Header list of 1ija.pdb file
Complete list - b 5 2 Bytes
HEADER PROTEIN BINDING 25-APR-01 1IJA
TITLE STRUCTURE OF SORTASE
COMPND MOL_ID: 1;
COMPND 2 MOLECULE: SORTASE;
COMPND 3 CHAIN: A;
COMPND 4 FRAGMENT: CATALYTIC DOMAIN (RESIDUES 60-206);
COMPND 5 ENGINEERED: YES
SOURCE MOL_ID: 1;
SOURCE 2 ORGANISM_SCIENTIFIC: STAPHYLOCOCCUS AUREUS;
SOURCE 3 ORGANISM_TAXID: 1280;
SOURCE 4 STRAIN: OS2;
SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3);
SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008;
SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3);
SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID;
SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET9A
KEYWDS EIGHT STRANDED BETA BARREL, TRANSPEPTIDASE, PROTEIN BINDING
EXPDTA SOLUTION NMR
NUMMDL 25
AUTHOR U.ILANGOVAN,H.TON-THAT,J.IWAHARA,O.SCHNEEWIND,R.T.CLUBB
REVDAT 4 05-FEB-20 1IJA 1 REMARK SEQADV
REVDAT 3 24-FEB-09 1IJA 1 VERSN
REVDAT 2 16-MAY-01 1IJA 1 JRNL
REVDAT 1 09-MAY-01 1IJA 0
JRNL AUTH U.ILANGOVAN,H.TON-THAT,J.IWAHARA,O.SCHNEEWIND,R.T.CLUBB
JRNL TITL STRUCTURE OF SORTASE, THE TRANSPEPTIDASE THAT ANCHORS
JRNL TITL 2 PROTEINS TO THE CELL WALL OF STAPHYLOCOCCUS AUREUS.
JRNL REF PROC.NATL.ACAD.SCI.USA V. 98 6056 2001
JRNL REFN ISSN 0027-8424
JRNL PMID 11371637
JRNL DOI 10.1073/PNAS.101064198
REMARK 2
REMARK 2 RESOLUTION. NOT APPLICABLE.
REMARK 3
REMARK 3 REFINEMENT.
REMARK 3 PROGRAM : XWINNMR 2.6, X-PLOR 3.843
REMARK 3 AUTHORS : BRUKER (XWINNMR), BRUNGER, T.A. (X-PLOR)
REMARK 3
REMARK 3 OTHER REFINEMENT REMARKS: THE STRUCTURES ARE BASED ON A TOTAL OF
REMARK 3 2105 EXPERIMENTAL RESTRAINTS, 1852 NOE-DERIVED DISTANCE
REMARK 3 RESTRAINTS, 195 DIHEDRAL ANGLE RESTRAINTS, 58 COUPLING CONSTANT
REMARK 3 RESTAINTS
REMARK 4
REMARK 4 1IJA COMPLIES WITH FORMAT V. 3.15, 01-DEC-08
REMARK 100
REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 26-APR-01.
REMARK 100 THE DEPOSITION ID IS D_1000013326.
REMARK 210
REMARK 210 EXPERIMENTAL DETAILS
REMARK 210 EXPERIMENT TYPE : NMR
REMARK 210 TEMPERATURE (KELVIN) : 308
REMARK 210 PH : 6.2
REMARK 210 IONIC STRENGTH : 100 MM NACL
REMARK 210 PRESSURE : AMBIENT
REMARK 210 SAMPLE CONTENTS : 2.5 MM SORTASE 15N,13C; 50 MM
REMARK 210 TRIS (PH 6.2); 20 MM CACL2; 100
REMARK 210 MM NACL; 3 MM DTT; 93 % H2O; 7 %
REMARK 210 D2O
REMARK 210
REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D_15N_EDITED_NOESY;
REMARK 210 4D_15N/13C_EDITED_NOESY; 3D_13C_
REMARK 210 EDITED_NOESY; 4D_13C/13C_EDITED_
REMARK 210 NOESY
REMARK 210 SPECTROMETER FIELD STRENGTH : 500 MHZ; 600 MHZ
REMARK 210 SPECTROMETER MODEL : DRX
REMARK 210 SPECTROMETER MANUFACTURER : BRUKER
REMARK 210
REMARK 210 STRUCTURE DETERMINATION.
REMARK 210 SOFTWARE USED : NMRPIPE 1.7, NMRVIEW 4.1.3, X
REMARK 210 -PLOR 3.843
REMARK 210 METHOD USED : DISTANCE GEOMETRY AND SIMULATED
REMARK 210 ANNEALING
REMARK 210
REMARK 210 CONFORMERS, NUMBER CALCULATED : 150
REMARK 210 CONFORMERS, NUMBER SUBMITTED : 25
REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH ACCEPTABLE
REMARK 210 COVALENT GEOMETRY,STRUCTURES
REMARK 210 WITH FAVORABLE NON-BOND ENERGY,
REMARK 210 STRUCTURES WITH THE LEAST
REMARK 210 RESTRAINT VIOLATIONS
REMARK 210
REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1
REMARK 210
REMARK 210 REMARK: THIS STRUCTURE WAS DETERMINED USING TRIPLE RESONANCE NMR
REMARK 210 SPECTROSCOPY.
REMARK 215
REMARK 215 NMR STUDY
REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION
REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT
REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON
REMARK 215 THESE RECORDS ARE MEANINGLESS.
REMARK 300
REMARK 300 BIOMOLECULE: 1
REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM
REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN
REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON
REMARK 300 BURIED SURFACE AREA.
REMARK 350
REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN
REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE
REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS
REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND
REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN.
REMARK 350
REMARK 350 BIOMOLECULE: 1
REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC
REMARK 350 APPLY THE FOLLOWING TO CHAINS: A
REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000
REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000
REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000
REMARK 500
REMARK 500 GEOMETRY AND STEREOCHEMISTRY
REMARK 500 SUBTOPIC: CLOSE CONTACTS
REMARK 500
REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT.
REMARK 500
REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE
REMARK 500 HG1 THR A 63 HZ1 LYS A 76 1.34
REMARK 500 O THR A 73 HZ3 LYS A 76 1.41
REMARK 500 O GLN A 38 H ARG A 41 1.46
REMARK 500 O ASP A 107 H GLY A 109 1.53
REMARK 500 OG1 THR A 63 HZ1 LYS A 76 1.55
REMARK 500 O TYR A 30 HG SER A 44 1.58
REMARK 500 H ALA A 46 O SER A 58 1.58
REMARK 500
REMARK 500 REMARK: NULL
REMARK 500
REMARK 500 GEOMETRY AND STEREOCHEMISTRY
REMARK 500 SUBTOPIC: TORSION ANGLES
REMARK 500
REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS:
REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER;
REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE).
REMARK 500
REMARK 500 STANDARD TABLE:
REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2)
REMARK 500
REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI-
REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400
REMARK 500
REMARK 500 M RES CSSEQI PSI PHI
REMARK 500 1 LYS A 4 58.16 -152.14
REMARK 500 1 PRO A 5 -160.31 -69.44
REMARK 500 1 LYS A 9 -7.55 -59.48
REMARK 500 1 LYS A 11 -5.68 -57.21
REMARK 500 1 LYS A 26 80.58 -164.64
REMARK 500 1 ALA A 34 88.04 -43.22
REMARK 500 1 GLN A 38 -62.39 -93.34
REMARK 500 1 LEU A 39 -18.66 -46.26
REMARK 500 1 GLN A 55 -20.00 -42.31
REMARK 500 1 THR A 63 87.36 -153.06
REMARK 500 1 ARG A 67 70.01 -150.05
REMARK 500 1 PRO A 68 18.64 -54.38
REMARK 500 1 TYR A 70 -153.90 -130.07
REMARK 500 1 GLN A 71 -89.66 -62.46
REMARK 500 1 ALA A 78 170.22 -56.30
REMARK 500 1 ASN A 90 53.92 -116.16
REMARK 500 1 THR A 98 18.85 -153.11
REMARK 500 1 SER A 99 87.45 -170.14
REMARK 500 1 ASP A 102 -16.60 -43.64
REMARK 500 1 VAL A 103 -112.26 -59.50
REMARK 500 1 VAL A 108 46.61 -67.75
REMARK 500 1 LEU A 111 -33.39 -139.99
REMARK 500 1 LYS A 115 -155.68 -64.68
REMARK 500 1 LYS A 117 -121.61 -95.99
REMARK 500 1 LYS A 119 150.63 -38.52
REMARK 500 1 GLU A 137 -77.54 -40.28
REMARK 500 1 ARG A 139 79.48 -151.03
REMARK 500 1 VAL A 147 -153.19 -91.97
REMARK 500 2 PRO A 5 -125.80 -42.52
REMARK 500 2 PRO A 8 150.58 -42.33
REMARK 500 2 SER A 12 30.81 -98.48
REMARK 500 2 LYS A 26 81.35 -168.97
REMARK 500 2 ALA A 34 87.75 -40.85
REMARK 500 2 GLN A 38 -69.36 -96.98
REMARK 500 2 GLU A 50 95.77 -62.87
REMARK 500 2 GLN A 55 -14.74 -46.72
REMARK 500 2 HIS A 62 -169.29 -74.53
REMARK 500 2 THR A 63 99.99 -167.84
REMARK 500 2 ARG A 67 75.58 -151.04
REMARK 500 2 PRO A 68 24.12 -51.78
REMARK 500 2 ASN A 69 62.92 -151.70
REMARK 500 2 GLN A 71 -119.23 65.03
REMARK 500 2 PHE A 72 33.35 -87.44
REMARK 500 2 ASN A 90 29.80 -154.27
REMARK 500 2 THR A 98 20.07 -149.44
REMARK 500 2 SER A 99 123.69 -171.37
REMARK 500 2 ARG A 101 -70.80 -86.54
REMARK 500 2 ASP A 102 10.72 51.16
REMARK 500 2 VAL A 103 -93.64 -91.05
REMARK 500 2 PRO A 105 28.89 -73.06
REMARK 500
REMARK 500 THIS ENTRY HAS 753 RAMACHANDRAN OUTLIERS.
REMARK 500
REMARK 500 REMARK: NULL
REMARK 900
REMARK 900 RELATED ENTRIES
REMARK 900 RELATED ID: 4879 RELATED DB: BMRB
REMARK 900 4879 IS THE CHEMICAL SHIFT ASSIGNMENTS OF SORTASE
DBREF 1IJA A 2 148 UNP Q9S446 Q9S446_STAAU 60 206
SEQADV 1IJA MET A 1 UNP Q9S446 INITIATING METHIONINE
SEQRES 1 A 148 MET GLN ALA LYS PRO GLN ILE PRO LYS ASP LYS SER LYS
SEQRES 2 A 148 VAL ALA GLY TYR ILE GLU ILE PRO ASP ALA ASP ILE LYS
SEQRES 3 A 148 GLU PRO VAL TYR PRO GLY PRO ALA THR PRO GLU GLN LEU
SEQRES 4 A 148 ASN ARG GLY VAL SER PHE ALA GLU GLU ASN GLU SER LEU
SEQRES 5 A 148 ASP ASP GLN ASN ILE SER ILE ALA GLY HIS THR PHE ILE
SEQRES 6 A 148 ASP ARG PRO ASN TYR GLN PHE THR ASN LEU LYS ALA ALA
SEQRES 7 A 148 LYS LYS GLY SER MET VAL TYR PHE LYS VAL GLY ASN GLU
SEQRES 8 A 148 THR ARG LYS TYR LYS MET THR SER ILE ARG ASP VAL LYS
SEQRES 9 A 148 PRO THR ASP VAL GLY VAL LEU ASP GLU GLN LYS GLY LYS
SEQRES 10 A 148 ASP LYS GLN LEU THR LEU ILE THR CYS ASP ASP TYR ASN
SEQRES 11 A 148 GLU LYS THR GLY VAL TRP GLU LYS ARG LYS ILE PHE VAL
SEQRES 12 A 148 ALA THR GLU VAL LYS
HELIX 1 1 THR A 35 ASN A 40 1 6
HELIX 2 2 THR A 73 ALA A 78 5 6
SHEET 1 A 9 GLY A 16 ILE A 20 0
SHEET 2 A 9 ILE A 25 TYR A 30 -1 N ILE A 25 O ILE A 20
SHEET 3 A 9 VAL A 43 PHE A 45 1 O VAL A 43 N TYR A 30
SHEET 4 A 9 ASN A 56 HIS A 62 -1 N ALA A 60 O SER A 44
SHEET 5 A 9 GLN A 120 CYS A 126 1 O GLN A 120 N ILE A 57
SHEET 6 A 9 ILE A 141 THR A 145 -1 O PHE A 142 N LEU A 123
SHEET 7 A 9 GLU A 91 ILE A 100 -1 N LYS A 96 O THR A 145
SHEET 8 A 9 MET A 83 VAL A 88 -1 O VAL A 84 N TYR A 95
SHEET 9 A 9 GLY A 16 ILE A 20 -1 O TYR A 17 N LYS A 87
SHEET 1 B 2 TYR A 129 ASN A 130 0
SHEET 2 B 2 VAL A 135 TRP A 136 -1 O VAL A 135 N ASN A 130
CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 1.000000 0.000000 0.000000 0.00000
SCALE2 0.000000 1.000000 0.000000 0.00000
SCALE3 0.000000 0.000000 1.000000 0.00000
MODEL 1
Complete list - b 5 2 Bytes