Header list of 1h5p.pdb file
Complete list - r 28 2 Bytes
HEADER NUCLEAR PROTEIN 24-MAY-01 1H5P
TITLE SOLUTION STRUCTURE OF THE HUMAN SP100B SAND DOMAIN BY HETERONUCLEAR
TITLE 2 NMR.
COMPND MOL_ID: 1;
COMPND 2 MOLECULE: NUCLEAR AUTOANTIGEN SP100-B;
COMPND 3 CHAIN: A;
COMPND 4 FRAGMENT: RESIDUES 595-688;
COMPND 5 SYNONYM: SAND DOMAIN, KDWK DOMAIN, SPECKLED 100 KDA, NUCLEAR DOT-
COMPND 6 ASSOCIATED SP100 PROTEIN, LYSP100B;
COMPND 7 ENGINEERED: YES
SOURCE MOL_ID: 1;
SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS;
SOURCE 3 ORGANISM_COMMON: HUMAN;
SOURCE 4 ORGANISM_TAXID: 9606;
SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3);
SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008;
SOURCE 7 EXPRESSION_SYSTEM_PLASMID: MODIFIED PET-24D;
SOURCE 8 EXPRESSION_SYSTEM_GENE: EXPRESSED AS FUSION PROTEIN WITH N-TERMINAL
SOURCE 9 6-HISTIDINE TAG AND A TEV PROTEASE CLEAVAGE SITE
KEYWDS TRANSCRIPTION, DNA BINDING, SP100B, SAND DOMAIN, KDWK, ANTIGEN,
KEYWDS 2 NUCLEAR PROTEIN, ALTERNATIVE SPLICING
EXPDTA SOLUTION NMR
NUMMDL 10
AUTHOR M.J.BOTTOMLEY,Z.LIU,M.W.COLLARD,J.I.HUGGENVIK,T.J.GIBSON,M.SATTLER
REVDAT 3 28-MAR-18 1H5P 1 SOURCE JRNL
REVDAT 2 24-FEB-09 1H5P 1 VERSN
REVDAT 1 06-JUL-01 1H5P 0
JRNL AUTH M.J.BOTTOMLEY,M.W.COLLARD,J.I.HUGGENVIK,Z.LIU,T.J.GIBSON,
JRNL AUTH 2 M.SATTLER
JRNL TITL THE SAND DOMAIN STRUCTURE DEFINES A NOVEL DNA-BINDING FOLD
JRNL TITL 2 IN TRANSCRIPTIONAL REGULATION.
JRNL REF NAT. STRUCT. BIOL. V. 8 626 2001
JRNL REFN ISSN 1072-8368
JRNL PMID 11427895
JRNL DOI 10.1038/89675
REMARK 1
REMARK 1 REFERENCE 1
REMARK 1 AUTH R.J.MICHELSON,M.W.COLLARD,A.J.ZIEMBA,J.PERSINGER,
REMARK 1 AUTH 2 B.BARTHOLOMEW,J.I.HUGGENVIK
REMARK 1 TITL NUCLEAR DEAF-1-RELATED (NUDR) PROTEIN CONTAINS A NOVEL DNA
REMARK 1 TITL 2 BINDING DOMAIN AND REPRESSES TRANSCRIPTION OF THE
REMARK 1 TITL 3 HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN A2/B1 PROMOTER
REMARK 1 REF J.BIOL.CHEM. V. 274 30510 1999
REMARK 1 REFN ISSN 0021-9258
REMARK 1 PMID 10521432
REMARK 1 DOI 10.1074/JBC.274.43.30510
REMARK 1 REFERENCE 2
REMARK 1 AUTH T.J.GIBSON,C.RAMU,C.GEMUEND,R.AASLAND
REMARK 1 TITL THE APECED POLYGLANDULAR AUTOIMMUNE SYNDROME PROTEIN,
REMARK 1 TITL 2 AIRE-1, CONTAINS THE SAND DOMAIN AND IS PROBABLY A
REMARK 1 TITL 3 TRANSCRIPTION FACTOR
REMARK 1 REF TRENDS BIOCHEM.SCI. V. 23 242 1998
REMARK 1 REFN ISSN 0968-0004
REMARK 1 PMID 9697411
REMARK 1 DOI 10.1016/S0968-0004(98)01231-6
REMARK 2
REMARK 2 RESOLUTION. NOT APPLICABLE.
REMARK 3
REMARK 3 REFINEMENT.
REMARK 3 PROGRAM : CNS 0.3
REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS, GROSSE-
REMARK 3 KUNSTLEVE,JIANG,KUSZEWSKI,NILGES, PANNU,READ, RICE,
REMARK 3 SIMONSON,WARREN
REMARK 3
REMARK 3 OTHER REFINEMENT REMARKS: DURING THE STRUCTURE CALCULATIONS, THE
REMARK 3 PROGRAM ARIA 1.0 (M.NILGES & S.I.O'DONOGHUE) WAS USED TO EMPLOY
REMARK 3 DISTANCE RESTRAINTS DERIVED FROM AMBIGUOUSLY ASSIGNED NOES. FROM
REMARK 3 A TOTAL OF 2120 NOES, ABOUT 80% WERE MANUALLY ASSIGNED, THE
REMARK 3 REMAINDER WAS ASSIGNED BY ARIA.
REMARK 4
REMARK 4 1H5P COMPLIES WITH FORMAT V. 3.15, 01-DEC-08
REMARK 100
REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 24-MAY-01.
REMARK 100 THE DEPOSITION ID IS D_1290006126.
REMARK 210
REMARK 210 EXPERIMENTAL DETAILS
REMARK 210 EXPERIMENT TYPE : NMR
REMARK 210 TEMPERATURE (KELVIN) : 295.0
REMARK 210 PH : 6.5
REMARK 210 IONIC STRENGTH : 20 MM SODIUM PHOSPHATE, 50 MM
REMARK 210 SODIUM CHLORIDE
REMARK 210 PRESSURE : 1 ATM
REMARK 210 SAMPLE CONTENTS : 1.2 MM PROTEIN, 20 MM SODIUM
REMARK 210 PHOSPHATE PH 6.5, 50 MM NACL, 4
REMARK 210 MM DTT
REMARK 210
REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D 13C-SEPARATED NOESY; 3D 15N
REMARK 210 -SEPARATED NOESY; HNHA
REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ; 750 MHZ
REMARK 210 SPECTROMETER MODEL : DRX
REMARK 210 SPECTROMETER MANUFACTURER : BRUKER
REMARK 210
REMARK 210 STRUCTURE DETERMINATION.
REMARK 210 SOFTWARE USED : NMRPIPE, XEASY, ARIA 1.0, CNS
REMARK 210 0.9
REMARK 210 METHOD USED : ARIA AMBIGUOUS DISTANCE
REMARK 210 RESTRAINTS SIMULATED ANNEALING
REMARK 210 WITH TORSION ANGLE DYNAMICS
REMARK 210
REMARK 210 CONFORMERS, NUMBER CALCULATED : 100
REMARK 210 CONFORMERS, NUMBER SUBMITTED : 10
REMARK 210 CONFORMERS, SELECTION CRITERIA : ACCEPTABLE COVALENT GEOMETRY,
REMARK 210 FAVOURABLE NON-BOND ENERGY,
REMARK 210 FEWEST RESTRAINT VIOLATIONS,
REMARK 210 LOWEST OVERALL ENERGIES
REMARK 210
REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1
REMARK 210
REMARK 210 REMARK: NULL
REMARK 215
REMARK 215 NMR STUDY
REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION
REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT
REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON
REMARK 215 THESE RECORDS ARE MEANINGLESS.
REMARK 300
REMARK 300 BIOMOLECULE: 1
REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM
REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN
REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON
REMARK 300 BURIED SURFACE AREA.
REMARK 350
REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN
REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE
REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS
REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND
REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN.
REMARK 350
REMARK 350 BIOMOLECULE: 1
REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC
REMARK 350 APPLY THE FOLLOWING TO CHAINS: A
REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000
REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000
REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000
REMARK 500
REMARK 500 GEOMETRY AND STEREOCHEMISTRY
REMARK 500 SUBTOPIC: TORSION ANGLES
REMARK 500
REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS:
REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER;
REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE).
REMARK 500
REMARK 500 STANDARD TABLE:
REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2)
REMARK 500
REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI-
REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400
REMARK 500
REMARK 500 M RES CSSEQI PSI PHI
REMARK 500 1 ASP A 595 179.31 59.70
REMARK 500 1 GLU A 596 -96.70 -129.36
REMARK 500 1 SER A 603 -16.52 69.62
REMARK 500 1 GLU A 611 -5.38 71.69
REMARK 500 1 THR A 625 7.48 -67.75
REMARK 500 1 ASP A 648 -75.95 -94.15
REMARK 500 1 ARG A 649 -39.99 178.96
REMARK 500 1 LYS A 653 -71.67 68.16
REMARK 500 1 ASN A 672 -75.19 -88.94
REMARK 500 1 LYS A 673 -18.26 -176.58
REMARK 500 1 PRO A 676 -92.73 -64.78
REMARK 500 1 GLU A 677 161.07 61.32
REMARK 500 1 PRO A 679 102.78 -39.35
REMARK 500 1 THR A 681 -87.38 -156.89
REMARK 500 1 ARG A 682 -147.05 -174.58
REMARK 500 1 ILE A 687 134.30 65.82
REMARK 500 2 GLU A 596 -102.88 -104.77
REMARK 500 2 SER A 603 -28.54 73.20
REMARK 500 2 GLU A 611 -2.36 69.56
REMARK 500 2 GLU A 633 -55.71 74.76
REMARK 500 2 ASP A 634 -24.94 177.77
REMARK 500 2 LYS A 635 19.68 -176.25
REMARK 500 2 PRO A 640 -17.82 -46.92
REMARK 500 2 ASP A 648 -77.73 -123.62
REMARK 500 2 ARG A 649 -31.04 178.32
REMARK 500 2 LYS A 653 -79.30 65.39
REMARK 500 2 LYS A 673 -25.59 -178.45
REMARK 500 2 LEU A 675 93.66 38.11
REMARK 500 2 SER A 680 87.23 58.60
REMARK 500 2 VAL A 685 -120.86 -78.36
REMARK 500 2 THR A 686 90.36 57.83
REMARK 500 3 ASN A 597 -36.89 -161.61
REMARK 500 3 ASN A 599 -162.29 -71.56
REMARK 500 3 PHE A 600 -1.30 -156.29
REMARK 500 3 GLN A 602 8.46 -66.85
REMARK 500 3 SER A 603 -31.71 73.82
REMARK 500 3 GLU A 611 -4.19 73.91
REMARK 500 3 LYS A 622 -16.26 -49.73
REMARK 500 3 GLU A 633 -55.78 73.78
REMARK 500 3 ASP A 634 -25.38 176.16
REMARK 500 3 LYS A 635 15.62 -175.89
REMARK 500 3 PRO A 640 -19.95 -48.30
REMARK 500 3 ASP A 648 -75.24 -99.71
REMARK 500 3 ARG A 649 -30.66 -175.35
REMARK 500 3 SER A 652 -147.20 -73.70
REMARK 500 3 LYS A 653 -50.67 -178.33
REMARK 500 3 ASN A 672 -76.09 -87.34
REMARK 500 3 LYS A 673 -16.76 171.43
REMARK 500 3 GLU A 677 74.68 -117.36
REMARK 500 3 SER A 680 -107.73 -68.11
REMARK 500
REMARK 500 THIS ENTRY HAS 171 RAMACHANDRAN OUTLIERS.
REMARK 500
REMARK 500 REMARK: NULL
REMARK 900
REMARK 900 RELATED ENTRIES
REMARK 900 RELATED ID: 5558 RELATED DB: BMRB
REMARK 999
REMARK 999 SEQUENCE
REMARK 999 THE STRUCTURE IS FOR THE SPLICE VARIANT SP100B SAND DOMAIN.
REMARK 999 THE RESIDUES 685 -688 (RILE IN ISOFORM SP100-A) ARE
REMARK 999 (VTIK IN ISOFORM SP100-B) DIFFERENT IN THE TWO SPLICE VARIANTS
REMARK 999 MET A 594 IS A CLONING ARTIFACT.
DBREF 1H5P A 594 594 PDB 1H5P 1H5P 594 594
DBREF 1H5P A 595 688 UNP P23497 SP10_HUMAN 595 688
SEQADV 1H5P VAL A 685 UNP P23497 ARG 685 VARIANT
SEQADV 1H5P THR A 686 UNP P23497 ILE 686 VARIANT
SEQADV 1H5P ILE A 687 UNP P23497 LEU 687 VARIANT
SEQADV 1H5P LYS A 688 UNP P23497 GLU 688 VARIANT
SEQRES 1 A 95 MET ASP GLU ASN ILE ASN PHE LYS GLN SER GLU LEU PRO
SEQRES 2 A 95 VAL THR CYS GLY GLU VAL LYS GLY THR LEU TYR LYS GLU
SEQRES 3 A 95 ARG PHE LYS GLN GLY THR SER LYS LYS CYS ILE GLN SER
SEQRES 4 A 95 GLU ASP LYS LYS TRP PHE THR PRO ARG GLU PHE GLU ILE
SEQRES 5 A 95 GLU GLY ASP ARG GLY ALA SER LYS ASN TRP LYS LEU SER
SEQRES 6 A 95 ILE ARG CYS GLY GLY TYR THR LEU LYS VAL LEU MET GLU
SEQRES 7 A 95 ASN LYS PHE LEU PRO GLU PRO PRO SER THR ARG LYS LYS
SEQRES 8 A 95 VAL THR ILE LYS
HELIX 1 1 GLU A 619 LYS A 622 1 4
HELIX 2 2 ARG A 641 GLY A 647 1 7
HELIX 3 3 TRP A 655 SER A 658 1 4
HELIX 4 4 THR A 665 ASN A 672 1 8
SHEET 1 AA 5 LYS A 636 PHE A 638 0
SHEET 2 AA 5 ILE A 630 SER A 632 -1 O ILE A 630 N PHE A 638
SHEET 3 AA 5 LYS A 613 TYR A 617 -1 O THR A 615 N GLN A 631
SHEET 4 AA 5 GLU A 604 THR A 608 -1 O LEU A 605 N LEU A 616
SHEET 5 AA 5 ILE A 659 CYS A 661 -1 O ARG A 660 N THR A 608
CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 1.000000 0.000000 0.000000 0.00000
SCALE2 0.000000 1.000000 0.000000 0.00000
SCALE3 0.000000 0.000000 1.000000 0.00000
MODEL 1
Complete list - r 28 2 Bytes