Header list of 1i1s.pdb file
Complete list - b 23 2 Bytes
HEADER TRANSCRIPTION 02-FEB-01 1I1S
TITLE SOLUTION STRUCTURE OF THE TRANSCRIPTIONAL ACTIVATION DOMAIN OF THE
TITLE 2 BACTERIOPHAGE T4 PROTEIN MOTA
COMPND MOL_ID: 1;
COMPND 2 MOLECULE: MOTA;
COMPND 3 CHAIN: A;
COMPND 4 FRAGMENT: N-TERMINAL DOMAIN, RESIDUES 1-96;
COMPND 5 ENGINEERED: YES
SOURCE MOL_ID: 1;
SOURCE 2 ORGANISM_SCIENTIFIC: ENTEROBACTERIA PHAGE T4;
SOURCE 3 ORGANISM_TAXID: 10665;
SOURCE 4 GENE: MOTA;
SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3);
SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008;
SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3);
SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID;
SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET3C
KEYWDS MOTNF, COILED-COIL, CRYSTAL PACKING, TRANSCRIPTION
EXPDTA SOLUTION NMR
NUMMDL 20
AUTHOR N.LI,W.ZHANG,S.W.WHITE,R.W.KRIWACKI
REVDAT 5 23-FEB-22 1I1S 1 REMARK
REVDAT 4 24-FEB-09 1I1S 1 VERSN
REVDAT 3 01-APR-03 1I1S 1 JRNL
REVDAT 2 18-APR-01 1I1S 1 JRNL
REVDAT 1 14-FEB-01 1I1S 0
JRNL AUTH N.LI,W.ZHANG,S.W.WHITE,R.W.KRIWACKI
JRNL TITL SOLUTION STRUCTURE OF THE TRANSCRIPTIONAL ACTIVATION DOMAIN
JRNL TITL 2 OF THE BACTERIOPHAGE T4 PROTEIN, MOTA.
JRNL REF BIOCHEMISTRY V. 40 4293 2001
JRNL REFN ISSN 0006-2960
JRNL PMID 11284685
JRNL DOI 10.1021/BI0028284
REMARK 2
REMARK 2 RESOLUTION. NOT APPLICABLE.
REMARK 3
REMARK 3 REFINEMENT.
REMARK 3 PROGRAM : FELIX 98, X-PLOR 98
REMARK 3 AUTHORS : MSI (FELIX), BRUNGER (X-PLOR)
REMARK 3
REMARK 3 OTHER REFINEMENT REMARKS: THE STRUCTURES ARE BASED ON 3186 NOE
REMARK 3 -DERIVED DISTANCE CONSTRAINTS, 64 DIHEDRAL ANGLE RESTRAINTS, 152
REMARK 3 DISTANCE RESTRAINTS FROM HYDROGEN BONDS.
REMARK 4
REMARK 4 1I1S COMPLIES WITH FORMAT V. 3.15, 01-DEC-08
REMARK 100
REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 05-FEB-01.
REMARK 100 THE DEPOSITION ID IS D_1000012796.
REMARK 210
REMARK 210 EXPERIMENTAL DETAILS
REMARK 210 EXPERIMENT TYPE : NMR
REMARK 210 TEMPERATURE (KELVIN) : 301; 301
REMARK 210 PH : 6.5; 6.5
REMARK 210 IONIC STRENGTH : 200 MM POTASSIUM PHOSPHATE; 200
REMARK 210 MM POTASSIUM PHOSPHATE
REMARK 210 PRESSURE : AMBIENT; AMBIENT
REMARK 210 SAMPLE CONTENTS : 2MM MOTNF U-15N; 2MM MOTNF U
REMARK 210 -13C,15N
REMARK 210
REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D_15N-SEPARATED_NOESY; 3D_13C
REMARK 210 -SEPARATED_NOESY; HNHA
REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ
REMARK 210 SPECTROMETER MODEL : INOVA
REMARK 210 SPECTROMETER MANUFACTURER : VARIAN
REMARK 210
REMARK 210 STRUCTURE DETERMINATION.
REMARK 210 SOFTWARE USED : FELIX 98, X-PLOR 98
REMARK 210 METHOD USED : SIMULATED ANNEALING, MOLECULAR
REMARK 210 DYNAMICS, TORSION ANGLE DYNAMICS
REMARK 210
REMARK 210 CONFORMERS, NUMBER CALCULATED : 200
REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20
REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST
REMARK 210 ENERGY
REMARK 210
REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1
REMARK 210
REMARK 210 REMARK: NULL
REMARK 215
REMARK 215 NMR STUDY
REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION
REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT
REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON
REMARK 215 THESE RECORDS ARE MEANINGLESS.
REMARK 300
REMARK 300 BIOMOLECULE: 1
REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM
REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN
REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON
REMARK 300 BURIED SURFACE AREA.
REMARK 350
REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN
REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE
REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS
REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND
REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN.
REMARK 350
REMARK 350 BIOMOLECULE: 1
REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC
REMARK 350 APPLY THE FOLLOWING TO CHAINS: A
REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000
REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000
REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000
REMARK 500
REMARK 500 GEOMETRY AND STEREOCHEMISTRY
REMARK 500 SUBTOPIC: CLOSE CONTACTS
REMARK 500
REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT.
REMARK 500
REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE
REMARK 500 H ASN A 16 HG1 THR A 19 1.34
REMARK 500
REMARK 500 REMARK: NULL
REMARK 500
REMARK 500 GEOMETRY AND STEREOCHEMISTRY
REMARK 500 SUBTOPIC: TORSION ANGLES
REMARK 500
REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS:
REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER;
REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE).
REMARK 500
REMARK 500 STANDARD TABLE:
REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2)
REMARK 500
REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI-
REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400
REMARK 500
REMARK 500 M RES CSSEQI PSI PHI
REMARK 500 1 SER A 2 158.93 71.19
REMARK 500 1 ASN A 12 68.05 105.52
REMARK 500 1 VAL A 14 -61.78 -94.05
REMARK 500 1 ILE A 32 -161.06 -50.46
REMARK 500 1 LEU A 44 -66.04 -95.14
REMARK 500 1 ASP A 67 62.18 -150.14
REMARK 500 1 ALA A 91 81.87 59.91
REMARK 500 1 LEU A 94 -55.89 -153.13
REMARK 500 1 LEU A 95 -62.61 -127.89
REMARK 500 2 SER A 2 -69.39 -167.72
REMARK 500 2 ASN A 12 64.49 107.82
REMARK 500 2 VAL A 14 -61.29 -97.43
REMARK 500 2 ASN A 16 -156.07 -90.99
REMARK 500 2 ILE A 32 -162.24 -50.90
REMARK 500 2 ASP A 67 61.00 -150.10
REMARK 500 2 ALA A 91 82.94 56.58
REMARK 500 2 LEU A 94 -52.01 -134.19
REMARK 500 3 ASN A 12 63.72 109.33
REMARK 500 3 VAL A 14 -61.63 -97.44
REMARK 500 3 ASN A 16 -159.18 -95.42
REMARK 500 3 ILE A 32 -161.22 -51.85
REMARK 500 3 LEU A 44 -68.50 -96.96
REMARK 500 3 LEU A 61 97.95 -161.11
REMARK 500 3 ALA A 91 82.92 55.34
REMARK 500 3 LEU A 94 -57.90 -151.74
REMARK 500 3 LEU A 95 -63.94 -163.00
REMARK 500 4 SER A 2 173.34 64.34
REMARK 500 4 ASN A 12 63.68 109.45
REMARK 500 4 VAL A 14 -62.39 -97.31
REMARK 500 4 ASN A 16 -159.35 -93.44
REMARK 500 4 ILE A 32 -161.40 -52.26
REMARK 500 4 LEU A 44 -69.05 -98.15
REMARK 500 4 LEU A 61 97.63 -160.15
REMARK 500 4 ASP A 67 62.28 -150.04
REMARK 500 4 GLU A 89 -61.32 -100.44
REMARK 500 4 ALA A 91 84.26 66.01
REMARK 500 4 GLU A 93 77.82 -63.04
REMARK 500 4 LEU A 95 -59.94 -135.45
REMARK 500 5 ASN A 12 64.81 108.50
REMARK 500 5 VAL A 14 -61.83 -96.88
REMARK 500 5 ASN A 16 -156.71 -91.90
REMARK 500 5 ILE A 32 -160.75 -51.62
REMARK 500 5 ASP A 67 63.87 -150.02
REMARK 500 5 ALA A 91 83.60 64.56
REMARK 500 5 GLU A 93 77.18 -64.50
REMARK 500 6 SER A 2 -176.17 62.85
REMARK 500 6 ASN A 12 -25.32 177.53
REMARK 500 6 VAL A 14 -64.67 -96.98
REMARK 500 6 ILE A 32 -160.72 -51.19
REMARK 500 6 LEU A 61 97.86 -160.10
REMARK 500
REMARK 500 THIS ENTRY HAS 183 RAMACHANDRAN OUTLIERS.
REMARK 500
REMARK 500 REMARK: NULL
REMARK 500
REMARK 500 GEOMETRY AND STEREOCHEMISTRY
REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS
REMARK 500
REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH
REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED
REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND
REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES.
REMARK 500 MODEL OMEGA
REMARK 500 MET A 1 SER A 2 1 116.56
REMARK 500 SER A 2 LYS A 3 1 -119.52
REMARK 500 ASN A 16 GLU A 17 1 150.00
REMARK 500 PHE A 31 ILE A 32 1 134.86
REMARK 500 ILE A 32 THR A 33 1 139.66
REMARK 500 VAL A 40 HIS A 41 1 -145.39
REMARK 500 HIS A 41 PRO A 42 1 144.07
REMARK 500 LYS A 59 GLY A 60 1 -122.11
REMARK 500 GLY A 60 LEU A 61 1 70.31
REMARK 500 LEU A 61 VAL A 62 1 105.18
REMARK 500 SER A 65 GLY A 66 1 -125.51
REMARK 500 GLY A 66 ASP A 67 1 72.84
REMARK 500 ASP A 67 GLY A 68 1 134.83
REMARK 500 PRO A 92 GLU A 93 1 -95.76
REMARK 500 GLU A 93 LEU A 94 1 -140.62
REMARK 500 MET A 1 SER A 2 2 -142.10
REMARK 500 ASN A 16 GLU A 17 2 147.32
REMARK 500 PHE A 31 ILE A 32 2 136.50
REMARK 500 ILE A 32 THR A 33 2 141.69
REMARK 500 HIS A 41 PRO A 42 2 126.63
REMARK 500 PRO A 42 ASP A 43 2 -144.79
REMARK 500 LYS A 59 GLY A 60 2 -121.87
REMARK 500 GLY A 60 LEU A 61 2 69.97
REMARK 500 LEU A 61 VAL A 62 2 107.12
REMARK 500 SER A 65 GLY A 66 2 -125.64
REMARK 500 GLY A 66 ASP A 67 2 72.59
REMARK 500 ASP A 67 GLY A 68 2 136.57
REMARK 500 PRO A 92 GLU A 93 2 -91.84
REMARK 500 LEU A 95 LYS A 96 2 -114.03
REMARK 500 ASN A 16 GLU A 17 3 149.27
REMARK 500 PHE A 31 ILE A 32 3 134.54
REMARK 500 ILE A 32 THR A 33 3 139.88
REMARK 500 HIS A 41 PRO A 42 3 129.74
REMARK 500 LYS A 59 GLY A 60 3 -121.71
REMARK 500 GLY A 60 LEU A 61 3 69.08
REMARK 500 LEU A 61 VAL A 62 3 107.71
REMARK 500 SER A 65 GLY A 66 3 -134.30
REMARK 500 GLY A 66 ASP A 67 3 66.12
REMARK 500 ASP A 67 GLY A 68 3 -148.66
REMARK 500 PRO A 92 GLU A 93 3 -84.85
REMARK 500 GLU A 93 LEU A 94 3 -149.45
REMARK 500 LEU A 95 LYS A 96 3 129.96
REMARK 500 LYS A 3 VAL A 4 4 -140.33
REMARK 500 ASN A 16 GLU A 17 4 145.95
REMARK 500 PHE A 31 ILE A 32 4 135.62
REMARK 500 ILE A 32 THR A 33 4 138.72
REMARK 500 HIS A 41 PRO A 42 4 129.39
REMARK 500 LYS A 59 GLY A 60 4 -122.37
REMARK 500 GLY A 60 LEU A 61 4 68.79
REMARK 500 LEU A 61 VAL A 62 4 104.61
REMARK 500
REMARK 500 THIS ENTRY HAS 282 NON CIS, NON-TRANS OMEGA OUTLIERS.
REMARK 500
REMARK 500 REMARK: NULL
REMARK 500
REMARK 500 GEOMETRY AND STEREOCHEMISTRY
REMARK 500 SUBTOPIC: PLANAR GROUPS
REMARK 500
REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL
REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE
REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN
REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS
REMARK 500 AN RMSD GREATER THAN THIS VALUE
REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER;
REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE).
REMARK 500
REMARK 500 M RES CSSEQI RMS TYPE
REMARK 500 1 ARG A 38 0.29 SIDE CHAIN
REMARK 500 2 ARG A 38 0.29 SIDE CHAIN
REMARK 500 3 ARG A 38 0.28 SIDE CHAIN
REMARK 500 4 ARG A 38 0.30 SIDE CHAIN
REMARK 500 5 ARG A 38 0.31 SIDE CHAIN
REMARK 500 6 ARG A 38 0.24 SIDE CHAIN
REMARK 500 7 ARG A 38 0.24 SIDE CHAIN
REMARK 500 7 TYR A 86 0.07 SIDE CHAIN
REMARK 500 8 ARG A 38 0.31 SIDE CHAIN
REMARK 500 9 ARG A 38 0.27 SIDE CHAIN
REMARK 500 9 TYR A 86 0.09 SIDE CHAIN
REMARK 500 10 ARG A 38 0.29 SIDE CHAIN
REMARK 500 11 ARG A 38 0.25 SIDE CHAIN
REMARK 500 12 ARG A 38 0.28 SIDE CHAIN
REMARK 500 13 ARG A 38 0.23 SIDE CHAIN
REMARK 500 14 ARG A 38 0.32 SIDE CHAIN
REMARK 500 15 ARG A 38 0.30 SIDE CHAIN
REMARK 500 16 ARG A 38 0.24 SIDE CHAIN
REMARK 500 17 ARG A 38 0.31 SIDE CHAIN
REMARK 500 18 ARG A 38 0.31 SIDE CHAIN
REMARK 500 19 ARG A 38 0.28 SIDE CHAIN
REMARK 500 20 ARG A 38 0.25 SIDE CHAIN
REMARK 500
REMARK 500 REMARK: NULL
REMARK 900
REMARK 900 RELATED ENTRIES
REMARK 900 RELATED ID: 1BJA RELATED DB: PDB
REMARK 900 CRYSTAL STRUCTURE OF THE TRANSCRIPTIONAL ACTIVATION DOMAIN OF THE
REMARK 900 PHAGE T4 TRANSCRIPTION FACTOR MOTA
DBREF 1I1S A 1 96 UNP P22915 MOTA_BPT4 1 96
SEQRES 1 A 96 MET SER LYS VAL THR TYR ILE ILE LYS ALA SER ASN ASP
SEQRES 2 A 96 VAL LEU ASN GLU LYS THR ALA THR ILE LEU ILE THR ILE
SEQRES 3 A 96 ALA LYS LYS ASP PHE ILE THR ALA ALA GLU VAL ARG GLU
SEQRES 4 A 96 VAL HIS PRO ASP LEU GLY ASN ALA VAL VAL ASN SER ASN
SEQRES 5 A 96 ILE GLY VAL LEU ILE LYS LYS GLY LEU VAL GLU LYS SER
SEQRES 6 A 96 GLY ASP GLY LEU ILE ILE THR GLY GLU ALA GLN ASP ILE
SEQRES 7 A 96 ILE SER ASN ALA ALA THR LEU TYR ALA GLN GLU ASN ALA
SEQRES 8 A 96 PRO GLU LEU LEU LYS
HELIX 1 1 LYS A 3 ASN A 12 1 10
HELIX 2 2 ASN A 16 LYS A 29 1 14
HELIX 3 3 THR A 33 HIS A 41 1 9
HELIX 4 4 GLY A 45 GLY A 60 1 16
HELIX 5 5 THR A 72 ASN A 90 1 19
SHEET 1 A 2 GLU A 63 SER A 65 0
SHEET 2 A 2 GLY A 68 ILE A 70 -1 O GLY A 68 N SER A 65
CISPEP 1 GLY A 45 ASN A 46 11 7.25
CISPEP 2 GLY A 45 ASN A 46 12 28.49
CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 1.000000 0.000000 0.000000 0.00000
SCALE2 0.000000 1.000000 0.000000 0.00000
SCALE3 0.000000 0.000000 1.000000 0.00000
MODEL 1
Complete list - b 23 2 Bytes