.TANOKURA,K.TAKAHASHI
REVDAT 3 25-JUL-18 1IYY 1 COMPND SOURCE JRNL REMARK
REVDAT 3 2 1 DBREF SEQADV
REVDAT 2 24-FEB-09 1IYY 1 VERSN
REVDAT 1 07-OCT-03 1IYY 0
JRNL AUTH K.HATANO,M.KOJIMA,E.SUZUKI,M.TANOKURA,K.TAKAHASHI
JRNL TITL DETERMINATION OF THE NMR STRUCTURE OF GLN25-RIBONUCLEASE T1.
JRNL REF BIOL. CHEM. V. 384 1173 2003
JRNL REFN ISSN 1431-6730
JRNL PMID 12974386
JRNL DOI 10.1515/BC.2003.130
REMARK 1
REMARK 1 REFERENCE 1
REMARK 1 AUTH M.KOJIMA,H.MIYANO,E.SUZUKI,M.TANOKURA,K.TAKAHASHI
REMARK 1 TITL EFFECTS OF REPLACEMENT OF LYS25 WITH GLN ON THE CONFORMATION
REMARK 1 TITL 2 OF RIBONUCLEASE T1: SEQUENCE-SPECIFIC 1H NMR RESONANCE
REMARK 1 TITL 3 ASSIGNMENTS OF GLN25 RIBONUCLEASE T1 BY TWO-DIMENSIONAL NMR
REMARK 1 TITL 4 SPECTROSCOPY.
REMARK 1 REF J. BIOCHEM. V. 118 710 1995
REMARK 1 REFN ISSN 0021-924X
REMARK 1 PMID 8576083
REMARK 2
REMARK 2 RESOLUTION. NOT APPLICABLE.
REMARK 3
REMARK 3 REFINEMENT.
REMARK 3 PROGRAM : X-PLOR 3.1
REMARK 3 AUTHORS : BRUNGER
REMARK 3
REMARK 3 OTHER REFINEMENT REMARKS: NULL
REMARK 4
REMARK 4 1IYY COMPLIES WITH FORMAT V. 3.15, 01-DEC-08
REMARK 100
REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 17-SEP-02.
REMARK 100 THE DEPOSITION ID IS D_1000005422.
REMARK 210
REMARK 210 EXPERIMENTAL DETAILS
REMARK 210 EXPERIMENT TYPE : NMR
REMARK 210 TEMPERATURE (KELVIN) : 313
REMARK 210 PH : 5.5
REMARK 210 IONIC STRENGTH : NULL
REMARK 210 PRESSURE : 1 ATM
REMARK 210 SAMPLE CONTENTS : 2MM RIBONUCLEASE T1
REMARK 210
REMARK 210 NMR EXPERIMENTS CONDUCTED : NULL
REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ
REMARK 210 SPECTROMETER MODEL : AMX
REMARK 210 SPECTROMETER MANUFACTURER : BRUKER
REMARK 210
REMARK 210 STRUCTURE DETERMINATION.
REMARK 210 SOFTWARE USED : X-PLOR 3.1
REMARK 210 METHOD USED : DISTANCE GEOMETRY AND SIMULATED
REMARK 210 ANNEALING
REMARK 210
REMARK 210 CONFORMERS, NUMBER CALCULATED : 50
REMARK 210 CONFORMERS, NUMBER SUBMITTED : 24
REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST
REMARK 210 ENERGY
REMARK 210
REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : NULL
REMARK 210
REMARK 210 REMARK: STRUCTURES WERE REFINED BY 1340 NOES (392 INTRARESIDUE,
REMARK 210 384 SEQUENTIAL AND 564 LONG-RANGE NOES) USING A DG/SA PROTOCOL.
REMARK 210 37 ASSIGNMENTS FOR 14 CHI-1 ANGLE, 21 PHI ANGLE AND 2 OMEGA
REMARK 210 ANGLE CONSTRAINTS WERE INCLUDED DURING THE COURSE OF THE
REMARK 210 REFINEMENT.
REMARK 215
REMARK 215 NMR STUDY
REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION
REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT
REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON
REMARK 215 THESE RECORDS ARE MEANINGLESS.
REMARK 300
REMARK 300 BIOMOLECULE: 1
REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM
REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN
REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON
REMARK 300 BURIED SURFACE AREA.
REMARK 350
REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN
REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE
REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS
REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND
REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN.
REMARK 350
REMARK 350 BIOMOLECULE: 1
REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC
REMARK 350 APPLY THE FOLLOWING TO CHAINS: A
REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000
REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000
REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000
REMARK 500
REMARK 500 GEOMETRY AND STEREOCHEMISTRY
REMARK 500 SUBTOPIC: TORSION ANGLES
REMARK 500
REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS:
REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER;
REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE).
REMARK 500
REMARK 500 STANDARD TABLE:
REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2)
REMARK 500
REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI-
REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400
REMARK 500
REMARK 500 M RES CSSEQI PSI PHI
REMARK 500 1 CYS A 2 94.20 38.93
REMARK 500 1 TYR A 4 65.73 -115.07
REMARK 500 1 SER A 8 43.84 70.44
REMARK 500 1 CYS A 10 88.26 -54.90
REMARK 500 1 GLU A 31 -154.81 -63.01
REMARK 500 1 SER A 35 32.61 171.04
REMARK 500 1 ASN A 36 25.29 -152.64
REMARK 500 1 SER A 37 92.75 47.95
REMARK 500 1 ASN A 44 135.59 77.20
REMARK 500 1 TYR A 45 -38.11 -159.50
REMARK 500 1 GLU A 46 -73.02 -38.72
REMARK 500 1 ASP A 49 26.59 -145.05
REMARK 500 1 PHE A 50 173.08 -45.60
REMARK 500 1 SER A 51 30.30 -146.53
REMARK 500 1 VAL A 52 -92.13 -96.28
REMARK 500 1 SER A 64 -54.20 -148.25
REMARK 500 1 ASP A 66 -162.84 175.49
REMARK 500 1 SER A 69 74.14 -177.19
REMARK 500 1 SER A 72 101.63 -166.29
REMARK 500 1 PRO A 73 -81.71 -77.82
REMARK 500 1 ALA A 75 -122.03 56.47
REMARK 500 1 ARG A 77 90.12 -176.37
REMARK 500 1 ASN A 81 -81.15 -124.07
REMARK 500 1 GLU A 82 21.55 -158.74
REMARK 500 1 ASN A 83 23.89 -140.39
REMARK 500 1 ASN A 84 19.92 52.83
REMARK 500 1 GLN A 85 -111.75 -60.62
REMARK 500 1 LEU A 86 110.16 172.84
REMARK 500 1 HIS A 92 66.05 -116.76
REMARK 500 1 THR A 93 -29.65 178.42
REMARK 500 1 ASN A 98 41.66 34.71
REMARK 500 2 CYS A 2 137.25 173.27
REMARK 500 2 CYS A 6 14.98 -143.98
REMARK 500 2 TYR A 24 -70.65 -72.11
REMARK 500 2 VAL A 33 -126.36 -100.30
REMARK 500 2 SER A 35 -34.88 163.99
REMARK 500 2 SER A 37 121.78 69.29
REMARK 500 2 ASN A 43 21.66 -74.77
REMARK 500 2 ASN A 44 148.63 60.42
REMARK 500 2 TYR A 45 -57.85 -174.39
REMARK 500 2 ASP A 49 44.90 -150.49
REMARK 500 2 SER A 51 56.68 -153.22
REMARK 500 2 SER A 53 162.90 167.55
REMARK 500 2 SER A 69 20.36 -155.91
REMARK 500 2 ALA A 75 -174.06 51.01
REMARK 500 2 ASP A 76 143.16 -37.89
REMARK 500 2 GLU A 82 -21.54 161.21
REMARK 500 2 GLN A 85 -160.32 -60.66
REMARK 500 2 THR A 93 -28.56 177.36
REMARK 500 2 SER A 96 157.02 -40.95
REMARK 500
REMARK 500 THIS ENTRY HAS 584 RAMACHANDRAN OUTLIERS.
REMARK 500
REMARK 500 REMARK: NULL
REMARK 500
REMARK 500 GEOMETRY AND STEREOCHEMISTRY
REMARK 500 SUBTOPIC: PLANAR GROUPS
REMARK 500
REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL
REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE
REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN
REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS
REMARK 500 AN RMSD GREATER THAN THIS VALUE
REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER;
REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE).
REMARK 500
REMARK 500 M RES CSSEQI RMS TYPE
REMARK 500 1 ARG A 77 0.30 SIDE CHAIN
REMARK 500 2 ARG A 77 0.31 SIDE CHAIN
REMARK 500 4 ARG A 77 0.28 SIDE CHAIN
REMARK 500 5 ARG A 77 0.11 SIDE CHAIN
REMARK 500 6 ARG A 77 0.27 SIDE CHAIN
REMARK 500 7 ARG A 77 0.10 SIDE CHAIN
REMARK 500 9 ARG A 77 0.12 SIDE CHAIN
REMARK 500 10 ARG A 77 0.25 SIDE CHAIN
REMARK 500 11 ARG A 77 0.30 SIDE CHAIN
REMARK 500 12 ARG A 77 0.11 SIDE CHAIN
REMARK 500 13 ARG A 77 0.30 SIDE CHAIN
REMARK 500 14 ARG A 77 0.15 SIDE CHAIN
REMARK 500 15 ARG A 77 0.29 SIDE CHAIN
REMARK 500 16 ARG A 77 0.32 SIDE CHAIN
REMARK 500 17 ARG A 77 0.19 SIDE CHAIN
REMARK 500 18 ARG A 77 0.32 SIDE CHAIN
REMARK 500 19 ARG A 77 0.31 SIDE CHAIN
REMARK 500 20 ARG A 77 0.30 SIDE CHAIN
REMARK 500 21 ARG A 77 0.29 SIDE CHAIN
REMARK 500 22 ARG A 77 0.14 SIDE CHAIN
REMARK 500 23 ARG A 77 0.28 SIDE CHAIN
REMARK 500 24 ARG A 77 0.31 SIDE CHAIN
REMARK 500
REMARK 500 REMARK: NULL
REMARK 900
REMARK 900 RELATED ENTRIES
REMARK 900 RELATED ID: 1YGW RELATED DB: PDB
REMARK 900 1YGW CONTAINS NMR STRUCTURE OF THE ISOZYME, 34 STRUCTURES
DBREF 1IYY A 1 104 UNP A2NUJ9 A2NUJ9_ASPOZ 1 104
SEQADV 1IYY GLN A 25 UNP A2NUJ9 LYS 25 ENGINEERED MUTATION
SEQRES 1 A 104 ALA CYS ASP TYR THR CYS GLY SER ASN CYS TYR SER SER
SEQRES 2 A 104 SER ASP VAL SER THR ALA GLN ALA ALA GLY TYR GLN LEU
SEQRES 3 A 104 HIS GLU ASP GLY GLU THR VAL GLY SER ASN SER TYR PRO
SEQRES 4 A 104 HIS LYS TYR ASN ASN TYR GLU GLY PHE ASP PHE SER VAL
SEQRES 5 A 104 SER SER PRO TYR TYR GLU TRP PRO ILE LEU SER SER GLY
SEQRES 6 A 104 ASP VAL TYR SER GLY GLY SER PRO GLY ALA ASP ARG VAL
SEQRES 7 A 104 VAL PHE ASN GLU ASN ASN GLN LEU ALA GLY VAL ILE THR
SEQRES 8 A 104 HIS THR GLY ALA SER GLY ASN ASN PHE VAL GLU CYS THR
HELIX 1 1 SER A 12 GLY A 30 1 19
HELIX 2 2 ALA A 95 ASN A 99 5 5
SHEET 1 A 2 TYR A 4 CYS A 6 0
SHEET 2 A 2 ASN A 9 TYR A 11 -1 O TYR A 11 N TYR A 4
SHEET 1 B 3 TYR A 57 GLU A 58 0
SHEET 2 B 3 ARG A 77 PHE A 80 -1 O PHE A 80 N TYR A 57
SHEET 3 B 3 GLY A 88 ILE A 90 -1 O GLY A 88 N VAL A 79
SSBOND 1 CYS A 2 CYS A 10 1555 1555 2.02
SSBOND 2 CYS A 6 CYS A 103 1555 1555 2.02
CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 1.000000 0.000000 0.000000 0.00000
SCALE2 0.000000 1.000000 0.000000 0.00000
SCALE3 0.000000 0.000000 1.000000 0.00000
MODEL 1
Complete list - l 25 2 Bytes