Header list of 1guw.pdb file
Complete list - n 17 2 Bytes
HEADER CHROMATIN-BINDING 01-FEB-02 1GUW
TITLE STRUCTURE OF THE CHROMODOMAIN FROM MOUSE HP1BETA IN COMPLEX WITH THE
TITLE 2 LYSINE 9-METHYL HISTONE H3 N-TERMINAL PEPTIDE, NMR, 25 STRUCTURES
COMPND MOL_ID: 1;
COMPND 2 MOLECULE: CHROMOBOX PROTEIN HOMOLOG 1;
COMPND 3 CHAIN: A;
COMPND 4 FRAGMENT: CHROMODOMAIN, RESIDUES 8 - 80;
COMPND 5 SYNONYM: HETEROCHROMATIN PROTEIN 1 HOMOLOG BETA, HP1 BETA, MODIFIER 1
COMPND 6 PROTEIN, M31;
COMPND 7 ENGINEERED: YES;
COMPND 8 MOL_ID: 2;
COMPND 9 MOLECULE: HISTONE H3.1;
COMPND 10 CHAIN: B;
COMPND 11 FRAGMENT: N-TERMINAL TAIL, RESIDUES 1-18;
COMPND 12 SYNONYM: HISTONE H3, NUCLEAR PROTEIN, CHROMOSOMAL PROTEIN, DNA-
COMPND 13 BINDING, NUCLEOSOME CORE, MULTIGENE FAMILY, METHYLATION;
COMPND 14 ENGINEERED: YES;
COMPND 15 OTHER_DETAILS: LYSINES 4 AND 9 HAVE BEEN MODIFIED TO N (EPSILON)-
COMPND 16 DIMETHYL-LYSINE
SOURCE MOL_ID: 1;
SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS;
SOURCE 3 ORGANISM_COMMON: MOUSE;
SOURCE 4 ORGANISM_TAXID: 10090;
SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI;
SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008;
SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3);
SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PET16B;
SOURCE 9 MOL_ID: 2;
SOURCE 10 SYNTHETIC: YES;
SOURCE 11 ORGANISM_SCIENTIFIC: MUS MUSCULUS;
SOURCE 12 ORGANISM_COMMON: MOUSE;
SOURCE 13 ORGANISM_TAXID: 10090;
SOURCE 14 OTHER_DETAILS: BOTH CHEMICALLY SYTHESIZED PEPTIDE AND PEPTIDE
SOURCE 15 OBTAINED FROM EXPRESSION IN BACTERIA WERE USED.
KEYWDS CHROMATIN-BINDING, LYSINE METHYLATION, HETEROCHROMATIN, HISTONE
KEYWDS 2 MODIFICATION
EXPDTA SOLUTION NMR
NUMMDL 25
AUTHOR P.R.NIELSEN,D.NIETLISPACH,H.R.MOTT,J.M.CALLAGHAN,A.BANNISTER,
AUTHOR 2 T.KOUZARIDES,A.G.MURZIN,N.V.MURZINA,E.D.LAUE
REVDAT 4 17-JAN-18 1GUW 1 JRNL
REVDAT 3 24-FEB-09 1GUW 1 VERSN
REVDAT 2 16-MAR-05 1GUW 1 JRNL
REVDAT 1 12-MAR-02 1GUW 0
JRNL AUTH P.R.NIELSEN,D.NIETLISPACH,H.R.MOTT,J.M.CALLAGHAN,
JRNL AUTH 2 A.BANNISTER,T.KOUZARIDES,A.G.MURZIN,N.V.MURZINA,E.D.LAUE
JRNL TITL STRUCTURE OF THE HP1 CHROMODOMAIN BOUND TO HISTONE H3
JRNL TITL 2 METHYLATED AT LYSINE 9
JRNL REF NATURE V. 416 103 2002
JRNL REFN ISSN 0028-0836
JRNL PMID 11882902
JRNL DOI 10.1038/NATURE722
REMARK 1
REMARK 1 REFERENCE 1
REMARK 1 AUTH L.J.BALL,N.V.MURZINA,R.W.BROADHURST,A.R.RAINE,S.J.ARCHER,
REMARK 1 AUTH 2 F.J.STOTT,A.G.MURZIN,P.B.SINGH,P.J.DOMAILLE,E.D.LAUE
REMARK 1 TITL STRUCTURE OF THE CHROMATIN BINDING (CHROMO) DOMAIN FROM
REMARK 1 TITL 2 MOUSE MODIFIER PROTEIN 1
REMARK 1 REF EMBO J. V. 16 2437 1997
REMARK 1 REFN ISSN 0261-4189
REMARK 1 PMID 9171360
REMARK 1 DOI 10.1093/EMBOJ/16.9.2473
REMARK 2
REMARK 2 RESOLUTION. NOT APPLICABLE.
REMARK 3
REMARK 3 REFINEMENT.
REMARK 3 PROGRAM : ARIA1.0
REMARK 3 AUTHORS : J.P.LINGE,S.I.O'DONOGHUE,M.NILGES
REMARK 3
REMARK 3 OTHER REFINEMENT REMARKS: NULL
REMARK 4
REMARK 4 1GUW COMPLIES WITH FORMAT V. 3.15, 01-DEC-08
REMARK 100
REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 01-FEB-02.
REMARK 100 THE DEPOSITION ID IS D_1290009379.
REMARK 210
REMARK 210 EXPERIMENTAL DETAILS
REMARK 210 EXPERIMENT TYPE : NMR
REMARK 210 TEMPERATURE (KELVIN) : 298
REMARK 210 PH : 5.5
REMARK 210 IONIC STRENGTH : NULL
REMARK 210 PRESSURE : 1 ATM
REMARK 210 SAMPLE CONTENTS : 150 MM NACL, 20 MM PHOSPHATE
REMARK 210 BUFFER, 10% D2O
REMARK 210
REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D; 3D 1H; 15N; 13C
REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ; 800 MHZ
REMARK 210 SPECTROMETER MODEL : DRX
REMARK 210 SPECTROMETER MANUFACTURER : BRUKER
REMARK 210
REMARK 210 STRUCTURE DETERMINATION.
REMARK 210 SOFTWARE USED : AZARA, ANZIG, ARIA1.0, CNS1.0
REMARK 210 METHOD USED : SIMULATED ANNEALING
REMARK 210
REMARK 210 CONFORMERS, NUMBER CALCULATED : 100
REMARK 210 CONFORMERS, NUMBER SUBMITTED : 25
REMARK 210 CONFORMERS, SELECTION CRITERIA : LOWEST ENERGY OF 75 CONVERGED
REMARK 210 STRUCTURES
REMARK 210
REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1
REMARK 210
REMARK 210 REMARK: THE STRUCTURE WAS DETERMINED USING TRIPLE-RESONANCE 2D AND
REMARK 210 3D NMR SPECTROSCOPY ON 13C, 15N-LABELED PROTEIN. FOR PROTEIN
REMARK 210 ASSIGMENTS THE SAMPLE CONTAINED AN EXCESS OF 1.2 FOLD OF
REMARK 210 UNLABELLED PEPTIDE. THE PEPTIDE WAS ASSIGNED USING 13C, 15N
REMARK 210 REJECTED NOESY AND TOCSY EXPERIMENTS ON A SAMPLE OF EXCESS 13C,
REMARK 210 15N LABELLED PROTEIN TO UNLABELLED PEPTIDE. THE METHYL GROUP
REMARK 210 RESONANCES OF LYSINE 4 AND 9 OF THE PEPTIDE WERE CONFIRMED WITH
REMARK 210 THE HELP OF A 13C METHYL-SELECTIVELY LABELLED SAMPLE MIXED WITH
REMARK 210 UNLABELLED PROTEIN. INTERMOLECULAR CONTACTS WERE OBTAINED FROM A
REMARK 210 13C/15N X-FILTERED NOESY SPECTRUM AND A 3D J(CH,NH)- SEPARATED
REMARK 210 NOESY SPECTRUM
REMARK 215
REMARK 215 NMR STUDY
REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION
REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT
REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON
REMARK 215 THESE RECORDS ARE MEANINGLESS.
REMARK 300
REMARK 300 BIOMOLECULE: 1
REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM
REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN
REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON
REMARK 300 BURIED SURFACE AREA.
REMARK 350
REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN
REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE
REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS
REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND
REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN.
REMARK 350
REMARK 350 BIOMOLECULE: 1
REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC
REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B
REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000
REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000
REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000
REMARK 500
REMARK 500 GEOMETRY AND STEREOCHEMISTRY
REMARK 500 SUBTOPIC: CLOSE CONTACTS
REMARK 500
REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT.
REMARK 500
REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE
REMARK 500
REMARK 500 REMARK: NULL
REMARK 500
REMARK 500 GEOMETRY AND STEREOCHEMISTRY
REMARK 500 SUBTOPIC: TORSION ANGLES
REMARK 500
REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS:
REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER;
REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE).
REMARK 500
REMARK 500 STANDARD TABLE:
REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2)
REMARK 500
REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI-
REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400
REMARK 500
REMARK 500 M RES CSSEQI PSI PHI
REMARK 500 1 VAL A 10 -147.27 -145.14
REMARK 500 1 LEU A 14 46.69 -176.07
REMARK 500 1 GLU A 15 140.64 -176.58
REMARK 500 1 GLU A 16 135.59 66.44
REMARK 500 1 GLU A 17 42.17 -170.15
REMARK 500 1 LYS A 25 142.64 177.87
REMARK 500 1 ASP A 28 -146.25 -153.67
REMARK 500 1 LYS A 33 -37.15 76.05
REMARK 500 1 LYS A 35 -157.58 -79.74
REMARK 500 1 ASP A 49 41.66 -76.42
REMARK 500 1 ASP A 59 50.00 -110.90
REMARK 500 1 CYS A 60 62.32 -152.40
REMARK 500 1 LYS A 72 -143.28 -65.95
REMARK 500 1 ALA A 74 -26.02 176.87
REMARK 500 1 GLU A 76 -29.93 70.52
REMARK 500 1 ASP A 78 -133.18 -154.01
REMARK 500 1 LYS A 79 -140.97 -68.57
REMARK 500 2 MET A 9 -133.82 56.22
REMARK 500 2 VAL A 10 -40.62 -167.59
REMARK 500 2 GLU A 11 134.10 64.45
REMARK 500 2 GLU A 12 37.56 -174.31
REMARK 500 2 GLU A 15 146.92 65.36
REMARK 500 2 GLU A 16 -39.20 -148.61
REMARK 500 2 LYS A 25 146.04 -172.62
REMARK 500 2 ASP A 28 -149.35 179.95
REMARK 500 2 ASP A 59 44.65 -107.54
REMARK 500 2 GLN A 71 29.05 -76.25
REMARK 500 2 HIS A 75 -37.74 72.49
REMARK 500 2 THR A 77 43.23 -145.52
REMARK 500 2 LYS A 79 47.36 -172.17
REMARK 500 2 SER B 10 136.23 -179.96
REMARK 500 2 LYS B 14 47.22 -164.53
REMARK 500 3 GLU A 11 120.51 -170.58
REMARK 500 3 GLU A 12 -37.83 179.85
REMARK 500 3 VAL A 13 126.30 68.75
REMARK 500 3 LEU A 14 52.24 -175.13
REMARK 500 3 GLU A 16 -146.53 54.39
REMARK 500 3 GLU A 17 -144.12 -86.84
REMARK 500 3 LYS A 25 138.38 -175.47
REMARK 500 3 ASP A 28 -157.89 -175.76
REMARK 500 3 LYS A 33 -15.52 -170.62
REMARK 500 3 LYS A 35 -159.96 -88.49
REMARK 500 3 LYS A 72 125.75 -179.47
REMARK 500 3 ALA A 74 -43.57 178.35
REMARK 500 3 HIS A 75 -129.03 57.45
REMARK 500 3 GLU A 76 -44.96 -164.39
REMARK 500 3 ASP A 78 -133.38 55.55
REMARK 500 3 LYS A 79 -47.71 -174.80
REMARK 500 3 MLY B 4 -130.05 -85.70
REMARK 500 3 MLY B 9 44.73 -82.82
REMARK 500
REMARK 500 THIS ENTRY HAS 532 RAMACHANDRAN OUTLIERS.
REMARK 500
REMARK 500 REMARK: NULL
REMARK 900
REMARK 900 RELATED ENTRIES
REMARK 900 RELATED ID: 1AP0 RELATED DB: PDB
REMARK 900 STRUCTURE OF THE CHROMATIN BINDING (CHROMO) DOMAIN FROM MOUSE
REMARK 900 MODIFIER PROTEIN 1, NMR, 26 STRUCTURES
REMARK 900 RELATED ID: 1DZ1 RELATED DB: PDB
REMARK 900 MOUSE HP1 (M31) C TERMINAL (SHADOW CHROMO) DOMAIN
DBREF 1GUW A 8 9 PDB 1GUW 1GUW 8 9
DBREF 1GUW A 10 80 UNP P23197 CBX1_HUMAN 10 80
DBREF 1GUW B 1 16 UNP P16106 H31_HUMAN 1 16
DBREF 1GUW B 17 18 PDB 1GUW 1GUW 17 18
SEQRES 1 A 73 HIS MET VAL GLU GLU VAL LEU GLU GLU GLU GLU GLU GLU
SEQRES 2 A 73 TYR VAL VAL GLU LYS VAL LEU ASP ARG ARG VAL VAL LYS
SEQRES 3 A 73 GLY LYS VAL GLU TYR LEU LEU LYS TRP LYS GLY PHE SER
SEQRES 4 A 73 ASP GLU ASP ASN THR TRP GLU PRO GLU GLU ASN LEU ASP
SEQRES 5 A 73 CYS PRO ASP LEU ILE ALA GLU PHE LEU GLN SER GLN LYS
SEQRES 6 A 73 THR ALA HIS GLU THR ASP LYS SER
SEQRES 1 B 18 ALA ARG THR MLY GLN THR ALA ARG MLY SER THR GLY GLY
SEQRES 2 B 18 LYS ALA PRO GLY GLY
MODRES 1GUW MLY B 4 LYS N-DIMETHYL-LYSINE
MODRES 1GUW MLY B 9 LYS N-DIMETHYL-LYSINE
HET MLY B 4 28
HET MLY B 9 28
HETNAM MLY N-DIMETHYL-LYSINE
FORMUL 2 MLY 2(C8 H18 N2 O2)
HELIX 1 1 CYS A 60 LYS A 72 1 13
SHEET 1 AA 2 VAL A 23 VAL A 26 0
SHEET 2 AA 2 LEU A 40 TRP A 42 -1 O LYS A 41 N GLU A 24
SHEET 1 AB 2 GLU A 37 TYR A 38 0
SHEET 2 AB 2 GLU A 53 PRO A 54 -1 O GLU A 53 N TYR A 38
SHEET 1 AC 2 LEU A 58 ASP A 59 0
SHEET 2 AC 2 THR B 6 ALA B 7 -1 O THR B 6 N ASP A 59
LINK C THR B 3 N MLY B 4 1555 1555 1.33
LINK C MLY B 4 N GLN B 5 1555 1555 1.33
LINK C ARG B 8 N MLY B 9 1555 1555 1.33
LINK C MLY B 9 N SER B 10 1555 1555 1.33
CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 1.000000 0.000000 0.000000 0.00000
SCALE2 0.000000 1.000000 0.000000 0.00000
SCALE3 0.000000 0.000000 1.000000 0.00000
MODEL 1
Complete list - n 17 2 Bytes