Header list of 1iqt.pdb file
Complete list - n 27 2 Bytes
HEADER RNA BINDING PROTEIN 01-AUG-01 1IQT
TITLE SOLUTION STRUCTURE OF THE C-TERMINAL RNA-BINDING DOMAIN OF
TITLE 2 HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN D0 (AUF1)
COMPND MOL_ID: 1;
COMPND 2 MOLECULE: HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN D0;
COMPND 3 CHAIN: A;
COMPND 4 FRAGMENT: C-TERMINAL DOMAIN;
COMPND 5 SYNONYM: AUF1;
COMPND 6 ENGINEERED: YES
SOURCE MOL_ID: 1;
SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS;
SOURCE 3 ORGANISM_COMMON: HUMAN;
SOURCE 4 ORGANISM_TAXID: 9606;
SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3);
SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008;
SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3);
SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID;
SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET3A
KEYWDS RNA-BINDING PROTEIN, HNRNP, AUF1, TELOMERE, DNA-BINDING PROTEIN, RNA
KEYWDS 2 BINDING PROTEIN
EXPDTA SOLUTION NMR
NUMMDL 20
AUTHOR M.KATAHIRA,Y.MIYANOIRI,Y.ENOKIZONO,G.MATSUDA,T.NAGATA,F.ISHIKAWA,
AUTHOR 2 S.UESUGI
REVDAT 3 27-JUN-18 1IQT 1 JRNL REMARK ATOM
REVDAT 2 24-FEB-09 1IQT 1 VERSN
REVDAT 1 07-AUG-02 1IQT 0
JRNL AUTH M.KATAHIRA,Y.MIYANOIRI,Y.ENOKIZONO,G.MATSUDA,T.NAGATA,
JRNL AUTH 2 F.ISHIKAWA,S.UESUGI
JRNL TITL STRUCTURE OF THE C-TERMINAL RNA-BINDING DOMAIN OF HNRNP D0
JRNL TITL 2 (AUF1), ITS INTERACTIONS WITH RNA AND DNA, AND CHANGE IN
JRNL TITL 3 BACKBONE DYNAMICS UPON COMPLEX FORMATION WITH DNA.
JRNL REF J.MOL.BIOL. V. 311 973 2001
JRNL REFN ISSN 0022-2836
JRNL PMID 11531333
JRNL DOI 10.1006/JMBI.2001.4862
REMARK 1
REMARK 1 REFERENCE 1
REMARK 1 AUTH T.NAGATA,Y.KURIHARA,G.MATSUDA,J.SAEKI,T.KOHNO,Y.YANAGIDA,
REMARK 1 AUTH 2 F.ISHIKAWA,S.UESUGI,M.KATAHIRA
REMARK 1 TITL STRUCTURE AND INTERACTIONS WITH RNA OF THE N-TERMINAL
REMARK 1 TITL 2 UUAG-SPECIFIC RNA-BINDING DOMAIN OF HNRNP D0
REMARK 1 REF J.MOL.BIOL. V. 287 221 1999
REMARK 1 REFN ISSN 0022-2836
REMARK 1 DOI 10.1006/JMBI.1999.2616
REMARK 1 REFERENCE 2
REMARK 1 AUTH F.ISHIKAWA,M.J.MATUNIS,G.DREYFUSS,T.R.CECH
REMARK 1 TITL NUCLEAR PROTEINS THAT BIND THE PRE-MRNA 3' SPLICE SITE
REMARK 1 TITL 2 SEQUENCE R(UUAG/G) AND THE HUMAN TELOMERIC DNA SEQUENCE
REMARK 1 TITL 3 D(TTAGGG)N
REMARK 1 REF MOL.CELL.BIOL. V. 13 4301 1993
REMARK 1 REFN ISSN 0270-7306
REMARK 2
REMARK 2 RESOLUTION. NOT APPLICABLE.
REMARK 3
REMARK 3 REFINEMENT.
REMARK 3 PROGRAM : X-PLOR 3.8, X-PLOR 3.8
REMARK 3 AUTHORS : BRUNGER (X-PLOR), BRUNGER (X-PLOR)
REMARK 3
REMARK 3 OTHER REFINEMENT REMARKS: NULL
REMARK 4
REMARK 4 1IQT COMPLIES WITH FORMAT V. 3.15, 01-DEC-08
REMARK 100
REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 02-AUG-01.
REMARK 100 THE DEPOSITION ID IS D_1000005193.
REMARK 210
REMARK 210 EXPERIMENTAL DETAILS
REMARK 210 EXPERIMENT TYPE : NMR
REMARK 210 TEMPERATURE (KELVIN) : 298
REMARK 210 PH : 6.0
REMARK 210 IONIC STRENGTH : 0MM
REMARK 210 PRESSURE : 1 ATM
REMARK 210 SAMPLE CONTENTS : 2MM 15N LABELED HNRNP D0 RBD2,
REMARK 210 20MM SODIUM PHOSPHATE, 1MM
REMARK 210 SODIUM AZIDE, 10MM DEUTERATED
REMARK 210 DTT, SMALL AMOUNTS OF DSS; 2MM
REMARK 210 HNRNP D0 RBD2, 20MM SODIUM
REMARK 210 PHOSPHATE, 1MM SODIUM AZIDE,
REMARK 210 10MM DEUTERATED DTT, SMALL
REMARK 210 AMOUNTS OF DSS; 2MM HNRNP D0
REMARK 210 RBD2, 20MM SODIUM PHOSPHATE, 1MM
REMARK 210 SODIUM AZIDE, 10MM DEUTERATED
REMARK 210 DTT, SMALL AMOUNTS OF DSS
REMARK 210
REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D_15N-SEPARATED_NOESY; HNHA; 2D
REMARK 210 NOESY; DQF-COSY
REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ
REMARK 210 SPECTROMETER MODEL : DRX
REMARK 210 SPECTROMETER MANUFACTURER : BRUKER
REMARK 210
REMARK 210 STRUCTURE DETERMINATION.
REMARK 210 SOFTWARE USED : CAPP/PIPP/STAPP 4.2.5, XWINNMR
REMARK 210 2.6
REMARK 210 METHOD USED : SIMULATED ANNEALING
REMARK 210
REMARK 210 CONFORMERS, NUMBER CALCULATED : 200
REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20
REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST
REMARK 210 ENERGY
REMARK 210
REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : NULL
REMARK 210
REMARK 210 REMARK: THE STRUCTURE WAS DETERMINED USING 2D HOMONUCLEAR AND 3D
REMARK 210 15N-EDITED HETERONUCLEAR TECHNIQUES.
REMARK 215
REMARK 215 NMR STUDY
REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION
REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT
REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON
REMARK 215 THESE RECORDS ARE MEANINGLESS.
REMARK 300
REMARK 300 BIOMOLECULE: 1
REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM
REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN
REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON
REMARK 300 BURIED SURFACE AREA.
REMARK 350
REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN
REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE
REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS
REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND
REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN.
REMARK 350
REMARK 350 BIOMOLECULE: 1
REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC
REMARK 350 APPLY THE FOLLOWING TO CHAINS: A
REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000
REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000
REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000
REMARK 500
REMARK 500 GEOMETRY AND STEREOCHEMISTRY
REMARK 500 SUBTOPIC: CLOSE CONTACTS
REMARK 500
REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT.
REMARK 500
REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE
REMARK 500 H VAL A 247 O SER A 250 1.47
REMARK 500 O LYS A 183 H ALA A 257 1.49
REMARK 500 O PRO A 194 H ILE A 198 1.52
REMARK 500 O ILE A 239 H LYS A 242 1.54
REMARK 500 O THR A 193 H GLU A 195 1.56
REMARK 500
REMARK 500 REMARK: NULL
REMARK 500
REMARK 500 GEOMETRY AND STEREOCHEMISTRY
REMARK 500 SUBTOPIC: TORSION ANGLES
REMARK 500
REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS:
REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER;
REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE).
REMARK 500
REMARK 500 STANDARD TABLE:
REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2)
REMARK 500
REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI-
REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400
REMARK 500
REMARK 500 M RES CSSEQI PSI PHI
REMARK 500 1 LEU A 189 40.09 26.74
REMARK 500 1 PRO A 194 58.22 -61.85
REMARK 500 1 TYR A 201 -71.33 -91.67
REMARK 500 1 ASP A 216 -155.18 -97.16
REMARK 500 1 ASN A 217 -80.25 58.23
REMARK 500 1 THR A 219 51.62 -146.81
REMARK 500 1 ASN A 220 -86.99 -146.20
REMARK 500 1 PHE A 230 -139.14 -111.36
REMARK 500 1 LYS A 231 -67.94 -125.25
REMARK 500 1 GLU A 232 -85.17 -70.48
REMARK 500 1 GLU A 233 -27.33 161.21
REMARK 500 1 LYS A 243 -31.86 -29.21
REMARK 500 1 HIS A 245 -151.82 -89.71
REMARK 500 1 LYS A 251 54.43 -119.53
REMARK 500 1 CYS A 252 167.90 -42.01
REMARK 500 1 VAL A 256 166.58 -38.74
REMARK 500 2 LEU A 189 54.39 16.45
REMARK 500 2 SER A 190 166.40 -41.34
REMARK 500 2 THR A 193 96.08 -39.28
REMARK 500 2 PRO A 194 49.06 -72.93
REMARK 500 2 TYR A 201 -71.46 -91.65
REMARK 500 2 MET A 215 98.24 52.66
REMARK 500 2 THR A 219 39.04 -150.60
REMARK 500 2 ASN A 220 -42.30 -150.92
REMARK 500 2 ARG A 223 -174.54 -51.65
REMARK 500 2 PHE A 230 -157.60 -104.17
REMARK 500 2 GLU A 232 -70.98 -91.61
REMARK 500 2 GLU A 233 -28.03 165.45
REMARK 500 2 LYS A 243 -40.68 -25.00
REMARK 500 2 HIS A 245 -159.60 -89.64
REMARK 500 2 LYS A 251 51.75 -149.86
REMARK 500 2 CYS A 252 156.01 -34.86
REMARK 500 2 VAL A 256 165.57 -36.65
REMARK 500 3 LEU A 189 68.52 0.02
REMARK 500 3 SER A 190 165.94 -41.00
REMARK 500 3 THR A 193 95.38 -38.88
REMARK 500 3 PRO A 194 46.87 -73.13
REMARK 500 3 TYR A 201 -72.03 -91.30
REMARK 500 3 PRO A 214 89.37 -69.11
REMARK 500 3 ASP A 216 -138.90 -79.51
REMARK 500 3 ASN A 217 94.22 60.46
REMARK 500 3 ASN A 220 -41.83 -150.78
REMARK 500 3 PHE A 230 -165.65 -101.36
REMARK 500 3 LYS A 231 -65.22 -92.21
REMARK 500 3 LYS A 243 -39.81 -25.42
REMARK 500 3 HIS A 245 -157.97 -91.19
REMARK 500 3 CYS A 252 161.19 -39.24
REMARK 500 3 VAL A 256 167.46 -38.38
REMARK 500 4 LEU A 189 56.61 12.89
REMARK 500 4 SER A 190 166.84 -42.12
REMARK 500
REMARK 500 THIS ENTRY HAS 362 RAMACHANDRAN OUTLIERS.
REMARK 500
REMARK 500 REMARK: NULL
REMARK 500
REMARK 500 GEOMETRY AND STEREOCHEMISTRY
REMARK 500 SUBTOPIC: PLANAR GROUPS
REMARK 500
REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL
REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE
REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN
REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS
REMARK 500 AN RMSD GREATER THAN THIS VALUE
REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER;
REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE).
REMARK 500
REMARK 500 M RES CSSEQI RMS TYPE
REMARK 500 1 ARG A 199 0.31 SIDE CHAIN
REMARK 500 1 ARG A 222 0.27 SIDE CHAIN
REMARK 500 1 ARG A 223 0.21 SIDE CHAIN
REMARK 500 2 ARG A 199 0.23 SIDE CHAIN
REMARK 500 2 ARG A 222 0.31 SIDE CHAIN
REMARK 500 2 ARG A 223 0.31 SIDE CHAIN
REMARK 500 3 ARG A 199 0.32 SIDE CHAIN
REMARK 500 3 ARG A 222 0.30 SIDE CHAIN
REMARK 500 4 ARG A 199 0.29 SIDE CHAIN
REMARK 500 4 ARG A 222 0.28 SIDE CHAIN
REMARK 500 4 ARG A 223 0.31 SIDE CHAIN
REMARK 500 5 ARG A 199 0.32 SIDE CHAIN
REMARK 500 5 ARG A 222 0.27 SIDE CHAIN
REMARK 500 5 ARG A 223 0.27 SIDE CHAIN
REMARK 500 6 ARG A 199 0.31 SIDE CHAIN
REMARK 500 6 ARG A 222 0.19 SIDE CHAIN
REMARK 500 6 ARG A 223 0.28 SIDE CHAIN
REMARK 500 7 ARG A 199 0.13 SIDE CHAIN
REMARK 500 7 ARG A 222 0.11 SIDE CHAIN
REMARK 500 7 ARG A 223 0.30 SIDE CHAIN
REMARK 500 8 ARG A 199 0.27 SIDE CHAIN
REMARK 500 8 ARG A 222 0.30 SIDE CHAIN
REMARK 500 8 ARG A 223 0.31 SIDE CHAIN
REMARK 500 9 ARG A 199 0.17 SIDE CHAIN
REMARK 500 9 ARG A 222 0.31 SIDE CHAIN
REMARK 500 9 ARG A 223 0.30 SIDE CHAIN
REMARK 500 10 ARG A 199 0.32 SIDE CHAIN
REMARK 500 10 ARG A 222 0.19 SIDE CHAIN
REMARK 500 10 ARG A 223 0.25 SIDE CHAIN
REMARK 500 11 ARG A 199 0.28 SIDE CHAIN
REMARK 500 11 ARG A 222 0.29 SIDE CHAIN
REMARK 500 11 ARG A 223 0.25 SIDE CHAIN
REMARK 500 12 ARG A 199 0.30 SIDE CHAIN
REMARK 500 12 ARG A 222 0.27 SIDE CHAIN
REMARK 500 12 ARG A 223 0.32 SIDE CHAIN
REMARK 500 13 ARG A 199 0.31 SIDE CHAIN
REMARK 500 13 ARG A 222 0.31 SIDE CHAIN
REMARK 500 13 ARG A 223 0.21 SIDE CHAIN
REMARK 500 14 ARG A 199 0.31 SIDE CHAIN
REMARK 500 14 ARG A 222 0.09 SIDE CHAIN
REMARK 500 14 ARG A 223 0.30 SIDE CHAIN
REMARK 500 15 ARG A 199 0.30 SIDE CHAIN
REMARK 500 15 ARG A 223 0.09 SIDE CHAIN
REMARK 500 16 ARG A 222 0.27 SIDE CHAIN
REMARK 500 17 ARG A 199 0.32 SIDE CHAIN
REMARK 500 17 ARG A 222 0.13 SIDE CHAIN
REMARK 500 18 ARG A 199 0.31 SIDE CHAIN
REMARK 500 18 ARG A 222 0.19 SIDE CHAIN
REMARK 500 18 ARG A 223 0.16 SIDE CHAIN
REMARK 500 19 ARG A 223 0.23 SIDE CHAIN
REMARK 500
REMARK 500 THIS ENTRY HAS 53 PLANE DEVIATIONS.
REMARK 500
REMARK 500 REMARK: NULL
REMARK 900
REMARK 900 RELATED ENTRIES
REMARK 900 RELATED ID: 1HD0 RELATED DB: PDB
REMARK 900 1HD0 CONTAINS THE MINIMIZED AVERAGE STRUCTURE OF THE N-TERMINAL
REMARK 900 DOMAIN OF HNRNP D0
REMARK 900 RELATED ID: 1HD1 RELATED DB: PDB
REMARK 900 1HD1 CONTAINS THE 20 STRUCTURES OF THE N-TERMINAL DOMAIN OF HNRNP D0
DBREF 1IQT A 183 257 UNP Q14103 HNRPD_HUMAN 85 159
SEQRES 1 A 75 LYS ILE PHE VAL GLY GLY LEU SER PRO ASP THR PRO GLU
SEQRES 2 A 75 GLU LYS ILE ARG GLU TYR PHE GLY GLY PHE GLY GLU VAL
SEQRES 3 A 75 GLU SER ILE GLU LEU PRO MET ASP ASN LYS THR ASN LYS
SEQRES 4 A 75 ARG ARG GLY PHE CYS PHE ILE THR PHE LYS GLU GLU GLU
SEQRES 5 A 75 PRO VAL LYS LYS ILE MET GLU LYS LYS TYR HIS ASN VAL
SEQRES 6 A 75 GLY LEU SER LYS CYS GLU ILE LYS VAL ALA
HELIX 1 1 PRO A 194 GLY A 206 1 13
HELIX 2 2 GLU A 233 GLU A 241 1 9
SHEET 1 A 4 SER A 210 ILE A 211 0
SHEET 2 A 4 CYS A 226 THR A 229 -1 N THR A 229 O SER A 210
SHEET 3 A 4 ILE A 184 VAL A 186 -1 N ILE A 184 O ILE A 228
SHEET 4 A 4 ILE A 254 VAL A 256 -1 N LYS A 255 O PHE A 185
CRYST1 1
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 1.000000 0.000000 0.000000 0.00000
SCALE2 0.000000 1.000000 0.000000 0.00000
SCALE3 0.000000 0.000000 1.000000 0.00000
MODEL 1
Complete list - n 27 2 Bytes