Header list of 1iez.pdb file
Complete list - r 25 2 Bytes
HEADER ISOMERASE 11-APR-01 1IEZ
TITLE SOLUTION STRUCTURE OF 3,4-DIHYDROXY-2-BUTANONE 4-PHOSPHATE SYNTHASE OF
TITLE 2 RIBOFLAVIN BIOSYNTHESIS
COMPND MOL_ID: 1;
COMPND 2 MOLECULE: 3,4-DIHYDROXY-2-BUTANONE 4-PHOSPHATE SYNTHASE;
COMPND 3 CHAIN: A;
COMPND 4 SYNONYM: DHBP SYNTHASE, (DHBPS)S;
COMPND 5 EC: 5.4.99.-;
COMPND 6 ENGINEERED: YES
SOURCE MOL_ID: 1;
SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI;
SOURCE 3 ORGANISM_TAXID: 83333;
SOURCE 4 STRAIN: K12;
SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI;
SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562;
SOURCE 7 EXPRESSION_SYSTEM_STRAIN: M15;
SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PQE32
KEYWDS DIHYDROXYBUTANONE PHOSPHATE SYNTHASE, RIBOFLAVIN BIOSYNTHESIS,
KEYWDS 2 SKELETAL REARRANGEMENT, ANTIMICROBIAL TARGET, STRUCTURE BASED
KEYWDS 3 DESIGN, ISOMERASE
EXPDTA SOLUTION NMR
NUMMDL 10
AUTHOR M.J.S.KELLY,L.J.BALL,R.KUHNE,A.BACHER,H.OSCHKINAT
REVDAT 4 13-JUL-11 1IEZ 1 VERSN
REVDAT 3 24-FEB-09 1IEZ 1 VERSN
REVDAT 2 01-APR-03 1IEZ 1 JRNL
REVDAT 1 07-NOV-01 1IEZ 0
JRNL AUTH M.J.KELLY,L.J.BALL,C.KRIEGER,Y.YU,M.FISCHER,S.SCHIFFMANN,
JRNL AUTH 2 P.SCHMIEDER,R.KUHNE,W.BERMEL,A.BACHER,G.RICHTER,H.OSCHKINAT
JRNL TITL THE NMR STRUCTURE OF THE 47-KDA DIMERIC ENZYME
JRNL TITL 2 3,4-DIHYDROXY-2-BUTANONE-4-PHOSPHATE SYNTHASE AND LIGAND
JRNL TITL 3 BINDING STUDIES REVEAL THE LOCATION OF THE ACTIVE SITE.
JRNL REF PROC.NATL.ACAD.SCI.USA V. 98 13025 2001
JRNL REFN ISSN 0027-8424
JRNL PMID 11687623
JRNL DOI 10.1073/PNAS.231323598
REMARK 2
REMARK 2 RESOLUTION. NOT APPLICABLE.
REMARK 3
REMARK 3 REFINEMENT.
REMARK 3 PROGRAM : X-PLOR 3.1
REMARK 3 AUTHORS : BRUNGER
REMARK 3
REMARK 3 OTHER REFINEMENT REMARKS:
REMARK 3 730 NOE-DERIVED DISTANCE CONSTRAINTS,
REMARK 3 230 DIHEDRAL ANGLE RESTRAINTS,
REMARK 3 40 DISTANCE RESTRAINTS FROM HYDROGEN BONDS
REMARK 4
REMARK 4 1IEZ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11
REMARK 100
REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 12-APR-01.
REMARK 100 THE RCSB ID CODE IS RCSB013221.
REMARK 210
REMARK 210 EXPERIMENTAL DETAILS
REMARK 210 EXPERIMENT TYPE : NMR
REMARK 210 TEMPERATURE (KELVIN) : 313
REMARK 210 PH : 6.0
REMARK 210 IONIC STRENGTH : 50MM NAPO4
REMARK 210 PRESSURE : 1ATM
REMARK 210 SAMPLE CONTENTS : 2MM DHBPS U-15N,13C, 50MMOL
REMARK 210 NAPO4, PH 6,
REMARK 210
REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D NOESY; 3D_13C-SEPARATED_
REMARK 210 NOESY; 3D_15N-SEPARATED_NOESY;
REMARK 210 DQF-COSY
REMARK 210 SPECTROMETER FIELD STRENGTH : 750 MHZ
REMARK 210 SPECTROMETER MODEL : AVANCE
REMARK 210 SPECTROMETER MANUFACTURER : BRUKER
REMARK 210
REMARK 210 STRUCTURE DETERMINATION.
REMARK 210 SOFTWARE USED : ANSIG 3.0, AZARA 3.3, X-PLOR 3.1
REMARK 210 METHOD USED : SIMULATED ANNEALING
REMARK 210
REMARK 210 CONFORMERS, NUMBER CALCULATED : 200
REMARK 210 CONFORMERS, NUMBER SUBMITTED : 10
REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LEAST
REMARK 210 RESTRAINT VIOLATIONS,STRUCTURES
REMARK 210 WITH THE LOWEST ENERGY
REMARK 210
REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1
REMARK 210
REMARK 210 REMARK: NULL
REMARK 215
REMARK 215 NMR STUDY
REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION
REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT
REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON
REMARK 215 THESE RECORDS ARE MEANINGLESS.
REMARK 300
REMARK 300 BIOMOLECULE: 1
REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM
REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN
REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON
REMARK 300 BURIED SURFACE AREA.
REMARK 350
REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN
REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE
REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS
REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND
REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN.
REMARK 350
REMARK 350 BIOMOLECULE: 1
REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC
REMARK 350 APPLY THE FOLLOWING TO CHAINS: A
REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000
REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000
REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000
REMARK 500
REMARK 500 GEOMETRY AND STEREOCHEMISTRY
REMARK 500 SUBTOPIC: CLOSE CONTACTS
REMARK 500
REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT.
REMARK 500
REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE
REMARK 500 O PHE A 45 H VAL A 171 1.49
REMARK 500 O ASP A 159 H LEU A 163 1.49
REMARK 500 O SER A 110 H ARG A 114 1.57
REMARK 500 O ARG A 114 H VAL A 118 1.58
REMARK 500 O THR A 154 H THR A 157 1.58
REMARK 500
REMARK 500 REMARK: NULL
REMARK 500
REMARK 500 GEOMETRY AND STEREOCHEMISTRY
REMARK 500 SUBTOPIC: TORSION ANGLES
REMARK 500
REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS:
REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER;
REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE).
REMARK 500
REMARK 500 STANDARD TABLE:
REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2)
REMARK 500
REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI-
REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400
REMARK 500
REMARK 500 M RES CSSEQI PSI PHI
REMARK 500 1 ASN A 2 56.41 -93.70
REMARK 500 1 SER A 7 -64.68 -92.18
REMARK 500 1 GLU A 25 41.98 -98.40
REMARK 500 1 ASP A 34 78.25 -109.77
REMARK 500 1 ASP A 36 -62.92 -96.31
REMARK 500 1 ASN A 39 -70.55 -173.28
REMARK 500 1 MET A 43 47.07 -93.88
REMARK 500 1 ILE A 44 20.52 -68.49
REMARK 500 1 MET A 50 86.08 -62.67
REMARK 500 1 ARG A 60 -64.07 -95.53
REMARK 500 1 LEU A 78 43.65 -97.74
REMARK 500 1 ASP A 79 76.65 -28.97
REMARK 500 1 MET A 82 46.01 -103.12
REMARK 500 1 GLU A 85 44.16 -101.48
REMARK 500 1 ASN A 86 81.05 -61.59
REMARK 500 1 THR A 88 -55.38 74.90
REMARK 500 1 TYR A 91 67.67 -68.18
REMARK 500 1 PHE A 95 100.14 -58.60
REMARK 500 1 THR A 96 81.05 -59.66
REMARK 500 1 VAL A 97 151.42 -33.48
REMARK 500 1 THR A 98 -178.37 -69.67
REMARK 500 1 ALA A 101 95.29 -51.37
REMARK 500 1 THR A 106 59.06 -145.91
REMARK 500 1 THR A 107 -31.97 -138.91
REMARK 500 1 ALA A 111 -29.85 -34.81
REMARK 500 1 ALA A 112 -74.86 -82.41
REMARK 500 1 ALA A 123 72.49 -106.58
REMARK 500 1 HIS A 136 38.22 31.21
REMARK 500 1 PRO A 168 84.46 -64.81
REMARK 500 1 GLU A 174 -169.06 -114.27
REMARK 500 1 LEU A 175 90.88 -63.67
REMARK 500 1 MET A 182 80.81 -63.83
REMARK 500 1 ALA A 185 160.02 60.85
REMARK 500 2 ASN A 2 55.83 -110.96
REMARK 500 2 SER A 8 38.98 -87.97
REMARK 500 2 PHE A 9 44.25 -67.26
REMARK 500 2 GLU A 25 42.76 -91.73
REMARK 500 2 ASP A 33 -61.90 -154.06
REMARK 500 2 ASP A 36 74.62 -167.82
REMARK 500 2 ARG A 37 -85.56 57.70
REMARK 500 2 ASN A 39 54.46 -108.43
REMARK 500 2 GLU A 40 127.01 -176.35
REMARK 500 2 MET A 43 53.92 -95.34
REMARK 500 2 ILE A 44 19.98 -61.22
REMARK 500 2 MET A 50 88.64 -51.53
REMARK 500 2 LEU A 78 44.55 -96.69
REMARK 500 2 ASP A 79 78.74 -26.81
REMARK 500 2 MET A 82 44.45 -99.63
REMARK 500 2 ASN A 86 82.15 -68.52
REMARK 500 2 ASN A 87 104.76 -43.11
REMARK 500
REMARK 500 THIS ENTRY HAS 349 RAMACHANDRAN OUTLIERS.
REMARK 500
REMARK 500 REMARK: NULL
REMARK 900
REMARK 900 RELATED ENTRIES
REMARK 900 RELATED ID: 1G57 RELATED DB: PDB
REMARK 900 RELATED ID: 1G58 RELATED DB: PDB
DBREF 1IEZ A 1 217 UNP P0A7J0 RIBB_ECOLI 1 217
SEQRES 1 A 217 MET ASN GLN THR LEU LEU SER SER PHE GLY THR PRO PHE
SEQRES 2 A 217 GLU ARG VAL GLU ASN ALA LEU ALA ALA LEU ARG GLU GLY
SEQRES 3 A 217 ARG GLY VAL MET VAL LEU ASP ASP GLU ASP ARG GLU ASN
SEQRES 4 A 217 GLU GLY ASP MET ILE PHE PRO ALA GLU THR MET THR VAL
SEQRES 5 A 217 GLU GLN MET ALA LEU THR ILE ARG HIS GLY SER GLY ILE
SEQRES 6 A 217 VAL CYS LEU CYS ILE THR GLU ASP ARG ARG LYS GLN LEU
SEQRES 7 A 217 ASP LEU PRO MET MET VAL GLU ASN ASN THR SER ALA TYR
SEQRES 8 A 217 GLY THR GLY PHE THR VAL THR ILE GLU ALA ALA GLU GLY
SEQRES 9 A 217 VAL THR THR GLY VAL SER ALA ALA ASP ARG ILE THR THR
SEQRES 10 A 217 VAL ARG ALA ALA ILE ALA ASP GLY ALA LYS PRO SER ASP
SEQRES 11 A 217 LEU ASN ARG PRO GLY HIS VAL PHE PRO LEU ARG ALA GLN
SEQRES 12 A 217 ALA GLY GLY VAL LEU THR ARG GLY GLY HIS THR GLU ALA
SEQRES 13 A 217 THR ILE ASP LEU MET THR LEU ALA GLY PHE LYS PRO ALA
SEQRES 14 A 217 GLY VAL LEU CYS GLU LEU THR ASN ASP ASP GLY THR MET
SEQRES 15 A 217 ALA ARG ALA PRO GLU CYS ILE GLU PHE ALA ASN LYS HIS
SEQRES 16 A 217 ASN MET ALA LEU VAL THR ILE GLU ASP LEU VAL ALA TYR
SEQRES 17 A 217 ARG GLN ALA HIS GLU ARG LYS ALA SER
HELIX 1 1 PHE A 13 GLU A 25 1 13
HELIX 2 2 THR A 51 GLY A 62 1 12
HELIX 3 3 THR A 71 LEU A 78 1 8
HELIX 4 4 ALA A 112 ILE A 122 1 11
HELIX 5 5 THR A 154 LEU A 163 1 10
HELIX 6 6 ARG A 184 MET A 197 1 14
HELIX 7 7 ILE A 202 ARG A 214 1 13
SHEET 1 A 2 VAL A 29 LEU A 32 0
SHEET 2 A 2 ALA A 198 THR A 201 1 O ALA A 198 N MET A 30
SHEET 1 B 2 CYS A 67 ILE A 70 0
SHEET 2 B 2 PHE A 138 ARG A 141 1 O PHE A 138 N LEU A 68
CISPEP 1 ARG A 133 PRO A 134 1 8.06
CISPEP 2 ARG A 133 PRO A 134 2 7.20
CISPEP 3 ARG A 133 PRO A 134 3 7.92
CISPEP 4 ARG A 133 PRO A 134 4 8.69
CISPEP 5 ARG A 133 PRO A 134 5 7.02
CISPEP 6 ARG A 133 PRO A 134 6 1.90
CISPEP 7 ARG A 133 PRO A 134 7 -9.52
CISPEP 8 ARG A 133 PRO A 134 8 8.06
CISPEP 9 ARG A 133 PRO A 134 9 18.19
CISPEP 10 ARG A 133 PRO A 134 10 -8.72
CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 1.000000 0.000000 0.000000 0.00000
SCALE2 0.000000 1.000000 0.000000 0.00000
SCALE3 0.000000 0.000000 1.000000 0.00000
MODEL 1
Complete list - r 25 2 Bytes