Header list of 1ddp.pdb file
Complete list - 25 20 Bytes
HEADER DNA 26-OCT-95 1DDP
TITLE SOLUTION STRUCTURE OF A CISPLATIN-INDUCED [CATAGCTATG]2 INTERSTRAND
TITLE 2 CROSS-LINK
COMPND MOL_ID: 1;
COMPND 2 MOLECULE: DNA (5'-D(*CP*AP*TP*AP*GP*CP*TP*AP*TP*G)-3');
COMPND 3 CHAIN: A, B;
COMPND 4 ENGINEERED: YES
SOURCE MOL_ID: 1;
SOURCE 2 SYNTHETIC: YES;
SOURCE 3 OTHER_DETAILS: CHEMICALLY SYNTHESIZED
KEYWDS DNA, DOUBLE HELIX, ANTITUMOR DRUG, CIS-DDP, INTERSTRAND CROSS-LINK
EXPDTA SOLUTION NMR
NUMMDL 10
AUTHOR L.ZHU,H.HUANG,B.R.REID,G.P.DROBNY,P.B.HOPKINS
REVDAT 4 13-JUL-11 1DDP 1 VERSN
REVDAT 3 23-JUN-10 1DDP 1 HET
REVDAT 2 24-FEB-09 1DDP 1 VERSN
REVDAT 1 08-MAR-96 1DDP 0
JRNL AUTH H.HUANG,L.ZHU,B.R.REID,G.P.DROBNY,P.B.HOPKINS
JRNL TITL SOLUTION STRUCTURE OF A CISPLATIN-INDUCED DNA INTERSTRAND
JRNL TITL 2 CROSS-LINK.
JRNL REF SCIENCE V. 270 1842 1995
JRNL REFN ISSN 0036-8075
JRNL PMID 8525382
REMARK 2
REMARK 2 RESOLUTION. NOT APPLICABLE.
REMARK 3
REMARK 3 REFINEMENT.
REMARK 3 PROGRAM : DISCOVER
REMARK 3 AUTHORS : BIOSYM TECHNOLOGIES
REMARK 3
REMARK 3 OTHER REFINEMENT REMARKS: FINAL RMS COORD. SHIFT 0.55 ANGSTROMS
REMARK 3 NUMBER OF ATOMS USED IN REFINEMENT. NUMBER OF PROTEIN ATOMS 0
REMARK 3 NUMBER OF NUCLEIC ACID ATOMS 643 NUMBER OF HETEROGEN ATOMS 0
REMARK 3 NUMBER OF SOLVENT ATOMS 0 AMBER FORCE FIELDS USED
REMARK 4
REMARK 4 1DDP COMPLIES WITH FORMAT V. 3.15, 01-DEC-08
REMARK 100
REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY BNL.
REMARK 210
REMARK 210 EXPERIMENTAL DETAILS
REMARK 210 EXPERIMENT TYPE : NMR
REMARK 210 TEMPERATURE (KELVIN) : NULL
REMARK 210 PH : NULL
REMARK 210 IONIC STRENGTH : NULL
REMARK 210 PRESSURE : NULL
REMARK 210 SAMPLE CONTENTS : NULL
REMARK 210
REMARK 210 NMR EXPERIMENTS CONDUCTED : NULL
REMARK 210 SPECTROMETER FIELD STRENGTH : NULL
REMARK 210 SPECTROMETER MODEL : NULL
REMARK 210 SPECTROMETER MANUFACTURER : NULL
REMARK 210
REMARK 210 STRUCTURE DETERMINATION.
REMARK 210 SOFTWARE USED : NULL
REMARK 210 METHOD USED : NULL
REMARK 210
REMARK 210 CONFORMERS, NUMBER CALCULATED : NULL
REMARK 210 CONFORMERS, NUMBER SUBMITTED : 10
REMARK 210 CONFORMERS, SELECTION CRITERIA : NULL
REMARK 210
REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : NULL
REMARK 210
REMARK 210 REMARK: BECAUSE THE BOND LENGTH BETWEEN PT AND N7 IN THE CISPLATIN
REMARK 210 CROSS-LINK IS LONGER THAN 2.00 ANGSTROMS, THE PT-N7 BONDS MIGHT
REMARK 210 NOT APPEAR WHEN A PROGRAM READS THIS ENTRY.
REMARK 215
REMARK 215 NMR STUDY
REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION
REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT
REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON
REMARK 215 THESE RECORDS ARE MEANINGLESS.
REMARK 300
REMARK 300 BIOMOLECULE: 1
REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM
REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN
REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON
REMARK 300 BURIED SURFACE AREA.
REMARK 350
REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN
REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE
REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS
REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND
REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN.
REMARK 350
REMARK 350 BIOMOLECULE: 1
REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC
REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B
REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000
REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000
REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000
REMARK 500
REMARK 500 GEOMETRY AND STEREOCHEMISTRY
REMARK 500 SUBTOPIC: COVALENT BOND ANGLES
REMARK 500
REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES
REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE
REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN
REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE).
REMARK 500
REMARK 500 STANDARD TABLE:
REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1)
REMARK 500
REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999
REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996
REMARK 500
REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3
REMARK 500 1 DT A 3 O4' - C1' - N1 ANGL. DEV. = 2.5 DEGREES
REMARK 500 1 DA A 4 O4' - C1' - N9 ANGL. DEV. = 5.9 DEGREES
REMARK 500 1 DG A 5 O4' - C1' - N9 ANGL. DEV. = 3.0 DEGREES
REMARK 500 1 DC A 6 O4' - C1' - N1 ANGL. DEV. = 3.3 DEGREES
REMARK 500 1 DT A 7 O4' - C1' - N1 ANGL. DEV. = 2.1 DEGREES
REMARK 500 1 DA A 8 O4' - C1' - N9 ANGL. DEV. = 2.0 DEGREES
REMARK 500 1 DT A 9 O4' - C1' - N1 ANGL. DEV. = 3.6 DEGREES
REMARK 500 1 DC B 1 O4' - C1' - N1 ANGL. DEV. = 2.7 DEGREES
REMARK 500 1 DT B 3 O4' - C1' - N1 ANGL. DEV. = 2.5 DEGREES
REMARK 500 1 DA B 4 O4' - C1' - N9 ANGL. DEV. = 5.9 DEGREES
REMARK 500 1 DG B 5 O4' - C1' - N9 ANGL. DEV. = 3.0 DEGREES
REMARK 500 1 DC B 6 O4' - C1' - N1 ANGL. DEV. = 3.3 DEGREES
REMARK 500 1 DT B 7 O4' - C1' - N1 ANGL. DEV. = 2.2 DEGREES
REMARK 500 1 DA B 8 O4' - C1' - N9 ANGL. DEV. = 2.0 DEGREES
REMARK 500 1 DT B 9 O4' - C1' - N1 ANGL. DEV. = 3.6 DEGREES
REMARK 500 2 DT A 3 O4' - C1' - N1 ANGL. DEV. = 2.5 DEGREES
REMARK 500 2 DA A 4 O4' - C1' - N9 ANGL. DEV. = 5.9 DEGREES
REMARK 500 2 DG A 5 O4' - C1' - N9 ANGL. DEV. = 3.0 DEGREES
REMARK 500 2 DC A 6 O4' - C1' - N1 ANGL. DEV. = 3.9 DEGREES
REMARK 500 2 DT A 7 O4' - C1' - N1 ANGL. DEV. = 2.0 DEGREES
REMARK 500 2 DA A 8 O4' - C1' - N9 ANGL. DEV. = 2.0 DEGREES
REMARK 500 2 DT A 9 O4' - C1' - N1 ANGL. DEV. = 3.5 DEGREES
REMARK 500 2 DT B 3 O4' - C1' - N1 ANGL. DEV. = 2.5 DEGREES
REMARK 500 2 DA B 4 O4' - C1' - N9 ANGL. DEV. = 6.0 DEGREES
REMARK 500 2 DG B 5 O4' - C1' - N9 ANGL. DEV. = 3.1 DEGREES
REMARK 500 2 DC B 6 O4' - C1' - N1 ANGL. DEV. = 3.3 DEGREES
REMARK 500 2 DT B 7 O4' - C1' - N1 ANGL. DEV. = 2.2 DEGREES
REMARK 500 2 DA B 8 O4' - C1' - N9 ANGL. DEV. = 2.0 DEGREES
REMARK 500 2 DT B 9 O4' - C1' - N1 ANGL. DEV. = 3.5 DEGREES
REMARK 500 3 DT A 3 O4' - C1' - N1 ANGL. DEV. = 2.5 DEGREES
REMARK 500 3 DA A 4 O4' - C1' - N9 ANGL. DEV. = 5.9 DEGREES
REMARK 500 3 DG A 5 O4' - C1' - N9 ANGL. DEV. = 3.0 DEGREES
REMARK 500 3 DC A 6 O4' - C1' - N1 ANGL. DEV. = 3.8 DEGREES
REMARK 500 3 DT A 7 O4' - C1' - N1 ANGL. DEV. = 2.0 DEGREES
REMARK 500 3 DA A 8 O4' - C1' - N9 ANGL. DEV. = 2.1 DEGREES
REMARK 500 3 DT A 9 O4' - C1' - N1 ANGL. DEV. = 3.6 DEGREES
REMARK 500 3 DC B 1 O4' - C1' - N1 ANGL. DEV. = 2.7 DEGREES
REMARK 500 3 DT B 3 O4' - C1' - N1 ANGL. DEV. = 2.5 DEGREES
REMARK 500 3 DA B 4 O4' - C1' - N9 ANGL. DEV. = 6.0 DEGREES
REMARK 500 3 DG B 5 O4' - C1' - N9 ANGL. DEV. = 3.1 DEGREES
REMARK 500 3 DC B 6 O4' - C1' - N1 ANGL. DEV. = 3.3 DEGREES
REMARK 500 3 DT B 7 O4' - C1' - N1 ANGL. DEV. = 2.1 DEGREES
REMARK 500 3 DA B 8 O4' - C1' - N9 ANGL. DEV. = 1.9 DEGREES
REMARK 500 3 DT B 9 O4' - C1' - N1 ANGL. DEV. = 3.3 DEGREES
REMARK 500 4 DC A 1 O4' - C1' - N1 ANGL. DEV. = 2.7 DEGREES
REMARK 500 4 DT A 3 O4' - C1' - N1 ANGL. DEV. = 2.5 DEGREES
REMARK 500 4 DA A 4 O4' - C1' - N9 ANGL. DEV. = 6.1 DEGREES
REMARK 500 4 DG A 5 O4' - C1' - N9 ANGL. DEV. = 3.0 DEGREES
REMARK 500 4 DC A 6 O4' - C1' - N1 ANGL. DEV. = 3.4 DEGREES
REMARK 500 4 DT A 7 O4' - C1' - N1 ANGL. DEV. = 2.0 DEGREES
REMARK 500
REMARK 500 THIS ENTRY HAS 158 ANGLE DEVIATIONS.
REMARK 500
REMARK 500 REMARK: NULL
REMARK 500
REMARK 500 GEOMETRY AND STEREOCHEMISTRY
REMARK 500 SUBTOPIC: PLANAR GROUPS
REMARK 500
REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL
REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE
REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN
REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS
REMARK 500 AN RMSD GREATER THAN THIS VALUE
REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER;
REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE).
REMARK 500
REMARK 500 M RES CSSEQI RMS TYPE
REMARK 500 1 DA A 2 0.05 SIDE CHAIN
REMARK 500 1 DT A 3 0.06 SIDE CHAIN
REMARK 500 1 DG A 5 0.07 SIDE CHAIN
REMARK 500 1 DA A 8 0.05 SIDE CHAIN
REMARK 500 1 DA B 2 0.05 SIDE CHAIN
REMARK 500 1 DT B 3 0.06 SIDE CHAIN
REMARK 500 1 DG B 5 0.07 SIDE CHAIN
REMARK 500 1 DA B 8 0.06 SIDE CHAIN
REMARK 500 2 DA A 2 0.06 SIDE CHAIN
REMARK 500 2 DT A 3 0.07 SIDE CHAIN
REMARK 500 2 DG A 5 0.07 SIDE CHAIN
REMARK 500 2 DA A 8 0.06 SIDE CHAIN
REMARK 500 2 DA B 2 0.05 SIDE CHAIN
REMARK 500 2 DT B 3 0.07 SIDE CHAIN
REMARK 500 2 DG B 5 0.07 SIDE CHAIN
REMARK 500 2 DA B 8 0.06 SIDE CHAIN
REMARK 500 3 DA A 2 0.05 SIDE CHAIN
REMARK 500 3 DT A 3 0.06 SIDE CHAIN
REMARK 500 3 DG A 5 0.07 SIDE CHAIN
REMARK 500 3 DA A 8 0.05 SIDE CHAIN
REMARK 500 3 DA B 2 0.05 SIDE CHAIN
REMARK 500 3 DT B 3 0.06 SIDE CHAIN
REMARK 500 3 DG B 5 0.07 SIDE CHAIN
REMARK 500 3 DA B 8 0.06 SIDE CHAIN
REMARK 500 4 DT A 3 0.06 SIDE CHAIN
REMARK 500 4 DG A 5 0.07 SIDE CHAIN
REMARK 500 4 DA A 8 0.05 SIDE CHAIN
REMARK 500 4 DA B 2 0.06 SIDE CHAIN
REMARK 500 4 DG B 5 0.07 SIDE CHAIN
REMARK 500 4 DA B 8 0.06 SIDE CHAIN
REMARK 500 5 DG A 5 0.07 SIDE CHAIN
REMARK 500 5 DG A 10 0.06 SIDE CHAIN
REMARK 500 5 DA B 2 0.06 SIDE CHAIN
REMARK 500 5 DT B 3 0.06 SIDE CHAIN
REMARK 500 5 DG B 5 0.07 SIDE CHAIN
REMARK 500 6 DT A 3 0.06 SIDE CHAIN
REMARK 500 6 DG A 5 0.07 SIDE CHAIN
REMARK 500 6 DA A 8 0.06 SIDE CHAIN
REMARK 500 6 DG A 10 0.06 SIDE CHAIN
REMARK 500 6 DA B 2 0.09 SIDE CHAIN
REMARK 500 6 DG B 5 0.07 SIDE CHAIN
REMARK 500 6 DA B 8 0.06 SIDE CHAIN
REMARK 500 7 DA A 2 0.06 SIDE CHAIN
REMARK 500 7 DT A 3 0.06 SIDE CHAIN
REMARK 500 7 DG A 5 0.07 SIDE CHAIN
REMARK 500 7 DG A 10 0.06 SIDE CHAIN
REMARK 500 7 DT B 3 0.06 SIDE CHAIN
REMARK 500 7 DG B 5 0.07 SIDE CHAIN
REMARK 500 7 DA B 8 0.06 SIDE CHAIN
REMARK 500 8 DA A 2 0.05 SIDE CHAIN
REMARK 500
REMARK 500 THIS ENTRY HAS 72 PLANE DEVIATIONS.
REMARK 500
REMARK 500 REMARK: NULL
REMARK 620
REMARK 620 METAL COORDINATION
REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER;
REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE):
REMARK 620
REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL
REMARK 620 1 CPT A 11 PT1
REMARK 620 N RES CSSEQI ATOM
REMARK 620 1 DG A 5 N7
REMARK 620 2 CPT A 11 N1 89.0
REMARK 620 3 CPT A 11 N2 178.8 89.9
REMARK 620 4 DG B 5 N7 92.2 178.8 89.0
REMARK 620 N 1 2 3
REMARK 800
REMARK 800 SITE
REMARK 800 SITE_IDENTIFIER: AC1
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CPT A 11
DBREF 1DDP A 1 10 PDB 1DDP 1DDP 1 10
DBREF 1DDP B 1 10 PDB 1DDP 1DDP 1 10
SEQRES 1 A 10 DC DA DT DA DG DC DT DA DT DG
SEQRES 1 B 10 DC DA DT DA DG DC DT DA DT DG
HET CPT A 11 9
HETNAM CPT CISPLATIN
HETSYN CPT DIAMMINE(DICHLORO)PLATINUM
FORMUL 3 CPT CL2 H6 N2 PT
LINK N7 DG A 5 PT1 CPT A 11 1555 1555 2.01
LINK PT1 CPT A 11 N7 DG B 5 1555 1555 2.01
SITE 1 AC1 2 DG A 5 DG B 5
CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 1.000000 0.000000 0.000000 0.00000
SCALE2 0.000000 1.000000 0.000000 0.00000
SCALE3 0.000000 0.000000 1.000000 0.00000
MODEL 1
Complete list - 25 20 Bytes