Header list of 1f5u.pdb file
Complete list - 16 20 Bytes
HEADER RNA 16-JUN-00 1F5U
TITLE SOLUTION STRUCTURE OF THE KISSING DIMER OF H3 GACG STEM-LOOP IN THE
TITLE 2 5'-END DIMERIZATION SIGNAL OF MOLONEY MURINE LEUKEMIA VIRUS GENOMIC
TITLE 3 RNA
COMPND MOL_ID: 1;
COMPND 2 MOLECULE: RNA (5'-
COMPND 3 R(*GP*GP*UP*GP*GP*GP*AP*GP*AP*CP*GP*UP*CP*CP*CP*AP*CP*C)-3');
COMPND 4 CHAIN: A, B;
COMPND 5 FRAGMENT: 18 MER RNA SEQUENCE MIMICKING H3 GACG STEM-LOOP;
COMPND 6 ENGINEERED: YES;
COMPND 7 OTHER_DETAILS: H3 GACG STEM-LOOP IN THE 5'-END DIMERIZATION SIGNAL
COMPND 8 SEQUENCE OF MOLONEY MURINE LEUKEMIA VIRUS GENOMIC RNA
SOURCE MOL_ID: 1;
SOURCE 2 SYNTHETIC: YES;
SOURCE 3 OTHER_DETAILS: THIS SEQUENCE OCCURS NATURALLY IN MOLONEY MURINE
SOURCE 4 LEUKEMIA VIRUS
KEYWDS RETROVIRUS, MOLONEY MURINE LEUKEMIA VIRUS, DIMERIZATION, TETRALOOP,
KEYWDS 2 STEM-LOOP, KISSING DIMER, RNA
EXPDTA SOLUTION NMR
AUTHOR C.-H.KIM,I.TINOCO JR.
REVDAT 5 16-FEB-22 1F5U 1 REMARK
REVDAT 4 24-FEB-09 1F5U 1 VERSN
REVDAT 3 01-APR-03 1F5U 1 JRNL
REVDAT 2 04-SEP-00 1F5U 1 REMARK
REVDAT 1 21-AUG-00 1F5U 0
JRNL AUTH C.H.KIM,I.TINOCO JR.
JRNL TITL A RETROVIRAL RNA KISSING COMPLEX CONTAINING ONLY TWO G.C
JRNL TITL 2 BASE PAIRS.
JRNL REF PROC.NATL.ACAD.SCI.USA V. 97 9396 2000
JRNL REFN ISSN 0027-8424
JRNL PMID 10931958
JRNL DOI 10.1073/PNAS.170283697
REMARK 2
REMARK 2 RESOLUTION. NOT APPLICABLE.
REMARK 3
REMARK 3 REFINEMENT.
REMARK 3 PROGRAM : UXNMR 910901, X-PLOR 3.1
REMARK 3 AUTHORS : BRUKER (UXNMR), AXEL BRUNGER (X-PLOR)
REMARK 3
REMARK 3 OTHER REFINEMENT REMARKS: THE STRUCTURE IS BASED ON A TOTAL OF
REMARK 3 852 RESTRAINTS, 528 NOE-DERIVED DISTANCE CONSTRAINTS, 324
REMARK 3 DIHEDRAL CONSTRAINTS
REMARK 4
REMARK 4 1F5U COMPLIES WITH FORMAT V. 3.30, 13-JUL-11
REMARK 100
REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 19-JUN-00.
REMARK 100 THE DEPOSITION ID IS D_1000011279.
REMARK 210
REMARK 210 EXPERIMENTAL DETAILS
REMARK 210 EXPERIMENT TYPE : NMR
REMARK 210 TEMPERATURE (KELVIN) : 293; 283
REMARK 210 PH : 6.5; 6.5
REMARK 210 IONIC STRENGTH : 100 MM NACL; 100MM NACL
REMARK 210 PRESSURE : AMBIENT; AMBIENT
REMARK 210 SAMPLE CONTENTS : 2 MM RNA SAMPLE, 10MM SODIUM
REMARK 210 PHOSPHATE BUFFER PH 6.5, 100MM
REMARK 210 SODIUM CHLORIDE, 0.1 MM EDTA; 2
REMARK 210 MM RNA SAMPLE, 10MM SODIUM
REMARK 210 PHOSPHATE BUFFER PH 6.5, 100MM
REMARK 210 SODIUM CHLORIDE, 0.1 MM EDTA
REMARK 210
REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D NOESY; DQF-COSY
REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ; 500 MHZ
REMARK 210 SPECTROMETER MODEL : AMX; DRX
REMARK 210 SPECTROMETER MANUFACTURER : BRUKER
REMARK 210
REMARK 210 STRUCTURE DETERMINATION.
REMARK 210 SOFTWARE USED : XWINNMR, FELIX 95.0, X-PLOR 3.1
REMARK 210 METHOD USED : SIMULATED ANNEALING
REMARK 210
REMARK 210 CONFORMERS, NUMBER CALCULATED : 19
REMARK 210 CONFORMERS, NUMBER SUBMITTED : 1
REMARK 210 CONFORMERS, SELECTION CRITERIA : AVERAGED AND ENERGY-MINIMIZED
REMARK 210 STRUCTURE BASED ON 19 CONVERGED
REMARK 210 STRUCTURES
REMARK 210
REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1
REMARK 210
REMARK 210 REMARK: NULL
REMARK 215
REMARK 215 NMR STUDY
REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION
REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT
REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON
REMARK 215 THESE RECORDS ARE MEANINGLESS.
REMARK 300
REMARK 300 BIOMOLECULE: 1
REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM
REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN
REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON
REMARK 300 BURIED SURFACE AREA.
REMARK 350
REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN
REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE
REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS
REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND
REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN.
REMARK 350
REMARK 350 BIOMOLECULE: 1
REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC
REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B
REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000
REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000
REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000
DBREF 1F5U A 1 18 PDB 1F5U 1F5U 1 18
DBREF 1F5U B 1 18 PDB 1F5U 1F5U 1 18
SEQRES 1 A 18 G G U G G G A G A C G U C
SEQRES 2 A 18 C C A C C
SEQRES 1 B 18 G G U G G G A G A C G U C
SEQRES 2 B 18 C C A C C
CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 1.000000 0.000000 0.000000 0.00000
SCALE2 0.000000 1.000000 0.000000 0.00000
SCALE3 0.000000 0.000000 1.000000 0.00000
Complete list - 16 20 Bytes