Header list of 1i35.pdb file
Complete list - b 23 2 Bytes
HEADER TRANSFERASE 13-FEB-01 1I35
TITLE SOLUTION STRUCTURE OF THE RAS-BINDING DOMAIN OF THE PROTEIN KINASE
TITLE 2 BYR2 FROM SCHIZOSACCHAROMYCES POMBE
COMPND MOL_ID: 1;
COMPND 2 MOLECULE: PROTEIN KINASE BYR2;
COMPND 3 CHAIN: A;
COMPND 4 FRAGMENT: RAS-BINDING DOMAIN;
COMPND 5 EC: 2.7.1.-;
COMPND 6 ENGINEERED: YES
SOURCE MOL_ID: 1;
SOURCE 2 ORGANISM_SCIENTIFIC: SCHIZOSACCHAROMYCES POMBE;
SOURCE 3 ORGANISM_COMMON: FISSION YEAST;
SOURCE 4 ORGANISM_TAXID: 4896;
SOURCE 5 GENE: BYR2 (AMINO ACIDS 71 - 165);
SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI;
SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562;
SOURCE 8 EXPRESSION_SYSTEM_STRAIN: B121 DE3;
SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID;
SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PGEX4T3 (PHARMACIA)
KEYWDS UBIQUITIN SUPERFOLD, TRANSFERASE
EXPDTA SOLUTION NMR
NUMMDL 10
AUTHOR W.GRONWALD,F.HUBER,P.GRUNEWALD,M.SPORNER,S.WOHLGEMUTH,C.HERRMANN,
AUTHOR 2 H.R.KALBITZER
REVDAT 3 23-FEB-22 1I35 1 REMARK
REVDAT 2 24-FEB-09 1I35 1 VERSN
REVDAT 1 12-DEC-01 1I35 0
JRNL AUTH W.GRONWALD,F.HUBER,P.GRUNEWALD,M.SPORNER,S.WOHLGEMUTH,
JRNL AUTH 2 C.HERRMANN,H.R.KALBITZER
JRNL TITL SOLUTION STRUCTURE OF THE RAS BINDING DOMAIN OF THE PROTEIN
JRNL TITL 2 KINASE BYR2 FROM SCHIZOSACCHAROMYCES POMBE.
JRNL REF STRUCTURE V. 9 1029 2001
JRNL REFN ISSN 0969-2126
JRNL PMID 11709167
JRNL DOI 10.1016/S0969-2126(01)00671-2
REMARK 1
REMARK 1 REFERENCE 1
REMARK 1 AUTH W.GRONWALD,E.BRUNNER,F.HUBER,M.WENZLER,C.HERRMANN,
REMARK 1 AUTH 2 H.R.KALBITZER
REMARK 1 TITL OVERCOMING THE PROBLEMS ASSOCIATED WITH POOR SPECTRA QUALITY
REMARK 1 TITL 2 OF THE PROTEIN KINASE BYR2 USING RESIDUAL DIPOLAR COUPLINGS
REMARK 1 REF PROTEIN SCI. V. 10 1260 2001
REMARK 1 REFN ISSN 0961-8368
REMARK 1 DOI 10.1110/PS.43201
REMARK 1 REFERENCE 2
REMARK 1 AUTH F.HUBER,W.GRONWALD,S.WOHLGEMUTH,C.HERRMANN,M.GEYER,
REMARK 1 AUTH 2 A.WITTINGHOFER,H.R.KALBITZER
REMARK 1 TITL LETTER TO THE EDITOR: SEQUENTIAL NMR ASSIGNMENT OF THE
REMARK 1 TITL 2 RAS-BINDING DOMAIN OF BYR2
REMARK 1 REF J.BIOMOL.NMR V. 16 355 2000
REMARK 1 REFN ISSN 0925-2738
REMARK 1 DOI 10.1023/A:1008335420475
REMARK 2
REMARK 2 RESOLUTION. NOT APPLICABLE.
REMARK 3
REMARK 3 REFINEMENT.
REMARK 3 PROGRAM : UXNMR 2.6, CNS 1.0
REMARK 3 AUTHORS : BRUKER SOFTWARE DEPARTMENT (UXNMR), BRUENGER,
REMARK 3 A.T., ADAMS, P.D., CLORE, G.M., DELANO, W.L., GROS,
REMARK 3 P., GROSSE-KUNSTLEVE, JIANG, R.W., KUSZEWSKI, J.,
REMARK 3 NILGES, M., PANNU, N.S., READ, R.J., RICE, L.M.,
REMARK 3 SIMONSON, T. & WARREN, G.L. (CNS)
REMARK 3
REMARK 3 OTHER REFINEMENT REMARKS: STRUCTURES ARE BASED ON A TOTAL
REMARK 3 OF 824 NOE-RESTRAINTS, 88 BACKBONE
REMARK 3 DIHEDRAL ANGLE RESTRAINS, 29 HYDROGEN
REMARK 3 BONDS AND 28 RESIDUAL DIPOLAR
REMARK 3 COUPLINGS
REMARK 4
REMARK 4 1I35 COMPLIES WITH FORMAT V. 3.15, 01-DEC-08
REMARK 100
REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 14-FEB-01.
REMARK 100 THE DEPOSITION ID IS D_1000012844.
REMARK 210
REMARK 210 EXPERIMENTAL DETAILS
REMARK 210 EXPERIMENT TYPE : NMR
REMARK 210 TEMPERATURE (KELVIN) : 298; 298; 298; 298; 298; 305
REMARK 210 PH : 6.9; 6.9; 6.9; 6.9; 6.9; 6.9
REMARK 210 IONIC STRENGTH : 200 MM DEUTERATED GLYCINE, 20 MM
REMARK 210 PHOSPHATE BUFFER; 200 MM
REMARK 210 DEUTERATED GLYCINE, 20 MM
REMARK 210 PHOSPHATE BUFFER; 200 MM
REMARK 210 DEUTERATED GLYCINE, 20 MM
REMARK 210 PHOSPHATE BUFFER; 200 MM
REMARK 210 DEUTERATED GLYCINE, 20 MM
REMARK 210 PHOSPHATE BUFFER; 200 MM
REMARK 210 DEUTERATED GLYCINE, 20 MM
REMARK 210 PHOSPHATE BUFFER; 200 MM
REMARK 210 DEUTERATED GLYCINE, 20 MM
REMARK 210 PHOSPHATE BUFFER
REMARK 210 PRESSURE : AMBIENT; AMBIENT; AMBIENT;
REMARK 210 AMBIENT; AMBIENT; AMBIENT
REMARK 210 SAMPLE CONTENTS : 1.2 MM BYR2 UNLABELED,25 MM DTE,
REMARK 210 200 MM DEUTERATED GLYCINE, 20 MM
REMARK 210 PHOSPHATE BUFFER, 0.5 MM EDTA,
REMARK 210 0.5 MM NAN3, 0.1 MM DSS, 90% H2O/
REMARK 210 10% D2O; 1.2 MM BYR2 UNLABELED,
REMARK 210 25 MM DTE, 200 MM DEUTERATED
REMARK 210 GLYCINE, 20 MM PHOSPHATE BUFFER,
REMARK 210 0.5 MM EDTA, 0.5 MM NAN3, 0.1 MM
REMARK 210 DSS, 100% D2O; 1.0 MM BYR2 15N-
REMARK 210 LABELED,25 MM DTE, 200 MM
REMARK 210 DEUTERATED GLYCINE, 20 MM
REMARK 210 PHOSPHATE BUFFER, 0.5 MM EDTA,
REMARK 210 0.5 MM NAN3, 0.1 MM DSS, 90% H2O/
REMARK 210 10% D2O; 1.0 MM BYR2 15N-13C-
REMARK 210 LABELED,25 MM DTE, 200 MM
REMARK 210 DEUTERATED GLYCINE, 20 MM
REMARK 210 PHOSPHATE BUFFER, 0.5 MM EDTA,
REMARK 210 0.5 MM NAN3, 0.1 MM DSS, 90% H2O/
REMARK 210 10% D2O; 0.7 MM BYR2 15N-13C-
REMARK 210 LABELED,25 MM DTE, 200 MM
REMARK 210 DEUTERATED GLYCINE, 20 MM
REMARK 210 PHOSPHATE BUFFER, 0.5 MM EDTA,
REMARK 210 0.5 MM NAN3, 0.1 MM DSS, 100%
REMARK 210 D2O; 1.0 MM BYR2 15N-LABELED,25
REMARK 210 MM DTE, 200 MM DEUTERATED
REMARK 210 GLYCINE, 20 MM PHOSPHATE BUFFER,
REMARK 210 0.5 MM EDTA, 0.5 MM NAN3, 0.1 MM
REMARK 210 DSS, 5 WT.-% PHOSPHOLIPID
REMARK 210 BICELLES, 90% H2O/10% D2O
REMARK 210
REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D NOESY; 3D_15N
REMARK 210 -SEPARATED_NOESY; HNHA; 3D_13C-
REMARK 210 SEPARATED_NOESY; 2D-HSQC WITH NO
REMARK 210 DECOUPLING OF 1H DURING
REMARK 210 T1(MEASUREMENT OF RESIDUAL
REMARK 210 DIPOLAR COUPLINGS)
REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ; 800 MHZ
REMARK 210 SPECTROMETER MODEL : DRX
REMARK 210 SPECTROMETER MANUFACTURER : BRUKER
REMARK 210
REMARK 210 STRUCTURE DETERMINATION.
REMARK 210 SOFTWARE USED : UXNMR 2.6, AURELIA 2.7.1,
REMARK 210 AUREMOL 0.6, CNS 1.0
REMARK 210 METHOD USED : HIGH TEMPERATURE TORSION ANGLE
REMARK 210 DYNAMICS. FIRST COOLING STAGE
REMARK 210 USING TORSION ANGLE DYNAMICS.
REMARK 210 SECOND COOLING STAGE USING
REMARK 210 CARTESIAN DYNAMICS. FINAL ENERGY
REMARK 210 MINIMIZATION.
REMARK 210
REMARK 210 CONFORMERS, NUMBER CALCULATED : 200
REMARK 210 CONFORMERS, NUMBER SUBMITTED : 10
REMARK 210 CONFORMERS, SELECTION CRITERIA : THE SUBMITTED CONFORMER MODELS
REMARK 210 ARE THE 10 STRUCTURES WITH THE
REMARK 210 LOWEST TOTAL ENERGY
REMARK 210
REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1
REMARK 210
REMARK 210 REMARK: NULL
REMARK 215
REMARK 215 NMR STUDY
REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION
REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT
REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON
REMARK 215 THESE RECORDS ARE MEANINGLESS.
REMARK 300
REMARK 300 BIOMOLECULE: 1
REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM
REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN
REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON
REMARK 300 BURIED SURFACE AREA.
REMARK 350
REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN
REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE
REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS
REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND
REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN.
REMARK 350
REMARK 350 BIOMOLECULE: 1
REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC
REMARK 350 APPLY THE FOLLOWING TO CHAINS: A
REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000
REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000
REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000
REMARK 500
REMARK 500 GEOMETRY AND STEREOCHEMISTRY
REMARK 500 SUBTOPIC: CLOSE CONTACTS
REMARK 500
REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT.
REMARK 500
REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE
REMARK 500 O THR A 24 HB3 ALA A 28 1.30
REMARK 500 O ILE A 6 HA ILE A 74 1.40
REMARK 500 O ALA A 28 HB2 PHE A 32 1.52
REMARK 500 H SER A 45 OD2 ASP A 87 1.53
REMARK 500 O GLN A 22 H ALA A 26 1.55
REMARK 500 O ARG A 4 O ASP A 71 2.08
REMARK 500 O LYS A 30 O LEU A 34 2.11
REMARK 500 O PHE A 5 O ARG A 13 2.15
REMARK 500
REMARK 500 REMARK: NULL
REMARK 500
REMARK 500 GEOMETRY AND STEREOCHEMISTRY
REMARK 500 SUBTOPIC: TORSION ANGLES
REMARK 500
REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS:
REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER;
REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE).
REMARK 500
REMARK 500 STANDARD TABLE:
REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2)
REMARK 500
REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI-
REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400
REMARK 500
REMARK 500 M RES CSSEQI PSI PHI
REMARK 500 1 CYS A 8 179.01 66.01
REMARK 500 1 ARG A 18 -11.78 165.95
REMARK 500 1 ASP A 20 163.88 73.40
REMARK 500 1 LEU A 34 -147.61 -136.93
REMARK 500 1 ASP A 36 56.42 81.37
REMARK 500 1 PHE A 40 166.92 -37.68
REMARK 500 1 GLN A 46 -89.27 -127.30
REMARK 500 1 SER A 47 -89.51 -118.43
REMARK 500 1 THR A 54 -135.87 -89.12
REMARK 500 1 GLU A 55 -96.12 -83.94
REMARK 500 1 ASN A 64 -28.18 -32.31
REMARK 500 1 SER A 66 79.02 85.92
REMARK 500 1 GLU A 69 -176.93 37.08
REMARK 500 1 ASP A 71 -92.05 -158.38
REMARK 500 1 ARG A 72 62.37 -38.29
REMARK 500 1 LYS A 80 108.77 -167.93
REMARK 500 1 PRO A 81 -160.06 -71.92
REMARK 500 1 CYS A 82 -37.69 164.24
REMARK 500 1 SER A 84 -39.71 177.40
REMARK 500 1 PHE A 85 -7.44 -56.99
REMARK 500 1 SER A 91 -27.30 -152.38
REMARK 500 1 GLU A 93 -138.26 -63.61
REMARK 500 2 CYS A 8 -136.44 34.55
REMARK 500 2 GLN A 11 -113.33 -64.16
REMARK 500 2 GLN A 16 87.53 -60.63
REMARK 500 2 ASP A 20 128.99 57.42
REMARK 500 2 LEU A 34 -152.13 -124.08
REMARK 500 2 ASP A 36 74.27 52.60
REMARK 500 2 SER A 47 -158.19 55.79
REMARK 500 2 THR A 54 -92.29 -89.45
REMARK 500 2 GLU A 55 -80.79 -135.34
REMARK 500 2 ASN A 64 84.26 67.86
REMARK 500 2 SER A 65 -78.10 66.12
REMARK 500 2 SER A 66 -101.14 -160.78
REMARK 500 2 SER A 67 148.71 55.86
REMARK 500 2 GLU A 69 -146.38 94.36
REMARK 500 2 ARG A 70 -162.57 55.47
REMARK 500 2 ASP A 71 171.02 166.47
REMARK 500 2 ARG A 72 147.22 -21.70
REMARK 500 2 LYS A 78 -12.18 55.50
REMARK 500 2 LYS A 80 102.26 167.81
REMARK 500 2 PRO A 81 -158.99 -68.32
REMARK 500 2 PRO A 83 -86.04 -69.02
REMARK 500 2 SER A 84 -32.53 168.44
REMARK 500 2 LEU A 88 -85.24 -93.30
REMARK 500 2 ARG A 89 -167.75 57.41
REMARK 500 2 SER A 91 56.91 -179.44
REMARK 500 2 TRP A 92 -8.92 71.73
REMARK 500 2 GLU A 93 -49.63 114.94
REMARK 500 3 CYS A 8 -165.75 62.95
REMARK 500
REMARK 500 THIS ENTRY HAS 249 RAMACHANDRAN OUTLIERS.
REMARK 500
REMARK 500 REMARK: NULL
DBREF 1I35 A 1 95 UNP P28829 BYR2_SCHPO 71 165
SEQRES 1 A 95 CYS ILE LEU ARG PHE ILE ALA CYS ASN GLY GLN THR ARG
SEQRES 2 A 95 ALA VAL GLN SER ARG GLY ASP TYR GLN LYS THR LEU ALA
SEQRES 3 A 95 ILE ALA LEU LYS LYS PHE SER LEU GLU ASP ALA SER LYS
SEQRES 4 A 95 PHE ILE VAL CYS VAL SER GLN SER SER ARG ILE LYS LEU
SEQRES 5 A 95 ILE THR GLU GLU GLU PHE LYS GLN ILE CYS PHE ASN SER
SEQRES 6 A 95 SER SER PRO GLU ARG ASP ARG LEU ILE ILE VAL PRO LYS
SEQRES 7 A 95 GLU LYS PRO CYS PRO SER PHE GLU ASP LEU ARG ARG SER
SEQRES 8 A 95 TRP GLU ILE GLU
HELIX 1 1 GLY A 19 SER A 33 1 15
HELIX 2 2 ASP A 36 PHE A 40 5 5
HELIX 3 3 GLU A 56 ASN A 64 1 9
HELIX 4 4 SER A 84 ARG A 89 1 6
SHEET 1 A 5 GLN A 11 GLN A 16 0
SHEET 2 A 5 ILE A 2 ALA A 7 -1 N LEU A 3 O VAL A 15
SHEET 3 A 5 LEU A 73 VAL A 76 1 O LEU A 73 N ILE A 6
SHEET 4 A 5 ILE A 41 SER A 45 -1 N ILE A 41 O VAL A 76
SHEET 5 A 5 ILE A 50 ILE A 53 -1 N LYS A 51 O VAL A 44
CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 1.000000 0.000000 0.000000 0.00000
SCALE2 0.000000 1.000000 0.000000 0.00000
SCALE3 0.000000 0.000000 1.000000 0.00000
MODEL 1
Complete list - b 23 2 Bytes