Header list of 1cld.pdb file
Complete list - b 16 2 Bytes
HEADER TRANSCRIPTION REGULATION 06-JUN-95 1CLD
TITLE DNA-BINDING PROTEIN
COMPND MOL_ID: 1;
COMPND 2 MOLECULE: CD2-LAC9;
COMPND 3 CHAIN: A;
COMPND 4 ENGINEERED: YES;
COMPND 5 MUTATION: YES
SOURCE MOL_ID: 1;
SOURCE 2 ORGANISM_SCIENTIFIC: KLUYVEROMYCES LACTIS;
SOURCE 3 ORGANISM_TAXID: 28985;
SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI;
SOURCE 5 EXPRESSION_SYSTEM_TAXID: 562
KEYWDS ZINC-BINDING DOMAIN, TRANSCRIPTION REGULATION
EXPDTA SOLUTION NMR
NUMMDL 29
AUTHOR K.H.GARDNER,J.E.COLEMAN
REVDAT 5 16-FEB-22 1CLD 1 REMARK LINK
REVDAT 4 24-FEB-09 1CLD 1 VERSN
REVDAT 3 01-APR-03 1CLD 1 JRNL
REVDAT 2 09-JUN-99 1CLD 3 JRNL ATOM
REVDAT 1 15-SEP-95 1CLD 0
JRNL AUTH K.H.GARDNER,S.F.ANDERSON,J.E.COLEMAN
JRNL TITL SOLUTION STRUCTURE OF THE KLUYVEROMYCES LACTIS LAC9 CD2 CYS6
JRNL TITL 2 DNA-BINDING DOMAIN.
JRNL REF NAT.STRUCT.BIOL. V. 2 898 1995
JRNL REFN ISSN 1072-8368
JRNL PMID 7552715
JRNL DOI 10.1038/NSB1095-898
REMARK 1
REMARK 1 REFERENCE 1
REMARK 1 AUTH K.H.GARDNER,J.E.COLEMAN
REMARK 1 TITL 113CD-1H HETEROTOCSY: A METHOD FOR DETERMINING METAL-PROTEIN
REMARK 1 TITL 2 CONNECTIVITIES
REMARK 1 REF J.BIOMOL.NMR V. 4 761 1994
REMARK 1 REFN ISSN 0925-2738
REMARK 2
REMARK 2 RESOLUTION. NOT APPLICABLE.
REMARK 3
REMARK 3 REFINEMENT.
REMARK 3 PROGRAM : X-PLOR 3.1
REMARK 3 AUTHORS : BRUNGER
REMARK 3
REMARK 3 OTHER REFINEMENT REMARKS: NULL
REMARK 4
REMARK 4 1CLD COMPLIES WITH FORMAT V. 3.15, 01-DEC-08
REMARK 100
REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY BNL.
REMARK 100 THE DEPOSITION ID IS D_1000172370.
REMARK 210
REMARK 210 EXPERIMENTAL DETAILS
REMARK 210 EXPERIMENT TYPE : NMR
REMARK 210 TEMPERATURE (KELVIN) : NULL
REMARK 210 PH : NULL
REMARK 210 IONIC STRENGTH : NULL
REMARK 210 PRESSURE : NULL
REMARK 210 SAMPLE CONTENTS : NULL
REMARK 210
REMARK 210 NMR EXPERIMENTS CONDUCTED : NULL
REMARK 210 SPECTROMETER FIELD STRENGTH : NULL
REMARK 210 SPECTROMETER MODEL : NULL
REMARK 210 SPECTROMETER MANUFACTURER : NULL
REMARK 210
REMARK 210 STRUCTURE DETERMINATION.
REMARK 210 SOFTWARE USED : NULL
REMARK 210 METHOD USED : NULL
REMARK 210
REMARK 210 CONFORMERS, NUMBER CALCULATED : NULL
REMARK 210 CONFORMERS, NUMBER SUBMITTED : 29
REMARK 210 CONFORMERS, SELECTION CRITERIA : NULL
REMARK 210
REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : NULL
REMARK 210
REMARK 210 REMARK: NULL
REMARK 215
REMARK 215 NMR STUDY
REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION
REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT
REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON
REMARK 215 THESE RECORDS ARE MEANINGLESS.
REMARK 300
REMARK 300 BIOMOLECULE: 1
REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM
REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN
REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON
REMARK 300 BURIED SURFACE AREA.
REMARK 350
REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN
REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE
REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS
REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND
REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN.
REMARK 350
REMARK 350 BIOMOLECULE: 1
REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC
REMARK 350 APPLY THE FOLLOWING TO CHAINS: A
REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000
REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000
REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000
REMARK 465
REMARK 465 MISSING RESIDUES
REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE
REMARK 465 EXPERIMENT. (RES=RESIDUE NAME; C=CHAIN IDENTIFIER;
REMARK 465 SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.)
REMARK 465 MODELS 1-29
REMARK 465 RES C SSSEQI
REMARK 465 MET A 84
REMARK 465 LYS A 85
REMARK 465 LYS A 86
REMARK 465 SER A 87
REMARK 465 SER A 88
REMARK 465 GLU A 89
REMARK 465 VAL A 90
REMARK 465 MET A 91
REMARK 465 HIS A 92
REMARK 465 PRO A 126
REMARK 465 GLN A 127
REMARK 465 VAL A 128
REMARK 465 VAL A 129
REMARK 465 ARG A 130
REMARK 465 THR A 131
REMARK 465 PRO A 132
REMARK 465 LEU A 133
REMARK 465 THR A 134
REMARK 465 ARG A 135
REMARK 465 ALA A 136
REMARK 465 HIS A 137
REMARK 465 LEU A 138
REMARK 465 THR A 139
REMARK 465 GLU A 140
REMARK 465 MET A 141
REMARK 465 GLU A 142
REMARK 465 ASN A 143
REMARK 465 ARG A 144
REMARK 500
REMARK 500 GEOMETRY AND STEREOCHEMISTRY
REMARK 500 SUBTOPIC: TORSION ANGLES
REMARK 500
REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS:
REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER;
REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE).
REMARK 500
REMARK 500 STANDARD TABLE:
REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2)
REMARK 500
REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI-
REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400
REMARK 500
REMARK 500 M RES CSSEQI PSI PHI
REMARK 500 1 LYS A 104 145.14 57.21
REMARK 500 1 LYS A 107 57.97 74.60
REMARK 500 1 ASN A 119 82.04 48.01
REMARK 500 2 LYS A 104 93.84 37.14
REMARK 500 2 LYS A 107 64.86 84.52
REMARK 500 2 ASN A 119 85.76 43.48
REMARK 500 3 ALA A 94 -167.66 -177.64
REMARK 500 3 LYS A 104 95.06 35.84
REMARK 500 3 LYS A 107 70.79 81.65
REMARK 500 3 CYS A 112 155.64 -46.10
REMARK 500 3 ASN A 119 84.33 56.24
REMARK 500 4 ALA A 94 167.22 62.52
REMARK 500 4 LYS A 104 97.01 36.75
REMARK 500 4 LYS A 107 60.71 81.70
REMARK 500 4 LYS A 117 -70.16 -65.98
REMARK 500 4 ASN A 119 81.25 41.11
REMARK 500 5 LYS A 104 96.84 35.39
REMARK 500 5 LYS A 107 62.67 82.82
REMARK 500 5 ASN A 119 82.53 44.21
REMARK 500 5 ASP A 121 103.98 -51.39
REMARK 500 6 ALA A 94 154.48 58.24
REMARK 500 6 LYS A 104 96.04 34.93
REMARK 500 6 LYS A 107 69.04 83.50
REMARK 500 6 ASN A 119 73.86 61.14
REMARK 500 7 ALA A 94 153.54 60.29
REMARK 500 7 LYS A 102 59.42 71.63
REMARK 500 7 LYS A 104 97.35 35.02
REMARK 500 7 LYS A 107 73.37 80.82
REMARK 500 7 ASN A 119 80.53 45.24
REMARK 500 8 LYS A 104 135.17 56.83
REMARK 500 8 LYS A 107 62.86 76.60
REMARK 500 8 ASN A 119 72.28 47.94
REMARK 500 9 LYS A 104 96.76 34.90
REMARK 500 9 LYS A 107 77.08 83.18
REMARK 500 9 CYS A 112 155.91 -45.09
REMARK 500 9 ASN A 119 81.45 42.00
REMARK 500 10 TRP A 103 30.91 -99.97
REMARK 500 10 LYS A 104 100.12 36.14
REMARK 500 10 LYS A 107 74.59 81.31
REMARK 500 10 ASN A 119 71.67 48.75
REMARK 500 11 LYS A 104 98.41 36.40
REMARK 500 11 LYS A 107 65.27 80.15
REMARK 500 11 CYS A 112 156.55 -44.68
REMARK 500 11 ASN A 119 80.46 44.99
REMARK 500 12 ALA A 94 142.76 65.03
REMARK 500 12 LYS A 104 97.06 35.09
REMARK 500 12 LYS A 107 72.87 81.10
REMARK 500 12 ASN A 119 83.51 47.68
REMARK 500 13 LYS A 102 47.50 74.47
REMARK 500 13 TRP A 103 30.42 -95.65
REMARK 500
REMARK 500 THIS ENTRY HAS 130 RAMACHANDRAN OUTLIERS.
REMARK 500
REMARK 500 REMARK: NULL
REMARK 620
REMARK 620 METAL COORDINATION
REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER;
REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE):
REMARK 620
REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL
REMARK 620 CD A 145 CD
REMARK 620 N RES CSSEQI ATOM
REMARK 620 1 CYS A 95 SG
REMARK 620 2 CYS A 98 SG 110.9
REMARK 620 3 CYS A 105 SG 103.1 121.5
REMARK 620 4 CYS A 112 SG 87.6 128.5 98.2
REMARK 620 N 1 2 3
REMARK 620
REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL
REMARK 620 CD A 146 CD
REMARK 620 N RES CSSEQI ATOM
REMARK 620 1 CYS A 95 SG
REMARK 620 2 CYS A 112 SG 86.8
REMARK 620 3 CYS A 115 SG 132.1 97.6
REMARK 620 4 CYS A 122 SG 107.7 111.5 114.6
REMARK 620 N 1 2 3
REMARK 800
REMARK 800 SITE
REMARK 800 SITE_IDENTIFIER: AC1
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CD A 145
REMARK 800
REMARK 800 SITE_IDENTIFIER: AC2
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CD A 146
DBREF 1CLD A 85 144 UNP P08657 LAC9_KLULA 85 144
SEQRES 1 A 61 MET LYS LYS SER SER GLU VAL MET HIS GLN ALA CYS ASP
SEQRES 2 A 61 ALA CYS ARG LYS LYS LYS TRP LYS CYS SER LYS THR VAL
SEQRES 3 A 61 PRO THR CYS THR ASN CYS LEU LYS TYR ASN LEU ASP CYS
SEQRES 4 A 61 VAL TYR SER PRO GLN VAL VAL ARG THR PRO LEU THR ARG
SEQRES 5 A 61 ALA HIS LEU THR GLU MET GLU ASN ARG
HET CD A 145 1
HET CD A 146 1
HETNAM CD CADMIUM ION
FORMUL 2 CD 2(CD 2+)
HELIX 1 H1 ASP A 96 LYS A 101 1 6
HELIX 2 H2 THR A 113 TYR A 118 1 6
LINK SG CYS A 95 CD CD A 145 1555 1555 2.52
LINK SG CYS A 95 CD CD A 146 1555 1555 2.53
LINK SG CYS A 98 CD CD A 145 1555 1555 2.45
LINK SG CYS A 105 CD CD A 145 1555 1555 2.46
LINK SG CYS A 112 CD CD A 145 1555 1555 2.51
LINK SG CYS A 112 CD CD A 146 1555 1555 2.53
LINK SG CYS A 115 CD CD A 146 1555 1555 2.51
LINK SG CYS A 122 CD CD A 146 1555 1555 2.53
CISPEP 1 VAL A 109 PRO A 110 1 -0.58
CISPEP 2 VAL A 109 PRO A 110 2 -0.69
CISPEP 3 VAL A 109 PRO A 110 3 -0.72
CISPEP 4 VAL A 109 PRO A 110 4 -0.61
CISPEP 5 VAL A 109 PRO A 110 5 -0.61
CISPEP 6 VAL A 109 PRO A 110 6 -0.74
CISPEP 7 VAL A 109 PRO A 110 7 -0.85
CISPEP 8 VAL A 109 PRO A 110 8 -0.65
CISPEP 9 VAL A 109 PRO A 110 9 -0.99
CISPEP 10 VAL A 109 PRO A 110 10 -0.46
CISPEP 11 VAL A 109 PRO A 110 11 -0.61
CISPEP 12 VAL A 109 PRO A 110 12 -0.65
CISPEP 13 VAL A 109 PRO A 110 13 -0.89
CISPEP 14 VAL A 109 PRO A 110 14 -0.53
CISPEP 15 VAL A 109 PRO A 110 15 -0.94
CISPEP 16 VAL A 109 PRO A 110 16 -0.46
CISPEP 17 VAL A 109 PRO A 110 17 -0.64
CISPEP 18 VAL A 109 PRO A 110 18 -0.51
CISPEP 19 VAL A 109 PRO A 110 19 -0.64
CISPEP 20 VAL A 109 PRO A 110 20 -0.78
CISPEP 21 VAL A 109 PRO A 110 21 -0.45
CISPEP 22 VAL A 109 PRO A 110 22 -0.61
CISPEP 23 VAL A 109 PRO A 110 23 -1.00
CISPEP 24 VAL A 109 PRO A 110 24 -0.71
CISPEP 25 VAL A 109 PRO A 110 25 -0.68
CISPEP 26 VAL A 109 PRO A 110 26 -0.93
CISPEP 27 VAL A 109 PRO A 110 27 -0.59
CISPEP 28 VAL A 109 PRO A 110 28 -0.53
CISPEP 29 VAL A 109 PRO A 110 29 -0.55
SITE 1 AC1 5 CYS A 95 CYS A 98 CYS A 105 CYS A 112
SITE 2 AC1 5 CD A 146
SITE 1 AC2 6 CYS A 95 ALA A 97 CYS A 112 CYS A 115
SITE 2 AC2 6 CYS A 122 CD A 145
CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 1.000000 0.000000 0.000000 0.00000
SCALE2 0.000000 1.000000 0.000000 0.00000
SCALE3 0.000000 0.000000 1.000000 0.00000
MODEL 1
Complete list - b 16 2 Bytes