Header list of 1fyp.pdb file
Complete list - b 23 2 Bytes
HEADER RNA 02-OCT-00 1FYP
TITLE EUKARYOTIC DECODING REGION A-SITE RNA-PAROMOMYCIN COMPLEX
COMPND MOL_ID: 1;
COMPND 2 MOLECULE: FRAGMENT OF 18S RIBOSOMAL RNA;
COMPND 3 CHAIN: A;
COMPND 4 FRAGMENT: 18S RNA - NUCLEOTIDES 1404-1412, 1488-1497 (E. COLI
COMPND 5 NUMBERING);
COMPND 6 ENGINEERED: YES;
COMPND 7 MUTATION: YES;
COMPND 8 OTHER_DETAILS: EUKARYOTIC DECODING REGION A-SITE RNA
SOURCE MOL_ID: 1;
SOURCE 2 SYNTHETIC: YES;
SOURCE 3 OTHER_DETAILS: THIS SEQUENCE OF 18S RNA OCCURS IN TETRAHYMENA
SOURCE 4 THERMOPHILA
KEYWDS RNA-PAROMOMYCIN COMPLEX, AMINOGLYCOSIDE, STEM-INTERNAL LOOP-STEM-
KEYWDS 2 TETRALOOP, RNA-DRUG, G-A BASE PAIR, RNA
EXPDTA SOLUTION NMR
NUMMDL 29
AUTHOR S.R.LYNCH,J.D.PUGLISI
REVDAT 4 23-FEB-22 1FYP 1 REMARK HETSYN
REVDAT 3 24-FEB-09 1FYP 1 VERSN
REVDAT 2 09-JAN-02 1FYP 1 COMPND SOURCE REMARK
REVDAT 1 14-MAR-01 1FYP 0
JRNL AUTH S.R.LYNCH,J.D.PUGLISI
JRNL TITL STRUCTURAL ORIGINS OF AMINOGLYCOSIDE SPECIFICITY FOR
JRNL TITL 2 PROKARYOTIC RIBOSOMES.
JRNL REF J.MOL.BIOL. V. 306 1037 2001
JRNL REFN ISSN 0022-2836
JRNL PMID 11237617
JRNL DOI 10.1006/JMBI.2000.4420
REMARK 2
REMARK 2 RESOLUTION. NOT APPLICABLE.
REMARK 3
REMARK 3 REFINEMENT.
REMARK 3 PROGRAM : VNMR 6.1, X-PLOR 3.83
REMARK 3 AUTHORS : BRUNGER (X-PLOR)
REMARK 3
REMARK 3 OTHER REFINEMENT REMARKS: 605 NOES, 122 DIHEDRAL CONSTRAINTS, AND
REMARK 3 36 HYDROGEN BONDS
REMARK 4
REMARK 4 1FYP COMPLIES WITH FORMAT V. 3.15, 01-DEC-08
REMARK 100
REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 10-OCT-00.
REMARK 100 THE DEPOSITION ID IS D_1000012022.
REMARK 210
REMARK 210 EXPERIMENTAL DETAILS
REMARK 210 EXPERIMENT TYPE : NMR
REMARK 210 TEMPERATURE (KELVIN) : 308
REMARK 210 PH : 6.3
REMARK 210 IONIC STRENGTH : 10 MM
REMARK 210 PRESSURE : 1 ATM
REMARK 210 SAMPLE CONTENTS : 3 MM RNA, 3 MM PAROMOMYCIN, 10
REMARK 210 MM NAPHOSPHATE, PH 6.3, 13C/15N
REMARK 210 RNA
REMARK 210
REMARK 210 NMR EXPERIMENTS CONDUCTED : DQF-COSY; 3D_15N
REMARK 210 -SEPARATED_NOESY; 3D_13C-
REMARK 210 SEPARATED_NOESY; 2D NOESY
REMARK 210 SPECTROMETER FIELD STRENGTH : 500 MHZ; 800 MHZ
REMARK 210 SPECTROMETER MODEL : INOVA
REMARK 210 SPECTROMETER MANUFACTURER : VARIAN
REMARK 210
REMARK 210 STRUCTURE DETERMINATION.
REMARK 210 SOFTWARE USED : VNMR 6.1, FELIX 98, X-PLOR 3.83
REMARK 210 METHOD USED : SIMULATED ANNEALING MOLECULAR
REMARK 210 DYNAMICS
REMARK 210
REMARK 210 CONFORMERS, NUMBER CALCULATED : 100
REMARK 210 CONFORMERS, NUMBER SUBMITTED : 29
REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LEAST
REMARK 210 RESTRAINT VIOLATIONS,STRUCTURES
REMARK 210 WITH THE LOWEST ENERGY
REMARK 210
REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 11
REMARK 210
REMARK 210 REMARK: NULL
REMARK 215
REMARK 215 NMR STUDY
REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION
REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT
REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON
REMARK 215 THESE RECORDS ARE MEANINGLESS.
REMARK 300
REMARK 300 BIOMOLECULE: 1
REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM
REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN
REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON
REMARK 300 BURIED SURFACE AREA.
REMARK 350
REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN
REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE
REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS
REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND
REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN.
REMARK 350
REMARK 350 BIOMOLECULE: 1
REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC
REMARK 350 APPLY THE FOLLOWING TO CHAINS: A
REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000
REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000
REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000
REMARK 500
REMARK 500 GEOMETRY AND STEREOCHEMISTRY
REMARK 500 SUBTOPIC: CLOSE CONTACTS
REMARK 500
REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT.
REMARK 500
REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE
REMARK 500
REMARK 500 REMARK: NULL
REMARK 800
REMARK 800 SITE
REMARK 800 SITE_IDENTIFIER: AC1
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PAR A 28
REMARK 900
REMARK 900 RELATED ENTRIES
REMARK 900 RELATED ID: 1FYO RELATED DB: PDB
REMARK 900 EUKARYOTIC DECODING REGION A-SITE RNA, FREE IN SOLUTION
REMARK 900 RELATED ID: 1PBR RELATED DB: PDB
REMARK 900 PROKARYOTIC DECODING REGION A-SITE RNA, BOUND TO PAROMOMYCIN
REMARK 900 RELATED ID: 1A3M RELATED DB: PDB
REMARK 900 PROKARYOTIC DECODING REGION A-SITE RNA, FREE IN SOLUTION
DBREF 1FYP A 1 27 PDB 1FYP 1FYP 1 27
SEQRES 1 A 27 G G C G U C G C A C C U U
SEQRES 2 A 27 C G G G U G A A G U C G C
SEQRES 3 A 27 C
HET PAR A 28 87
HETNAM PAR PAROMOMYCIN
HETSYN PAR PAROMOMYCIN I; AMMINOSIDIN; CATENULIN; CRESTOMYCIN;
HETSYN 2 PAR MONOMYCIN A; NEOMYCIN E
FORMUL 2 PAR C23 H45 N5 O14
SITE 1 AC1 13 G A 2 C A 3 G A 4 U A 5
SITE 2 AC1 13 C A 6 G A 7 G A 17 U A 18
SITE 3 AC1 13 G A 19 A A 20 A A 21 G A 22
SITE 4 AC1 13 U A 23
CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 1.000000 0.000000 0.000000 0.00000
SCALE2 0.000000 1.000000 0.000000 0.00000
SCALE3 0.000000 0.000000 1.000000 0.00000
MODEL 1
Complete list - b 23 2 Bytes