Header list of 1imt.pdb file
Complete list - b 23 2 Bytes
HEADER TOXIN 14-APR-98 1IMT
TITLE MAMBA INTESTINAL TOXIN 1, NMR, 39 STRUCTURES
COMPND MOL_ID: 1;
COMPND 2 MOLECULE: INTESTINAL TOXIN 1;
COMPND 3 CHAIN: A;
COMPND 4 SYNONYM: MIT1
SOURCE MOL_ID: 1;
SOURCE 2 ORGANISM_SCIENTIFIC: DENDROASPIS POLYLEPIS POLYLEPIS;
SOURCE 3 ORGANISM_COMMON: BLACK MAMBA;
SOURCE 4 ORGANISM_TAXID: 8620;
SOURCE 5 STRAIN: POLYLEPIS;
SOURCE 6 SECRETION: VENOM
KEYWDS VENOM, STRUCTURAL HOMOLOGUE OF COLIPASE, RESISTANCE TO ENDOPROTEASES,
KEYWDS 2 CONTRACT GUINEA PIG ILEUM, TOXIN
EXPDTA SOLUTION NMR
NUMMDL 39
AUTHOR J.BOISBOUVIER,J.-P.ALBRAND,M.BLACKLEDGE,M.JAQUINOD,H.SCHWEITZ,
AUTHOR 2 M.LAZDUNSKI,D.MARION
REVDAT 3 23-FEB-22 1IMT 1 REMARK SEQADV
REVDAT 2 24-FEB-09 1IMT 1 VERSN
REVDAT 1 20-APR-99 1IMT 0
JRNL AUTH J.BOISBOUVIER,J.P.ALBRAND,M.BLACKLEDGE,M.JAQUINOD,
JRNL AUTH 2 H.SCHWEITZ,M.LAZDUNSKI,D.MARION
JRNL TITL A STRUCTURAL HOMOLOGUE OF COLIPASE IN BLACK MAMBA VENOM
JRNL TITL 2 REVEALED BY NMR FLOATING DISULPHIDE BRIDGE ANALYSIS.
JRNL REF J.MOL.BIOL. V. 283 205 1998
JRNL REFN ISSN 0022-2836
JRNL PMID 9761684
JRNL DOI 10.1006/JMBI.1998.2057
REMARK 2
REMARK 2 RESOLUTION. NOT APPLICABLE.
REMARK 3
REMARK 3 REFINEMENT.
REMARK 3 PROGRAM : DISCOVER
REMARK 3 AUTHORS : BIOSYM/MSI
REMARK 3
REMARK 3 OTHER REFINEMENT REMARKS: REFINEMENT DETAILS CAN BE FOUND IN THE
REMARK 3 JRNL CITATION: BLACKLEDGE, M. ET AL. (1995). J. MOL. BIOL. 245,
REMARK 3 PP661-681
REMARK 4
REMARK 4 1IMT COMPLIES WITH FORMAT V. 3.15, 01-DEC-08
REMARK 100
REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY BNL.
REMARK 100 THE DEPOSITION ID IS D_1000174202.
REMARK 210
REMARK 210 EXPERIMENTAL DETAILS
REMARK 210 EXPERIMENT TYPE : NMR
REMARK 210 TEMPERATURE (KELVIN) : 305
REMARK 210 PH : 4.5
REMARK 210 IONIC STRENGTH : NULL
REMARK 210 PRESSURE : NULL
REMARK 210 SAMPLE CONTENTS : H2O OR D2O
REMARK 210
REMARK 210 NMR EXPERIMENTS CONDUCTED : NOESY; TOCSY; COSY; HSQC; HSQC
REMARK 210 -TOCSY
REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ
REMARK 210 SPECTROMETER MODEL : AMX600
REMARK 210 SPECTROMETER MANUFACTURER : BRUKER
REMARK 210
REMARK 210 STRUCTURE DETERMINATION.
REMARK 210 SOFTWARE USED : DISCOVER
REMARK 210 METHOD USED : RESTRAINED SIMULATED ANNEALING
REMARK 210 AND RESTRAINED MOLECULAR
REMARK 210 DYNAMICS ENERGY REFINEMENT
REMARK 210
REMARK 210 CONFORMERS, NUMBER CALCULATED : 110
REMARK 210 CONFORMERS, NUMBER SUBMITTED : 39
REMARK 210 CONFORMERS, SELECTION CRITERIA : LEAST RESTRAINT VIOLATION AND
REMARK 210 BEST PHYSICAL ENERGY
REMARK 210
REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 2
REMARK 210
REMARK 210 REMARK: MODEL NUMBER 2 WAS DETERMINED USING 2D NMR SPECTROSCOPY ON
REMARK 210 PURIFIED TOXIN.
REMARK 215
REMARK 215 NMR STUDY
REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION
REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT
REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON
REMARK 215 THESE RECORDS ARE MEANINGLESS.
REMARK 300
REMARK 300 BIOMOLECULE: 1
REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM
REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN
REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON
REMARK 300 BURIED SURFACE AREA.
REMARK 350
REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN
REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE
REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS
REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND
REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN.
REMARK 350
REMARK 350 BIOMOLECULE: 1
REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC
REMARK 350 APPLY THE FOLLOWING TO CHAINS: A
REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000
REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000
REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000
REMARK 500
REMARK 500 GEOMETRY AND STEREOCHEMISTRY
REMARK 500 SUBTOPIC: TORSION ANGLES
REMARK 500
REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS:
REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER;
REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE).
REMARK 500
REMARK 500 STANDARD TABLE:
REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2)
REMARK 500
REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI-
REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400
REMARK 500
REMARK 500 M RES CSSEQI PSI PHI
REMARK 500 1 GLU A 8 -32.29 -136.13
REMARK 500 1 CYS A 13 -52.22 -138.91
REMARK 500 1 SER A 37 108.52 -38.86
REMARK 500 1 LYS A 47 161.36 -48.08
REMARK 500 1 MET A 55 -40.54 74.10
REMARK 500 1 ASN A 64 35.79 -87.40
REMARK 500 2 THR A 4 33.10 -74.85
REMARK 500 2 CYS A 13 -60.67 -99.28
REMARK 500 2 CYS A 31 99.55 -69.48
REMARK 500 2 SER A 37 111.83 -36.31
REMARK 500 2 LYS A 73 -39.81 71.48
REMARK 500 2 LYS A 74 81.73 -66.20
REMARK 500 2 SER A 79 37.79 -79.28
REMARK 500 3 ILE A 3 67.54 -118.91
REMARK 500 3 LYS A 15 -35.24 -39.17
REMARK 500 3 LYS A 26 -0.08 -57.99
REMARK 500 3 SER A 37 107.53 -41.05
REMARK 500 3 LYS A 47 156.48 -48.88
REMARK 500 3 PRO A 63 -43.49 -24.64
REMARK 500 3 LYS A 73 -44.36 71.64
REMARK 500 4 GLU A 8 -36.17 -131.12
REMARK 500 4 CYS A 13 -119.55 -104.04
REMARK 500 4 LYS A 15 83.67 -53.89
REMARK 500 4 LYS A 26 -1.38 -58.76
REMARK 500 4 CYS A 31 99.91 -65.55
REMARK 500 4 SER A 45 91.12 -67.34
REMARK 500 4 HIS A 46 134.06 -23.99
REMARK 500 4 PRO A 63 78.89 -37.27
REMARK 500 4 ASN A 64 -52.88 160.63
REMARK 500 4 THR A 70 -32.38 -131.48
REMARK 500 4 LYS A 73 -15.37 72.98
REMARK 500 5 VAL A 2 36.90 -83.68
REMARK 500 5 ILE A 3 -88.18 -0.72
REMARK 500 5 ALA A 6 145.42 133.24
REMARK 500 5 LEU A 11 -38.47 -39.70
REMARK 500 5 TRP A 24 -66.79 -99.83
REMARK 500 5 LYS A 26 -6.75 -56.04
REMARK 500 5 CYS A 31 95.38 -65.17
REMARK 500 5 SER A 37 108.53 -41.40
REMARK 500 5 SER A 45 106.89 -59.12
REMARK 500 5 LYS A 47 179.30 -59.31
REMARK 500 5 MET A 55 33.94 -78.64
REMARK 500 5 HIS A 57 37.50 -79.33
REMARK 500 5 PRO A 63 79.41 -46.64
REMARK 500 5 ASN A 64 -48.50 166.46
REMARK 500 5 LYS A 73 -34.34 72.94
REMARK 500 5 LYS A 74 85.49 -69.95
REMARK 500 6 ILE A 3 -71.21 61.68
REMARK 500 6 LYS A 15 34.18 -74.76
REMARK 500 6 VAL A 21 143.78 -38.01
REMARK 500
REMARK 500 THIS ENTRY HAS 381 RAMACHANDRAN OUTLIERS.
REMARK 500
REMARK 500 REMARK: NULL
REMARK 500
REMARK 500 GEOMETRY AND STEREOCHEMISTRY
REMARK 500 SUBTOPIC: PLANAR GROUPS
REMARK 500
REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL
REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE
REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN
REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS
REMARK 500 AN RMSD GREATER THAN THIS VALUE
REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER;
REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE).
REMARK 500
REMARK 500 M RES CSSEQI RMS TYPE
REMARK 500 2 ARG A 29 0.15 SIDE CHAIN
REMARK 500 4 PHE A 50 0.14 SIDE CHAIN
REMARK 500 4 ARG A 54 0.08 SIDE CHAIN
REMARK 500 7 HIS A 46 0.09 SIDE CHAIN
REMARK 500 8 ARG A 54 0.13 SIDE CHAIN
REMARK 500 12 ARG A 29 0.10 SIDE CHAIN
REMARK 500 12 HIS A 57 0.10 SIDE CHAIN
REMARK 500 13 ARG A 54 0.10 SIDE CHAIN
REMARK 500 19 HIS A 57 0.08 SIDE CHAIN
REMARK 500 20 ARG A 29 0.12 SIDE CHAIN
REMARK 500 22 PHE A 75 0.10 SIDE CHAIN
REMARK 500 23 HIS A 57 0.10 SIDE CHAIN
REMARK 500 26 HIS A 57 0.13 SIDE CHAIN
REMARK 500 27 ARG A 29 0.11 SIDE CHAIN
REMARK 500 27 HIS A 46 0.09 SIDE CHAIN
REMARK 500 29 ARG A 29 0.11 SIDE CHAIN
REMARK 500 32 ARG A 9 0.09 SIDE CHAIN
REMARK 500 32 PHE A 75 0.10 SIDE CHAIN
REMARK 500 33 ARG A 9 0.11 SIDE CHAIN
REMARK 500 33 PHE A 75 0.13 SIDE CHAIN
REMARK 500 35 ARG A 29 0.11 SIDE CHAIN
REMARK 500 36 ARG A 54 0.12 SIDE CHAIN
REMARK 500 39 HIS A 57 0.10 SIDE CHAIN
REMARK 500
REMARK 500 REMARK: NULL
DBREF 1IMT A 1 80 UNP P25687 VPRA_DENPO 1 81
SEQADV 1IMT A UNP P25687 LYS 55 DELETION
SEQRES 1 A 80 ALA VAL ILE THR GLY ALA CYS GLU ARG ASP LEU GLN CYS
SEQRES 2 A 80 GLY LYS GLY THR CYS CYS ALA VAL SER LEU TRP ILE LYS
SEQRES 3 A 80 SER VAL ARG VAL CYS THR PRO VAL GLY THR SER GLY GLU
SEQRES 4 A 80 ASP CYS HIS PRO ALA SER HIS LYS ILE PRO PHE SER GLY
SEQRES 5 A 80 GLN ARG MET HIS HIS THR CYS PRO CYS ALA PRO ASN LEU
SEQRES 6 A 80 ALA CYS VAL GLN THR SER PRO LYS LYS PHE LYS CYS LEU
SEQRES 7 A 80 SER LYS
HELIX 1 1 ASP A 10 GLN A 12 5 3
SHEET 1 A 2 THR A 17 VAL A 21 0
SHEET 2 A 2 ARG A 29 PRO A 33 -1 N THR A 32 O CYS A 18
SHEET 1 B 2 ALA A 66 SER A 71 0
SHEET 2 B 2 LYS A 74 LEU A 78 -1 N LEU A 78 O ALA A 66
SSBOND 1 CYS A 7 CYS A 19 1555 1555 2.08
SSBOND 2 CYS A 13 CYS A 31 1555 1555 2.08
SSBOND 3 CYS A 18 CYS A 59 1555 1555 2.08
SSBOND 4 CYS A 41 CYS A 67 1555 1555 2.08
SSBOND 5 CYS A 61 CYS A 77 1555 1555 2.08
CISPEP 1 ILE A 48 PRO A 49 1 2.25
CISPEP 2 ILE A 48 PRO A 49 2 -4.26
CISPEP 3 ILE A 48 PRO A 49 3 1.10
CISPEP 4 ILE A 48 PRO A 49 4 -3.69
CISPEP 5 ILE A 48 PRO A 49 5 -5.36
CISPEP 6 ILE A 48 PRO A 49 6 -6.34
CISPEP 7 ILE A 48 PRO A 49 7 -1.35
CISPEP 8 ILE A 48 PRO A 49 8 10.46
CISPEP 9 ILE A 48 PRO A 49 9 0.30
CISPEP 10 ILE A 48 PRO A 49 10 -10.34
CISPEP 11 ILE A 48 PRO A 49 11 -9.70
CISPEP 12 ILE A 48 PRO A 49 12 -8.19
CISPEP 13 ILE A 48 PRO A 49 13 -5.28
CISPEP 14 ILE A 48 PRO A 49 14 -3.24
CISPEP 15 ILE A 48 PRO A 49 15 -6.36
CISPEP 16 ILE A 48 PRO A 49 16 -3.98
CISPEP 17 ILE A 48 PRO A 49 17 -4.85
CISPEP 18 ILE A 48 PRO A 49 18 -5.21
CISPEP 19 ILE A 48 PRO A 49 19 -10.11
CISPEP 20 ILE A 48 PRO A 49 20 -9.98
CISPEP 21 ILE A 48 PRO A 49 21 -3.12
CISPEP 22 ILE A 48 PRO A 49 22 -9.28
CISPEP 23 ILE A 48 PRO A 49 23 -7.70
CISPEP 24 ILE A 48 PRO A 49 24 -3.68
CISPEP 25 ILE A 48 PRO A 49 25 -5.20
CISPEP 26 ILE A 48 PRO A 49 26 -7.39
CISPEP 27 ILE A 48 PRO A 49 27 -10.40
CISPEP 28 ILE A 48 PRO A 49 28 -10.51
CISPEP 29 ILE A 48 PRO A 49 29 -9.99
CISPEP 30 ILE A 48 PRO A 49 30 -5.87
CISPEP 31 ILE A 48 PRO A 49 31 -7.56
CISPEP 32 ILE A 48 PRO A 49 32 -7.33
CISPEP 33 ILE A 48 PRO A 49 33 -6.54
CISPEP 34 ILE A 48 PRO A 49 34 -8.89
CISPEP 35 ILE A 48 PRO A 49 35 -1.24
CISPEP 36 ILE A 48 PRO A 49 36 -7.70
CISPEP 37 ILE A 48 PRO A 49 37 -6.39
CISPEP 38 ILE A 48 PRO A 49 38 -3.43
CISPEP 39 ILE A 48 PRO A 49 39 -10.41
CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 1.000000 0.000000 0.000000 0.00000
SCALE2 0.000000 1.000000 0.000000 0.00000
SCALE3 0.000000 0.000000 1.000000 0.00000
MODEL 1
Complete list - b 23 2 Bytes