Header list of 1iou.pdb file
Complete list - b 23 2 Bytes
HEADER MEMBRANE PROTEIN 09-APR-01 1IOU
TITLE SOLUTION STRUCTURE OF YKT6P (1-140)
COMPND MOL_ID: 1;
COMPND 2 MOLECULE: YKT6P;
COMPND 3 CHAIN: A;
COMPND 4 FRAGMENT: RESIDUES 1-140;
COMPND 5 SYNONYM: SYNAPTOBREVIN HOMOLOG 1;
COMPND 6 ENGINEERED: YES
SOURCE MOL_ID: 1;
SOURCE 2 ORGANISM_SCIENTIFIC: SACCHAROMYCES CEREVISIAE;
SOURCE 3 ORGANISM_COMMON: BAKER'S YEAST;
SOURCE 4 ORGANISM_TAXID: 4932;
SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI;
SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562
KEYWDS SNARE, MEMBRANE PROTEIN
EXPDTA SOLUTION NMR
NUMMDL 20
AUTHOR H.TOCHIO,M.M.K.TSUI,D.K.BANFIELD,M.ZHANG
REVDAT 3 23-FEB-22 1IOU 1 REMARK SEQADV
REVDAT 2 24-FEB-09 1IOU 1 VERSN
REVDAT 1 06-MAY-03 1IOU 0
JRNL AUTH H.TOCHIO,M.M.K.TSUI,D.K.BANFIELD,M.ZHANG
JRNL TITL AN AUTOINHIBITORY MECHANISM FOR NONSYNTAXIN SNARE PROTEINS
JRNL TITL 2 REVEALED BY THE STRUCTURE OF YKT6P
JRNL REF SCIENCE V. 293 698 2001
JRNL REFN ISSN 0036-8075
JRNL PMID 11474112
JRNL DOI 10.1126/SCIENCE.1062950
REMARK 2
REMARK 2 RESOLUTION. NOT APPLICABLE.
REMARK 3
REMARK 3 REFINEMENT.
REMARK 3 PROGRAM : CNS 1.0, CNS 1.0
REMARK 3 AUTHORS : BRUNGER (CNS), BRUNGER (CNS)
REMARK 3
REMARK 3 OTHER REFINEMENT REMARKS: NULL
REMARK 4
REMARK 4 1IOU COMPLIES WITH FORMAT V. 3.15, 01-DEC-08
REMARK 100
REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 11-APR-01.
REMARK 100 THE DEPOSITION ID IS D_1000005130.
REMARK 210
REMARK 210 EXPERIMENTAL DETAILS
REMARK 210 EXPERIMENT TYPE : NMR
REMARK 210 TEMPERATURE (KELVIN) : 303
REMARK 210 PH : 7.0
REMARK 210 IONIC STRENGTH : 50MM
REMARK 210 PRESSURE : 1 ATM
REMARK 210 SAMPLE CONTENTS : 1.5MM YKT6(1-140) U-15N,13C;50MM
REMARK 210 PHOSPHATE BUFFER;20MM DTT;2MM
REMARK 210 EDTA;D2O; 1.5MM YKT6(1-140) U-
REMARK 210 15N;50MM PHOSPHATE BUFFER;20MM
REMARK 210 DTT;2MM EDTA;10% D2O; 1.5MM
REMARK 210 YKT6(1-140),13C;50MM PHOSPHATE
REMARK 210 BUFFER;20MM DTT;2MM EDTA;D2O
REMARK 210
REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D NOESY; 3D_13C
REMARK 210 -SEPARATED_NOESY; 3D_15N-
REMARK 210 SEPARATED_NOESY; HNHA
REMARK 210 SPECTROMETER FIELD STRENGTH : 750 MHZ; 500 MHZ
REMARK 210 SPECTROMETER MODEL : UNITYPLUS
REMARK 210 SPECTROMETER MANUFACTURER : VARIAN
REMARK 210
REMARK 210 STRUCTURE DETERMINATION.
REMARK 210 SOFTWARE USED : NULL
REMARK 210 METHOD USED : SIMULATED ANNEALING WITH TORSION
REMARK 210 ANGLE DYNAMICS
REMARK 210
REMARK 210 CONFORMERS, NUMBER CALCULATED : 200
REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20
REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LEAST
REMARK 210 RESTRAINT VIOLATIONS,STRUCTURES
REMARK 210 WITH THE LOWEST ENERGY
REMARK 210
REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : NULL
REMARK 210
REMARK 210 REMARK: NA
REMARK 215
REMARK 215 NMR STUDY
REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION
REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT
REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON
REMARK 215 THESE RECORDS ARE MEANINGLESS.
REMARK 300
REMARK 300 BIOMOLECULE: 1
REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM
REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN
REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON
REMARK 300 BURIED SURFACE AREA.
REMARK 350
REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN
REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE
REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS
REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND
REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN.
REMARK 350
REMARK 350 BIOMOLECULE: 1
REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC
REMARK 350 APPLY THE FOLLOWING TO CHAINS: A
REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000
REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000
REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000
REMARK 500
REMARK 500 GEOMETRY AND STEREOCHEMISTRY
REMARK 500 SUBTOPIC: CLOSE CONTACTS
REMARK 500
REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT.
REMARK 500
REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE
REMARK 500 O TRP A 110 H ASP A 112 1.55
REMARK 500 O TRP A 110 N ASP A 112 2.14
REMARK 500
REMARK 500 REMARK: NULL
REMARK 500
REMARK 500 GEOMETRY AND STEREOCHEMISTRY
REMARK 500 SUBTOPIC: TORSION ANGLES
REMARK 500
REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS:
REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER;
REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE).
REMARK 500
REMARK 500 STANDARD TABLE:
REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2)
REMARK 500
REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI-
REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400
REMARK 500
REMARK 500 M RES CSSEQI PSI PHI
REMARK 500 1 SER A 11 96.30 -47.56
REMARK 500 1 LEU A 19 -73.35 -46.01
REMARK 500 1 PHE A 30 36.89 -81.77
REMARK 500 1 PHE A 31 -40.63 -140.35
REMARK 500 1 ALA A 53 153.29 59.66
REMARK 500 1 ASN A 63 40.00 -163.74
REMARK 500 1 GLN A 84 45.17 -90.83
REMARK 500 1 PRO A 86 144.82 -34.71
REMARK 500 1 PRO A 106 149.98 -27.62
REMARK 500 1 ALA A 111 -68.87 46.67
REMARK 500 1 VAL A 113 -62.63 70.94
REMARK 500 1 THR A 114 -1.59 66.68
REMARK 500 1 GLU A 115 109.40 -164.60
REMARK 500 1 ASN A 117 72.48 -115.29
REMARK 500 1 LEU A 120 27.31 -155.04
REMARK 500 1 MET A 122 60.78 67.21
REMARK 500 1 GLN A 133 -32.80 -33.27
REMARK 500 1 SER A 136 -55.68 -150.55
REMARK 500 1 GLN A 137 -17.03 82.67
REMARK 500 2 SER A 11 86.10 -62.94
REMARK 500 2 GLU A 18 -171.46 159.42
REMARK 500 2 LEU A 19 -123.47 36.44
REMARK 500 2 PHE A 30 30.68 -94.71
REMARK 500 2 PHE A 31 -47.37 -139.22
REMARK 500 2 ALA A 53 157.05 56.98
REMARK 500 2 ASN A 63 -45.21 -173.07
REMARK 500 2 ARG A 71 -178.54 -67.10
REMARK 500 2 GLU A 73 109.84 179.02
REMARK 500 2 GLN A 84 39.31 -89.41
REMARK 500 2 PRO A 86 150.69 -31.91
REMARK 500 2 ALA A 104 -19.96 -45.00
REMARK 500 2 HIS A 105 136.16 -175.24
REMARK 500 2 PRO A 106 169.50 -39.22
REMARK 500 2 ALA A 111 -66.72 46.77
REMARK 500 2 ASP A 112 63.42 -153.29
REMARK 500 2 VAL A 113 -32.81 -35.70
REMARK 500 2 THR A 114 27.18 40.74
REMARK 500 2 GLU A 115 41.80 -172.02
REMARK 500 2 ASN A 117 -156.03 -173.33
REMARK 500 2 LYS A 121 168.57 66.82
REMARK 500 2 MET A 122 72.58 -177.32
REMARK 500 2 LYS A 123 -28.78 -39.47
REMARK 500 2 GLN A 124 -75.63 -65.16
REMARK 500 2 GLN A 133 -22.32 -39.31
REMARK 500 2 SER A 136 77.09 -176.63
REMARK 500 2 ALA A 138 78.59 86.48
REMARK 500 3 ARG A 2 102.47 -165.95
REMARK 500 3 SER A 11 98.35 -58.63
REMARK 500 3 LEU A 19 -84.74 -75.05
REMARK 500 3 LEU A 25 74.77 -115.50
REMARK 500
REMARK 500 THIS ENTRY HAS 414 RAMACHANDRAN OUTLIERS.
REMARK 500
REMARK 500 REMARK: NULL
REMARK 900
REMARK 900 RELATED ENTRIES
REMARK 900 RELATED ID: 1H8M RELATED DB: PDB
REMARK 900 1H8M IS THE MINIMIZED AVERAGE STRUCTURE
DBREF 1IOU A 1 140 UNP P36015 YKT6_YEAST 1 140
SEQADV 1IOU GLU A 55 UNP P36015 GLN 55 CONFLICT
SEQADV 1IOU GLN A 84 UNP P36015 GLU 84 CONFLICT
SEQRES 1 A 140 MET ARG ILE TYR TYR ILE GLY VAL PHE ARG SER GLY GLY
SEQRES 2 A 140 GLU LYS ALA LEU GLU LEU SER GLU VAL LYS ASP LEU SER
SEQRES 3 A 140 GLN PHE GLY PHE PHE GLU ARG SER SER VAL GLY GLN PHE
SEQRES 4 A 140 MET THR PHE PHE ALA GLU THR VAL ALA SER ARG THR GLY
SEQRES 5 A 140 ALA GLY GLU ARG GLN SER ILE GLU GLU GLY ASN TYR ILE
SEQRES 6 A 140 GLY HIS VAL TYR ALA ARG SER GLU GLY ILE CYS GLY VAL
SEQRES 7 A 140 LEU ILE THR ASP LYS GLN TYR PRO VAL ARG PRO ALA TYR
SEQRES 8 A 140 THR LEU LEU ASN LYS ILE LEU ASP GLU TYR LEU VAL ALA
SEQRES 9 A 140 HIS PRO LYS GLU GLU TRP ALA ASP VAL THR GLU THR ASN
SEQRES 10 A 140 ASP ALA LEU LYS MET LYS GLN LEU ASP THR TYR ILE SER
SEQRES 11 A 140 LYS TYR GLN ASP PRO SER GLN ALA ASP ALA
HELIX 1 1 PHE A 31 THR A 51 1 21
HELIX 2 2 PRO A 86 ALA A 104 1 19
HELIX 3 3 PRO A 106 ALA A 111 1 6
HELIX 4 4 MET A 122 TYR A 132 1 11
HELIX 5 5 SER A 136 ALA A 140 5 5
SHEET 1 A 5 LYS A 15 LYS A 23 0
SHEET 2 A 5 TYR A 5 GLY A 12 -1 O ILE A 6 N VAL A 22
SHEET 3 A 5 CYS A 76 ILE A 80 -1 O CYS A 76 N PHE A 9
SHEET 4 A 5 TYR A 64 TYR A 69 -1 O HIS A 67 N LEU A 79
SHEET 5 A 5 ARG A 56 GLU A 61 -1 N GLN A 57 O VAL A 68
CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 1.000000 0.000000 0.000000 0.00000
SCALE2 0.000000 1.000000 0.000000 0.00000
SCALE3 0.000000 0.000000 1.000000 0.00000
MODEL 1
Complete list - b 23 2 Bytes