Header list of 1ef4.pdb file
Complete list - b 16 2 Bytes
HEADER TRANSFERASE 07-FEB-00 1EF4
TITLE SOLUTION STRUCTURE OF THE ESSENTIAL RNA POLYMERASE SUBUNIT RPB10 FROM
TITLE 2 METHANOBACTERIUM THERMOAUTOTROPHICUM
COMPND MOL_ID: 1;
COMPND 2 MOLECULE: DNA-DIRECTED RNA POLYMERASE;
COMPND 3 CHAIN: A;
COMPND 4 FRAGMENT: SUBUNIT RPB10;
COMPND 5 SYNONYM: SUBUNIT N;
COMPND 6 EC: 2.7.7.6;
COMPND 7 ENGINEERED: YES
SOURCE MOL_ID: 1;
SOURCE 2 ORGANISM_SCIENTIFIC: METHANOTHERMOBACTER THERMAUTOTROPHICUS;
SOURCE 3 ORGANISM_TAXID: 145262;
SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI;
SOURCE 5 EXPRESSION_SYSTEM_TAXID: 562;
SOURCE 6 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID;
SOURCE 7 EXPRESSION_SYSTEM_PLASMID: PET15B
KEYWDS THREE HELIX BUNDLE, ZINC BINDING, STRUCTURAL GENOMICS, PSI, PROTEIN
KEYWDS 2 STRUCTURE INITIATIVE, NORTHEAST STRUCTURAL GENOMICS CONSORTIUM,
KEYWDS 3 NESG, TRANSFERASE
EXPDTA SOLUTION NMR
NUMMDL 20
AUTHOR C.D.MACKERETH,C.H.ARROWSMITH,A.M.EDWARDS,L.P.MCINTOSH,NORTHEAST
AUTHOR 2 STRUCTURAL GENOMICS CONSORTIUM (NESG)
REVDAT 5 16-FEB-22 1EF4 1 REMARK LINK
REVDAT 4 24-FEB-09 1EF4 1 VERSN
REVDAT 3 25-JAN-05 1EF4 1 JRNL AUTHOR KEYWDS REMARK
REVDAT 2 02-AUG-00 1EF4 1 JRNL
REVDAT 1 14-JUN-00 1EF4 0
JRNL AUTH C.D.MACKERETH,C.H.ARROWSMITH,A.M.EDWARDS,L.P.MCINTOSH
JRNL TITL ZINC-BUNDLE STRUCTURE OF THE ESSENTIAL RNA POLYMERASE
JRNL TITL 2 SUBUNIT RPB10 FROM METHANOBACTERIUM THERMOAUTOTROPHICUM.
JRNL REF PROC.NATL.ACAD.SCI.USA V. 97 6316 2000
JRNL REFN ISSN 0027-8424
JRNL PMID 10841539
JRNL DOI 10.1073/PNAS.97.12.6316
REMARK 2
REMARK 2 RESOLUTION. NOT APPLICABLE.
REMARK 3
REMARK 3 REFINEMENT.
REMARK 3 PROGRAM : X-PLOR 3.851, ARIA 1999
REMARK 3 AUTHORS : BRUNGER (X-PLOR), NILGES (ARIA)
REMARK 3
REMARK 3 OTHER REFINEMENT REMARKS: REFINED USING ARIA AMBIGUOUS AND
REMARK 3 UNAMBIGUOUS RESTRAINTS, AND INCLUDING RESTRAINTS FOR DIHEDRAL
REMARK 3 ANGLES AND HYDROGEN BOND DISTANCES. ZINC COORDINATION TO CYS 6,9,
REMARK 3 43,44 WITH IDEALIZED TETRAHEDRAL RESTRAINTS WERE ADDED IN THE
REMARK 3 FINAL ROUNDS OF REFINEMENT; THE COORDINATING LIGANDS AND THEIR
REMARK 3 GEOMETRIC ARRANGEMENT WERE IDENTIFIED BASED ON INITIAL NOE-
REMARK 3 DERIVED STRUCTURES CALCULATED WITHOUT INCLUSION OF THE METAL
REMARK 3 ION. THREE N- TERMINAL RESIDUES (GLY-SER-HIS) REMAINING FROM
REMARK 3 CLEAVAGE OF THE HIS-TAG WERE DISORDERED AND NOT INCLUDED IN THE
REMARK 3 FINAL ENSEMBLE.
REMARK 4
REMARK 4 1EF4 COMPLIES WITH FORMAT V. 3.15, 01-DEC-08
REMARK 100
REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 14-FEB-00.
REMARK 100 THE DEPOSITION ID IS D_1000010516.
REMARK 210
REMARK 210 EXPERIMENTAL DETAILS
REMARK 210 EXPERIMENT TYPE : NMR
REMARK 210 TEMPERATURE (KELVIN) : 303.00
REMARK 210 PH : 7.50
REMARK 210 IONIC STRENGTH : 150MM_NACL
REMARK 210 PRESSURE : AMBIENT
REMARK 210 SAMPLE CONTENTS : 0.5MM RPB10 U-15N,13C 20MM
REMARK 210 DEUTERATED D-TRIS; 0.15M NACL;
REMARK 210 2MM BETA- MERCAPTOETHANOL; 99%
REMARK 210 D2O, 1% H2O
REMARK 210
REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D METHYL-METHYL 13C_ SEPARATED
REMARK 210 NOESY; 2D NOESY; 3D_13C-
REMARK 210 SEPARATED_ NOESY; 3D_15N-
REMARK 210 SEPARATED_ NOESY; HNHA; 2D CT-
REMARK 210 HMQC-J
REMARK 210 SPECTROMETER FIELD STRENGTH : 500 MHZ
REMARK 210 SPECTROMETER MODEL : UNITY
REMARK 210 SPECTROMETER MANUFACTURER : VARIAN
REMARK 210
REMARK 210 STRUCTURE DETERMINATION.
REMARK 210 SOFTWARE USED : VNMR 6, FELIX 95.0
REMARK 210 METHOD USED : DISTANCE GEOMETRY WITH SIMULATED
REMARK 210 ANNEALING
REMARK 210
REMARK 210 CONFORMERS, NUMBER CALCULATED : 60
REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20
REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH ACCEPTABLE
REMARK 210 COVALENT GEOMETRY
REMARK 210
REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1
REMARK 210
REMARK 210 REMARK: THIS STRUCTURE WAS DETERMINED USING TRIPLE- RESONANCE NMR
REMARK 210 SPECTROSCOPY.
REMARK 215
REMARK 215 NMR STUDY
REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION
REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT
REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON
REMARK 215 THESE RECORDS ARE MEANINGLESS.
REMARK 300
REMARK 300 BIOMOLECULE: 1
REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM
REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN
REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON
REMARK 300 BURIED SURFACE AREA.
REMARK 350
REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN
REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE
REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS
REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND
REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN.
REMARK 350
REMARK 350 BIOMOLECULE: 1
REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC
REMARK 350 APPLY THE FOLLOWING TO CHAINS: A
REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000
REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000
REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000
REMARK 500
REMARK 500 GEOMETRY AND STEREOCHEMISTRY
REMARK 500 SUBTOPIC: CLOSE CONTACTS
REMARK 500
REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT.
REMARK 500
REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE
REMARK 500 O VAL A 33 H LEU A 37 1.54
REMARK 500
REMARK 500 REMARK: NULL
REMARK 500
REMARK 500 GEOMETRY AND STEREOCHEMISTRY
REMARK 500 SUBTOPIC: TORSION ANGLES
REMARK 500
REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS:
REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER;
REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE).
REMARK 500
REMARK 500 STANDARD TABLE:
REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2)
REMARK 500
REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI-
REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400
REMARK 500
REMARK 500 M RES CSSEQI PSI PHI
REMARK 500 1 VAL A 4 -76.51 65.18
REMARK 500 1 ARG A 5 -178.73 -53.26
REMARK 500 1 SER A 8 -55.96 -179.40
REMARK 500 1 ASP A 29 107.62 -56.72
REMARK 500 1 ARG A 41 132.68 63.63
REMARK 500 1 HIS A 51 -73.89 -87.66
REMARK 500 1 VAL A 52 56.19 34.93
REMARK 500 1 GLU A 53 90.98 -51.18
REMARK 500 2 VAL A 4 -67.88 66.53
REMARK 500 2 ARG A 5 -168.30 -75.18
REMARK 500 2 CYS A 6 -157.56 -58.33
REMARK 500 2 LEU A 7 30.94 84.74
REMARK 500 2 SER A 8 -76.12 -174.83
REMARK 500 2 LYS A 40 150.88 64.97
REMARK 500 2 ARG A 41 148.53 60.27
REMARK 500 2 LEU A 48 -70.14 -70.63
REMARK 500 2 SER A 50 -78.38 -76.82
REMARK 500 2 VAL A 52 68.05 35.57
REMARK 500 3 VAL A 4 159.85 60.69
REMARK 500 3 ARG A 5 -178.20 74.13
REMARK 500 3 SER A 8 -45.16 177.64
REMARK 500 3 LYS A 40 -80.66 59.57
REMARK 500 3 ARG A 46 -39.37 -38.65
REMARK 500 3 VAL A 52 108.77 -41.48
REMARK 500 3 THR A 54 80.59 53.29
REMARK 500 4 VAL A 4 -77.91 64.45
REMARK 500 4 ARG A 5 179.27 -55.86
REMARK 500 4 CYS A 6 -164.38 -57.84
REMARK 500 4 LEU A 7 28.61 93.42
REMARK 500 4 SER A 8 -72.92 173.69
REMARK 500 4 LYS A 40 -171.82 -54.69
REMARK 500 4 ARG A 41 -49.99 84.29
REMARK 500 4 TYR A 42 -23.92 89.77
REMARK 500 4 ILE A 49 -32.70 -39.66
REMARK 500 4 HIS A 51 -77.54 -87.32
REMARK 500 4 VAL A 52 94.43 34.26
REMARK 500 5 VAL A 4 -76.53 64.98
REMARK 500 5 ARG A 5 -179.64 -55.40
REMARK 500 5 SER A 8 -60.18 -179.06
REMARK 500 5 SER A 14 -72.75 -63.20
REMARK 500 5 ASP A 29 109.83 -55.67
REMARK 500 5 ARG A 41 -42.09 -148.54
REMARK 500 5 TYR A 42 -39.10 89.91
REMARK 500 5 SER A 50 -76.84 -86.88
REMARK 500 5 VAL A 52 27.70 44.99
REMARK 500 5 GLU A 53 75.26 47.23
REMARK 500 6 VAL A 4 161.66 60.93
REMARK 500 6 ARG A 5 -161.12 79.83
REMARK 500 6 SER A 8 -61.54 -172.64
REMARK 500 6 LEU A 39 109.89 -41.26
REMARK 500
REMARK 500 THIS ENTRY HAS 181 RAMACHANDRAN OUTLIERS.
REMARK 500
REMARK 500 REMARK: NULL
REMARK 620
REMARK 620 METAL COORDINATION
REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER;
REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE):
REMARK 620
REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL
REMARK 620 ZN A 56 ZN
REMARK 620 N RES CSSEQI ATOM
REMARK 620 1 CYS A 6 SG
REMARK 620 2 CYS A 9 SG 111.8
REMARK 620 3 CYS A 43 SG 113.9 104.7
REMARK 620 4 CYS A 44 SG 111.1 112.7 102.1
REMARK 620 N 1 2 3
REMARK 800
REMARK 800 SITE
REMARK 800 SITE_IDENTIFIER: AC1
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 56
REMARK 900
REMARK 900 RELATED ENTRIES
REMARK 900 RELATED ID: TT11 RELATED DB: TARGETDB
DBREF 1EF4 A 1 55 UNP O26147 RPON_METTH 1 55
SEQRES 1 A 55 MET ILE PRO VAL ARG CYS LEU SER CYS GLY LYS PRO VAL
SEQRES 2 A 55 SER ALA TYR PHE ASN GLU TYR GLN ARG ARG VAL ALA ASP
SEQRES 3 A 55 GLY GLU ASP PRO LYS ASP VAL LEU ASP ASP LEU GLY LEU
SEQRES 4 A 55 LYS ARG TYR CYS CYS ARG ARG MET LEU ILE SER HIS VAL
SEQRES 5 A 55 GLU THR TRP
HET ZN A 56 1
HETNAM ZN ZINC ION
FORMUL 2 ZN ZN 2+
HELIX 1 1 SER A 14 ASP A 26 1 13
HELIX 2 2 PRO A 30 LEU A 37 1 8
HELIX 3 3 CYS A 43 LEU A 48 1 6
LINK SG CYS A 6 ZN ZN A 56 1555 1555 2.22
LINK SG CYS A 9 ZN ZN A 56 1555 1555 2.23
LINK SG CYS A 43 ZN ZN A 56 1555 1555 2.32
LINK SG CYS A 44 ZN ZN A 56 1555 1555 2.30
SITE 1 AC1 4 CYS A 6 CYS A 9 CYS A 43 CYS A 44
CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 1.000000 0.000000 0.000000 0.00000
SCALE2 0.000000 1.000000 0.000000 0.00000
SCALE3 0.000000 0.000000 1.000000 0.00000
MODEL 1
Complete list - b 16 2 Bytes