Header list of 1g3f.pdb file
Complete list - 23 20 Bytes
HEADER APOPTOSIS 24-OCT-00 1G3F
TITLE NMR STRUCTURE OF A 9 RESIDUE PEPTIDE FROM SMAC/DIABLO COMPLEXED TO THE
TITLE 2 BIR3 DOMAIN OF XIAP
COMPND MOL_ID: 1;
COMPND 2 MOLECULE: INHIBITOR OF APOPTOSIS PROTEIN 3;
COMPND 3 CHAIN: A;
COMPND 4 FRAGMENT: RESIDUES 241-356;
COMPND 5 SYNONYM: X-LINKED INHIBITOR OF APOPTOSIS PROTEIN, XIAP;
COMPND 6 ENGINEERED: YES;
COMPND 7 MOL_ID: 2;
COMPND 8 MOLECULE: SMAC;
COMPND 9 CHAIN: B;
COMPND 10 FRAGMENT: 9 RESIDUE PEPTIDE;
COMPND 11 ENGINEERED: YES
SOURCE MOL_ID: 1;
SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS;
SOURCE 3 ORGANISM_COMMON: HUMAN;
SOURCE 4 ORGANISM_TAXID: 9606;
SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI;
SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562;
SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID;
SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PET28B;
SOURCE 9 MOL_ID: 2;
SOURCE 10 SYNTHETIC: YES;
SOURCE 11 OTHER_DETAILS: THE 9 RESIDUE PEPTIDE WAS CHEMICALLY SYNTHESIZED.
KEYWDS ZINC FINGER, COMPLEX, PEPTIDE-PROTEIN, APOPTOSIS, BIR
EXPDTA SOLUTION NMR
MDLTYP MINIMIZED AVERAGE
AUTHOR Z.LIU,C.SUN,E.T.OLEJNICZAK,R.P.MEADOWS,S.F.BETZ,T.OOST,J.HERRMANN,
AUTHOR 2 J.C.WU,S.W.FESIK
REVDAT 4 23-FEB-22 1G3F 1 REMARK SEQADV LINK
REVDAT 3 24-FEB-09 1G3F 1 VERSN
REVDAT 2 30-SEP-03 1G3F 1 DBREF
REVDAT 1 10-JAN-01 1G3F 0
JRNL AUTH Z.LIU,C.SUN,E.T.OLEJNICZAK,R.P.MEADOWS,S.F.BETZ,T.OOST,
JRNL AUTH 2 J.HERRMANN,J.C.WU,S.W.FESIK
JRNL TITL STRUCTURAL BASIS FOR BINDING OF SMAC/DIABLO TO THE XIAP BIR3
JRNL TITL 2 DOMAIN.
JRNL REF NATURE V. 408 1004 2000
JRNL REFN ISSN 0028-0836
JRNL PMID 11140637
JRNL DOI 10.1038/35050006
REMARK 2
REMARK 2 RESOLUTION. NOT APPLICABLE.
REMARK 3
REMARK 3 REFINEMENT.
REMARK 3 PROGRAM : CNX 2000
REMARK 3 AUTHORS : BRUNGER
REMARK 3
REMARK 3 OTHER REFINEMENT REMARKS: NULL
REMARK 4
REMARK 4 1G3F COMPLIES WITH FORMAT V. 3.30, 13-JUL-11
REMARK 100
REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 31-OCT-00.
REMARK 100 THE DEPOSITION ID IS D_1000012184.
REMARK 210
REMARK 210 EXPERIMENTAL DETAILS
REMARK 210 EXPERIMENT TYPE : NMR
REMARK 210 TEMPERATURE (KELVIN) : 300
REMARK 210 PH : 7.2
REMARK 210 IONIC STRENGTH : NULL
REMARK 210 PRESSURE : 1 ATM
REMARK 210 SAMPLE CONTENTS : 1 MM PROTEIN/PEPTIDE COMPLEX,
REMARK 210 120 MM NACL, 1MM DTT, 10MM
REMARK 210 PHOSPHATE
REMARK 210
REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D_15N-SEPARATED_NOESY
REMARK 210 SPECTROMETER FIELD STRENGTH : 800 MHZ
REMARK 210 SPECTROMETER MODEL : DRX
REMARK 210 SPECTROMETER MANUFACTURER : BRUKER
REMARK 210
REMARK 210 STRUCTURE DETERMINATION.
REMARK 210 SOFTWARE USED : NULL
REMARK 210 METHOD USED : SIMULATED ANNEALING
REMARK 210
REMARK 210 CONFORMERS, NUMBER CALCULATED : NULL
REMARK 210 CONFORMERS, NUMBER SUBMITTED : 1
REMARK 210 CONFORMERS, SELECTION CRITERIA : NULL
REMARK 210
REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : NULL
REMARK 210
REMARK 210 REMARK: NULL
REMARK 215
REMARK 215 NMR STUDY
REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION
REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT
REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON
REMARK 215 THESE RECORDS ARE MEANINGLESS.
REMARK 300
REMARK 300 BIOMOLECULE: 1
REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM
REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN
REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON
REMARK 300 BURIED SURFACE AREA.
REMARK 350
REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN
REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE
REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS
REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND
REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN.
REMARK 350
REMARK 350 BIOMOLECULE: 1
REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC
REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B
REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000
REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000
REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000
REMARK 500
REMARK 500 GEOMETRY AND STEREOCHEMISTRY
REMARK 500 SUBTOPIC: TORSION ANGLES
REMARK 500
REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS:
REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER;
REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE).
REMARK 500
REMARK 500 STANDARD TABLE:
REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2)
REMARK 500
REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI-
REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400
REMARK 500
REMARK 500 M RES CSSEQI PSI PHI
REMARK 500 SER A 241 99.10 -69.59
REMARK 500 ASP A 242 -64.87 -108.37
REMARK 500 ALA A 243 176.01 72.46
REMARK 500 SER A 246 57.51 -169.02
REMARK 500 ASP A 247 -74.85 -174.86
REMARK 500 ASN A 249 -161.57 -65.40
REMARK 500 PHE A 250 103.29 -38.60
REMARK 500 PRO A 251 -70.53 -54.73
REMARK 500 ASN A 252 -73.70 -47.94
REMARK 500 SER A 253 -30.29 165.70
REMARK 500 THR A 254 -36.24 -175.53
REMARK 500 ASN A 255 150.20 -39.88
REMARK 500 ARG A 258 -176.98 49.52
REMARK 500 ASN A 259 123.74 170.26
REMARK 500 SER A 261 -35.79 -35.89
REMARK 500 ALA A 263 53.90 -104.68
REMARK 500 ASP A 264 -98.85 -96.47
REMARK 500 TYR A 265 -71.19 -48.35
REMARK 500 ALA A 267 -71.40 -44.77
REMARK 500 TRP A 275 154.51 -41.02
REMARK 500 ILE A 276 127.52 -178.69
REMARK 500 LEU A 292 40.46 -104.67
REMARK 500 ASP A 296 -72.45 86.60
REMARK 500 HIS A 302 -62.31 70.28
REMARK 500 ASP A 309 57.36 70.51
REMARK 500 TRP A 310 -178.20 -52.76
REMARK 500 GLN A 319 -71.68 -67.11
REMARK 500 PRO A 325 64.80 -68.23
REMARK 500 LEU A 344 -40.64 168.46
REMARK 500 LEU A 348 -176.46 61.19
REMARK 500 GLU A 349 99.28 66.06
REMARK 500 GLU A 350 -141.90 -119.55
REMARK 500 CYS A 351 -3.14 84.11
REMARK 500 VAL A 353 -66.73 69.65
REMARK 500 ILE B 904 -80.38 -47.80
REMARK 500 ALA B 905 -82.89 60.08
REMARK 500 GLN B 906 -82.61 62.23
REMARK 500 LYS B 907 -90.66 40.59
REMARK 500
REMARK 500 REMARK: NULL
REMARK 620
REMARK 620 METAL COORDINATION
REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER;
REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE):
REMARK 620
REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL
REMARK 620 ZN A 999 ZN
REMARK 620 N RES CSSEQI ATOM
REMARK 620 1 CYS A 300 SG
REMARK 620 2 CYS A 303 SG 107.5
REMARK 620 3 HIS A 320 ND1 107.2 113.1
REMARK 620 4 CYS A 327 SG 108.5 108.6 111.7
REMARK 620 N 1 2 3
REMARK 800
REMARK 800 SITE
REMARK 800 SITE_IDENTIFIER: AC1
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 999
DBREF 1G3F A 241 356 UNP P98170 BIRC4_HUMAN 241 356
DBREF 1G3F B 901 909 UNP Q9NR28 DBLOH_HUMAN 56 64
SEQADV 1G3F MET A 240 UNP P98170 CLONING ARTIFACT
SEQRES 1 A 117 MET SER ASP ALA VAL SER SER ASP ARG ASN PHE PRO ASN
SEQRES 2 A 117 SER THR ASN LEU PRO ARG ASN PRO SER MET ALA ASP TYR
SEQRES 3 A 117 GLU ALA ARG ILE PHE THR PHE GLY THR TRP ILE TYR SER
SEQRES 4 A 117 VAL ASN LYS GLU GLN LEU ALA ARG ALA GLY PHE TYR ALA
SEQRES 5 A 117 LEU GLY GLU GLY ASP LYS VAL LYS CYS PHE HIS CYS GLY
SEQRES 6 A 117 GLY GLY LEU THR ASP TRP LYS PRO SER GLU ASP PRO TRP
SEQRES 7 A 117 GLU GLN HIS ALA LYS TRP TYR PRO GLY CYS LYS TYR LEU
SEQRES 8 A 117 LEU GLU GLN LYS GLY GLN GLU TYR ILE ASN ASN ILE HIS
SEQRES 9 A 117 LEU THR HIS SER LEU GLU GLU CYS LEU VAL ARG THR THR
SEQRES 1 B 9 ALA VAL PRO ILE ALA GLN LYS SER GLU
HET ZN A 999 1
HETNAM ZN ZINC ION
FORMUL 3 ZN ZN 2+
HELIX 1 1 ALA A 243 ASP A 247 5 5
HELIX 2 2 ASP A 264 GLY A 273 1 10
HELIX 3 3 ASN A 280 GLY A 288 1 9
HELIX 4 4 ASP A 315 TYR A 324 1 10
HELIX 5 5 CYS A 327 GLY A 335 1 9
HELIX 6 6 LYS A 334 HIS A 343 1 10
SHEET 1 A 4 PHE A 289 ALA A 291 0
SHEET 2 A 4 VAL A 298 CYS A 300 -1 O LYS A 299 N TYR A 290
SHEET 3 A 4 GLY A 306 THR A 308 -1 N LEU A 307 O VAL A 298
SHEET 4 A 4 VAL B 902 PRO B 903 -1 N VAL B 902 O THR A 308
LINK SG CYS A 300 ZN ZN A 999 1555 1555 2.10
LINK SG CYS A 303 ZN ZN A 999 1555 1555 2.11
LINK ND1 HIS A 320 ZN ZN A 999 1555 1555 2.22
LINK SG CYS A 327 ZN ZN A 999 1555 1555 2.11
SITE 1 AC1 4 CYS A 300 CYS A 303 HIS A 320 CYS A 327
CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 1.000000 0.000000 0.000000 0.00000
SCALE2 0.000000 1.000000 0.000000 0.00000
SCALE3 0.000000 0.000000 1.000000 0.00000
Complete list - 23 20 Bytes