Header list of 1idz.pdb file
Complete list - v 3 2 Bytes
HEADER DNA BINDING PROTEIN 15-AUG-96 1IDZ
TITLE STRUCTURE OF MYB TRANSFORMING PROTEIN, NMR, 20 STRUCTURES
COMPND MOL_ID: 1;
COMPND 2 MOLECULE: MOUSE C-MYB DNA-BINDING DOMAIN REPEAT 3;
COMPND 3 CHAIN: A;
COMPND 4 ENGINEERED: YES;
COMPND 5 MUTATION: YES
SOURCE MOL_ID: 1;
SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS;
SOURCE 3 ORGANISM_COMMON: HOUSE MOUSE;
SOURCE 4 ORGANISM_TAXID: 10090;
SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI;
SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562;
SOURCE 7 EXPRESSION_SYSTEM_VECTOR: PAR2156NCOI;
SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PRP3
KEYWDS PROTOONCOGENE PRODUCT, DNA-BINDING PROTEIN, DNA BINDING PROTEIN
EXPDTA SOLUTION NMR
NUMMDL 20
AUTHOR K.FURUKAWA,M.ODA,H.NAKAMURA
REVDAT 3 03-NOV-21 1IDZ 1 KEYWDS REMARK SEQADV
REVDAT 2 24-FEB-09 1IDZ 1 VERSN
REVDAT 1 23-DEC-96 1IDZ 0
JRNL AUTH K.FURUKAWA,M.ODA,H.NAKAMURA
JRNL TITL A SMALL ENGINEERED PROTEIN LACKS STRUCTURAL UNIQUENESS BY
JRNL TITL 2 INCREASING THE SIDE-CHAIN CONFORMATIONAL ENTROPY.
JRNL REF PROC.NATL.ACAD.SCI.USA V. 93 13583 1996
JRNL REFN ISSN 0027-8424
JRNL PMID 8942977
JRNL DOI 10.1073/PNAS.93.24.13583
REMARK 1
REMARK 1 REFERENCE 1
REMARK 1 AUTH K.OGATA,S.MORIKAWA,H.NAKAMURA,H.HOJO,S.YOSHIMURA,R.ZHANG,
REMARK 1 AUTH 2 S.AIMOTO,Y.AMETANI,Z.HIRATA,A.SARAI,ET AL.
REMARK 1 TITL COMPARISON OF THE FREE AND DNA-COMPLEXED FORMS OF THE
REMARK 1 TITL 2 DNA-BINDING DOMAIN FROM C-MYB
REMARK 1 REF NAT.STRUCT.BIOL. V. 2 309 1995
REMARK 1 REFN ISSN 1072-8368
REMARK 1 REFERENCE 2
REMARK 1 AUTH K.OGATA,S.MORIKAWA,H.NAKAMURA,A.SEKIKAWA,T.INOUE,H.KANAI,
REMARK 1 AUTH 2 A.SARAI,S.ISHII,Y.NISHIMURA
REMARK 1 TITL SOLUTION STRUCTURE OF A SPECIFIC DNA COMPLEX OF THE MYB
REMARK 1 TITL 2 DNA-BINDING DOMAIN WITH COOPERATIVE RECOGNITION HELICES
REMARK 1 REF CELL(CAMBRIDGE,MASS.) V. 79 639 1994
REMARK 1 REFN ISSN 0092-8674
REMARK 1 REFERENCE 3
REMARK 1 AUTH K.OGATA,H.HOJO,S.AIMOTO,T.NAKAI,H.NAKAMURA,A.SARAI,S.ISHII,
REMARK 1 AUTH 2 Y.NISHIMURA
REMARK 1 TITL SOLUTION STRUCTURE OF A DNA-BINDING UNIT OF MYB: A
REMARK 1 TITL 2 HELIX-TURN-HELIX-RELATED MOTIF WITH CONSERVED TRYPTOPHANS
REMARK 1 TITL 3 FORMING A HYDROPHOBIC CORE
REMARK 1 REF PROC.NATL.ACAD.SCI.USA V. 89 6428 1992
REMARK 1 REFN ISSN 0027-8424
REMARK 2
REMARK 2 RESOLUTION. NOT APPLICABLE.
REMARK 3
REMARK 3 REFINEMENT.
REMARK 3 PROGRAM : AMBER
REMARK 3 AUTHORS : MORIKAMI,NAKAI,KIDERA,SAITO,NAKAMURA
REMARK 3
REMARK 3 OTHER REFINEMENT REMARKS: NULL
REMARK 4
REMARK 4 1IDZ COMPLIES WITH FORMAT V. 3.15, 01-DEC-08
REMARK 100
REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY BNL.
REMARK 100 THE DEPOSITION ID IS D_1000174119.
REMARK 210
REMARK 210 EXPERIMENTAL DETAILS
REMARK 210 EXPERIMENT TYPE : NMR
REMARK 210 TEMPERATURE (KELVIN) : 283
REMARK 210 PH : 5.0
REMARK 210 IONIC STRENGTH : NULL
REMARK 210 PRESSURE : NULL
REMARK 210 SAMPLE CONTENTS : NULL
REMARK 210
REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-1H NOESY
REMARK 210 SPECTROMETER FIELD STRENGTH : 600.13 MHZ
REMARK 210 SPECTROMETER MODEL : AMX-600
REMARK 210 SPECTROMETER MANUFACTURER : BRUKER
REMARK 210
REMARK 210 STRUCTURE DETERMINATION.
REMARK 210 SOFTWARE USED : EMBOSS
REMARK 210 METHOD USED : SIMULATED ANNEALING IN 4D
REMARK 210
REMARK 210 CONFORMERS, NUMBER CALCULATED : 120
REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20
REMARK 210 CONFORMERS, SELECTION CRITERIA : 0.1 ANGSTROM MAXIMUM DISTANCE
REMARK 210 VIOLATION
REMARK 210
REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : NULL
REMARK 210
REMARK 210 REMARK: NULL
REMARK 215
REMARK 215 NMR STUDY
REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION
REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT
REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON
REMARK 215 THESE RECORDS ARE MEANINGLESS.
REMARK 300
REMARK 300 BIOMOLECULE: 1
REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM
REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN
REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON
REMARK 300 BURIED SURFACE AREA.
REMARK 350
REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN
REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE
REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS
REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND
REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN.
REMARK 350
REMARK 350 BIOMOLECULE: 1
REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC
REMARK 350 APPLY THE FOLLOWING TO CHAINS: A
REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000
REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000
REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000
REMARK 500
REMARK 500 GEOMETRY AND STEREOCHEMISTRY
REMARK 500 SUBTOPIC: TORSION ANGLES
REMARK 500
REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS:
REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER;
REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE).
REMARK 500
REMARK 500 STANDARD TABLE:
REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2)
REMARK 500
REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI-
REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400
REMARK 500
REMARK 500 M RES CSSEQI PSI PHI
REMARK 500 1 GLU A 141 47.52 -156.17
REMARK 500 1 LYS A 143 -69.78 69.57
REMARK 500 1 ASN A 164 22.33 -160.76
REMARK 500 1 LYS A 192 90.39 67.03
REMARK 500 2 LYS A 143 -43.54 -177.90
REMARK 500 2 ASN A 164 30.91 -83.19
REMARK 500 3 VAL A 142 -124.85 36.95
REMARK 500 3 LYS A 143 59.97 28.75
REMARK 500 3 SER A 146 119.09 73.25
REMARK 500 3 ASN A 164 22.30 -160.57
REMARK 500 3 LYS A 192 105.47 59.75
REMARK 500 4 LYS A 143 -23.77 -140.28
REMARK 500 4 SER A 146 35.81 -150.73
REMARK 500 4 ASN A 164 45.07 -81.56
REMARK 500 4 ARG A 165 69.97 -102.27
REMARK 500 4 THR A 188 -61.06 -104.99
REMARK 500 5 VAL A 142 -41.81 -137.98
REMARK 500 5 LYS A 143 102.60 -164.22
REMARK 500 5 SER A 146 65.83 -162.30
REMARK 500 5 ALA A 167 -71.66 -50.74
REMARK 500 5 THR A 188 -69.84 -104.09
REMARK 500 6 VAL A 142 -177.13 48.12
REMARK 500 6 LYS A 143 -160.51 51.06
REMARK 500 6 LYS A 144 32.50 -91.06
REMARK 500 6 THR A 188 -39.36 -157.33
REMARK 500 6 ARG A 190 100.77 62.27
REMARK 500 7 GLU A 141 92.41 62.36
REMARK 500 7 LYS A 143 51.86 38.55
REMARK 500 7 ASN A 164 25.05 -160.35
REMARK 500 7 ARG A 176 -176.90 57.32
REMARK 500 7 THR A 188 -77.46 -79.24
REMARK 500 7 LYS A 192 82.91 56.54
REMARK 500 8 VAL A 142 46.42 39.14
REMARK 500 8 LYS A 143 41.18 39.75
REMARK 500 8 THR A 188 -70.67 -82.36
REMARK 500 9 LYS A 143 -70.35 -84.02
REMARK 500 9 LYS A 144 52.94 -90.10
REMARK 500 9 ASN A 164 28.05 -79.95
REMARK 500 9 SER A 187 -82.39 -79.29
REMARK 500 9 MET A 189 -40.27 -172.78
REMARK 500 10 GLU A 141 -72.75 66.76
REMARK 500 10 VAL A 142 175.92 62.98
REMARK 500 10 LYS A 143 -31.43 85.32
REMARK 500 10 SER A 146 -75.37 -66.35
REMARK 500 10 TRP A 166 35.93 -77.39
REMARK 500 10 SER A 187 35.89 -84.54
REMARK 500 10 THR A 188 -33.43 -160.38
REMARK 500 10 ARG A 191 -176.07 63.62
REMARK 500 11 THR A 145 88.83 -66.20
REMARK 500 11 ASP A 152 -51.39 -124.38
REMARK 500
REMARK 500 THIS ENTRY HAS 103 RAMACHANDRAN OUTLIERS.
REMARK 500
REMARK 500 REMARK: NULL
REMARK 500
REMARK 500 GEOMETRY AND STEREOCHEMISTRY
REMARK 500 SUBTOPIC: PLANAR GROUPS
REMARK 500
REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL
REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE
REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN
REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS
REMARK 500 AN RMSD GREATER THAN THIS VALUE
REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER;
REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE).
REMARK 500
REMARK 500 M RES CSSEQI RMS TYPE
REMARK 500 12 ARG A 153 0.09 SIDE CHAIN
REMARK 500
REMARK 500 REMARK: NULL
REMARK 900
REMARK 900 RELATED ENTRIES
REMARK 900 RELATED ID: 1IDY RELATED DB: PDB
REMARK 900 REPRESENTATIVE STRUCTURE
DBREF 1IDZ A 141 193 UNP P06876 MYB_MOUSE 141 193
SEQADV 1IDZ LEU A 155 UNP P06876 ILE 155 ENGINEERED MUTATION
SEQRES 1 A 54 MET GLU VAL LYS LYS THR SER TRP THR GLU GLU GLU ASP
SEQRES 2 A 54 ARG ILE LEU TYR GLN ALA HIS LYS ARG LEU GLY ASN ARG
SEQRES 3 A 54 TRP ALA GLU ILE ALA LYS LEU LEU PRO GLY ARG THR ASP
SEQRES 4 A 54 ASN ALA ILE LYS ASN HIS TRP ASN SER THR MET ARG ARG
SEQRES 5 A 54 LYS VAL
HELIX 1 1 GLU A 149 LEU A 162 1 14
HELIX 2 2 TRP A 166 LEU A 172 1 7
HELIX 3 3 ASP A 178 SER A 187 1 10
CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 1.000000 0.000000 0.000000 0.00000
SCALE2 0.000000 1.000000 0.000000 0.00000
SCALE3 0.000000 0.000000 1.000000 0.00000
MODEL 1
Complete list - v 3 2 Bytes