Header list of 1c2n.pdb file
Complete list - r 25 2 Bytes
HEADER ELECTRON TRANSPORT 27-APR-98 1C2N
TITLE CYTOCHROME C2, NMR, 20 STRUCTURES
COMPND MOL_ID: 1;
COMPND 2 MOLECULE: CYTOCHROME C2;
COMPND 3 CHAIN: A
SOURCE MOL_ID: 1;
SOURCE 2 ORGANISM_SCIENTIFIC: RHODOBACTER CAPSULATUS;
SOURCE 3 ORGANISM_TAXID: 272942;
SOURCE 4 STRAIN: SB1003
KEYWDS ELECTRON TRANSPORT
EXPDTA SOLUTION NMR
NUMMDL 20
AUTHOR F.CORDIER,M.S.CAFFREY,B.BRUTSCHER,M.A.CUSANOVICH,D.MARION,
AUTHOR 2 M.BLACKLEDGE
REVDAT 3 13-JUL-11 1C2N 1 VERSN
REVDAT 2 24-FEB-09 1C2N 1 VERSN
REVDAT 1 23-MAR-99 1C2N 0
JRNL AUTH F.CORDIER,M.CAFFREY,B.BRUTSCHER,M.A.CUSANOVICH,D.MARION,
JRNL AUTH 2 M.BLACKLEDGE
JRNL TITL SOLUTION STRUCTURE, ROTATIONAL DIFFUSION ANISOTROPY AND
JRNL TITL 2 LOCAL BACKBONE DYNAMICS OF RHODOBACTER CAPSULATUS CYTOCHROME
JRNL TITL 3 C2.
JRNL REF J.MOL.BIOL. V. 281 341 1998
JRNL REFN ISSN 0022-2836
JRNL PMID 9698552
JRNL DOI 10.1006/JMBI.1998.1950
REMARK 2
REMARK 2 RESOLUTION. NOT APPLICABLE.
REMARK 3
REMARK 3 REFINEMENT.
REMARK 3 PROGRAM : DISCOVER
REMARK 3 AUTHORS : BIOSYM/MSI
REMARK 3
REMARK 3 OTHER REFINEMENT REMARKS: STRUCTURE CALCULATIONS WERE PERFORMED
REMARK 3 USING DISCOVER PROGRAMS COMPRISED IN THE INSIGHTII PACKAGE FROM
REMARK 3 BIOSYM /MOLECULAR SIMULATIONS. THE AMBER4 FORCE FIELD WAS USED IN
REMARK 3 THE RESTRAINED MOLECULAR DYNAMICS REFINEMENT STAGE. FOR FURTHER
REMARK 3 DETAILS SEE BLACKLEDGE ET AL. 1995, 245, 661-681.
REMARK 4
REMARK 4 1C2N COMPLIES WITH FORMAT V. 3.30, 13-JUL-11
REMARK 100
REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY BNL.
REMARK 210
REMARK 210 EXPERIMENTAL DETAILS
REMARK 210 EXPERIMENT TYPE : NMR
REMARK 210 TEMPERATURE (KELVIN) : 303
REMARK 210 PH : 6.0
REMARK 210 IONIC STRENGTH : 45 MM SODIUM PHOSPHATE
REMARK 210 PRESSURE : 1 ATM
REMARK 210 SAMPLE CONTENTS : 90% H2O/10% D2O
REMARK 210
REMARK 210 NMR EXPERIMENTS CONDUCTED : NOESY; HSQC-NOESY
REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ
REMARK 210 SPECTROMETER MODEL : AMX
REMARK 210 SPECTROMETER MANUFACTURER : BRUKER
REMARK 210
REMARK 210 STRUCTURE DETERMINATION.
REMARK 210 SOFTWARE USED : DISCOVER
REMARK 210 METHOD USED : SIMULATED ANNEALING
REMARK 210
REMARK 210 CONFORMERS, NUMBER CALCULATED : 25
REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20
REMARK 210 CONFORMERS, SELECTION CRITERIA : LEAST RESTRAINT VIOLATION
REMARK 210
REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 4
REMARK 210
REMARK 210 REMARK: THE STRUCTURE WAS DETERMINED USING HETERONUCLEAR NMR
REMARK 210 SPECTROSCOPY.
REMARK 215
REMARK 215 NMR STUDY
REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION
REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT
REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON
REMARK 215 THESE RECORDS ARE MEANINGLESS.
REMARK 300
REMARK 300 BIOMOLECULE: 1
REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM
REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN
REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON
REMARK 300 BURIED SURFACE AREA.
REMARK 350
REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN
REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE
REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS
REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND
REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN.
REMARK 350
REMARK 350 BIOMOLECULE: 1
REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC
REMARK 350 APPLY THE FOLLOWING TO CHAINS: A
REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000
REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000
REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000
REMARK 465
REMARK 465 MISSING RESIDUES
REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE
REMARK 465 EXPERIMENT. (RES=RESIDUE NAME; C=CHAIN IDENTIFIER;
REMARK 465 SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.)
REMARK 465 MODELS 1-20
REMARK 465 RES C SSSEQI
REMARK 465 MET A -20
REMARK 465 LYS A -19
REMARK 465 ILE A -18
REMARK 465 SER A -17
REMARK 465 LEU A -16
REMARK 465 THR A -15
REMARK 465 ALA A -14
REMARK 465 ALA A -13
REMARK 465 THR A -12
REMARK 465 VAL A -11
REMARK 465 ALA A -10
REMARK 465 ALA A -9
REMARK 465 LEU A -8
REMARK 465 VAL A -7
REMARK 465 LEU A -6
REMARK 465 ALA A -5
REMARK 465 ALA A -4
REMARK 465 PRO A -3
REMARK 465 ALA A -2
REMARK 465 PHE A -1
REMARK 465 ALA A 0
REMARK 500
REMARK 500 GEOMETRY AND STEREOCHEMISTRY
REMARK 500 SUBTOPIC: COVALENT BOND ANGLES
REMARK 500
REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES
REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE
REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN
REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE).
REMARK 500
REMARK 500 STANDARD TABLE:
REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1)
REMARK 500
REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999
REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996
REMARK 500
REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3
REMARK 500 4 VAL A 114 CA - CB - CG1 ANGL. DEV. = 10.7 DEGREES
REMARK 500
REMARK 500 REMARK: NULL
REMARK 500
REMARK 500 GEOMETRY AND STEREOCHEMISTRY
REMARK 500 SUBTOPIC: TORSION ANGLES
REMARK 500
REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS:
REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER;
REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE).
REMARK 500
REMARK 500 STANDARD TABLE:
REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2)
REMARK 500
REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI-
REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400
REMARK 500
REMARK 500 M RES CSSEQI PSI PHI
REMARK 500 1 ALA A 45 -123.54 36.57
REMARK 500 1 THR A 47 9.13 -160.18
REMARK 500 1 TYR A 53 -176.93 -69.83
REMARK 500 1 ASP A 78 62.63 -151.95
REMARK 500 1 GLU A 85 -70.46 -60.37
REMARK 500 1 LYS A 91 30.18 -80.96
REMARK 500 1 MET A 96 80.78 -68.48
REMARK 500 1 LEU A 100 112.49 -161.05
REMARK 500 1 ALA A 101 33.92 -79.20
REMARK 500 1 VAL A 115 82.73 -64.60
REMARK 500 2 THR A 47 22.94 -145.31
REMARK 500 2 PHE A 51 118.57 -161.31
REMARK 500 2 SER A 63 0.59 -69.56
REMARK 500 2 MET A 96 81.02 -68.26
REMARK 500 2 LYS A 102 139.45 89.30
REMARK 500 3 LYS A 14 5.01 -66.73
REMARK 500 3 PRO A 35 -173.73 -54.69
REMARK 500 3 LEU A 37 6.16 -60.02
REMARK 500 3 TYR A 38 102.44 -59.75
REMARK 500 3 VAL A 41 98.71 -65.06
REMARK 500 3 ALA A 45 -149.86 62.54
REMARK 500 3 THR A 47 21.02 -150.32
REMARK 500 3 MET A 96 78.90 -69.75
REMARK 500 3 ALA A 101 41.44 -80.55
REMARK 500 3 LYS A 102 178.87 179.71
REMARK 500 4 TYR A 38 87.27 -63.43
REMARK 500 4 ASP A 78 73.35 -158.02
REMARK 500 4 MET A 96 79.75 -67.97
REMARK 500 4 ALA A 101 53.32 -114.49
REMARK 500 4 LYS A 102 164.12 75.66
REMARK 500 4 VAL A 114 -81.41 -59.68
REMARK 500 4 VAL A 115 70.87 8.28
REMARK 500 5 ALA A 31 44.22 -84.28
REMARK 500 5 LYS A 32 57.45 13.79
REMARK 500 5 TYR A 38 87.15 -67.55
REMARK 500 5 THR A 44 70.40 -67.40
REMARK 500 5 ALA A 45 -144.91 56.53
REMARK 500 5 ASP A 78 56.79 -159.37
REMARK 500 5 LYS A 91 42.20 -79.53
REMARK 500 5 MET A 96 84.35 -64.96
REMARK 500 5 VAL A 115 94.07 -69.88
REMARK 500 6 ILE A 27 -60.18 -98.62
REMARK 500 6 LYS A 29 70.61 -68.62
REMARK 500 6 ALA A 45 -139.47 53.07
REMARK 500 6 TRP A 67 99.23 -61.01
REMARK 500 6 ASP A 78 49.16 -161.21
REMARK 500 6 MET A 96 82.63 -65.44
REMARK 500 6 ALA A 101 46.72 -79.38
REMARK 500 6 LYS A 102 -165.63 175.59
REMARK 500 6 VAL A 115 82.78 -69.07
REMARK 500
REMARK 500 THIS ENTRY HAS 153 RAMACHANDRAN OUTLIERS.
REMARK 500
REMARK 500 REMARK: NULL
REMARK 500
REMARK 500 GEOMETRY AND STEREOCHEMISTRY
REMARK 500 SUBTOPIC: PLANAR GROUPS
REMARK 500
REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL
REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE
REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN
REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS
REMARK 500 AN RMSD GREATER THAN THIS VALUE
REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER;
REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE).
REMARK 500
REMARK 500 M RES CSSEQI RMS TYPE
REMARK 500 1 ASP A 23 0.09 SIDE CHAIN
REMARK 500 1 TYR A 38 0.08 SIDE CHAIN
REMARK 500 1 TYR A 48 0.09 SIDE CHAIN
REMARK 500 1 PHE A 51 0.12 SIDE CHAIN
REMARK 500 1 TYR A 53 0.19 SIDE CHAIN
REMARK 500 1 PHE A 65 0.09 SIDE CHAIN
REMARK 500 2 GLU A 26 0.07 SIDE CHAIN
REMARK 500 2 TYR A 53 0.14 SIDE CHAIN
REMARK 500 2 ASP A 106 0.08 SIDE CHAIN
REMARK 500 3 ASP A 23 0.09 SIDE CHAIN
REMARK 500 3 TYR A 38 0.18 SIDE CHAIN
REMARK 500 3 TYR A 53 0.08 SIDE CHAIN
REMARK 500 3 GLU A 69 0.10 SIDE CHAIN
REMARK 500 4 PHE A 10 0.07 SIDE CHAIN
REMARK 500 4 ASP A 23 0.09 SIDE CHAIN
REMARK 500 4 GLU A 26 0.07 SIDE CHAIN
REMARK 500 4 TYR A 38 0.08 SIDE CHAIN
REMARK 500 4 TYR A 48 0.10 SIDE CHAIN
REMARK 500 4 PHE A 82 0.13 SIDE CHAIN
REMARK 500 5 ASP A 23 0.09 SIDE CHAIN
REMARK 500 5 TYR A 38 0.08 SIDE CHAIN
REMARK 500 5 TYR A 48 0.07 SIDE CHAIN
REMARK 500 5 GLU A 105 0.09 SIDE CHAIN
REMARK 500 6 TYR A 48 0.09 SIDE CHAIN
REMARK 500 6 TYR A 53 0.11 SIDE CHAIN
REMARK 500 6 PHE A 65 0.09 SIDE CHAIN
REMARK 500 7 TYR A 48 0.07 SIDE CHAIN
REMARK 500 7 PHE A 65 0.09 SIDE CHAIN
REMARK 500 7 PHE A 82 0.09 SIDE CHAIN
REMARK 500 8 ASP A 23 0.09 SIDE CHAIN
REMARK 500 8 PHE A 51 0.08 SIDE CHAIN
REMARK 500 9 TYR A 48 0.07 SIDE CHAIN
REMARK 500 10 TYR A 38 0.08 SIDE CHAIN
REMARK 500 10 ARG A 43 0.10 SIDE CHAIN
REMARK 500 10 TYR A 48 0.10 SIDE CHAIN
REMARK 500 11 ASP A 23 0.09 SIDE CHAIN
REMARK 500 11 TYR A 38 0.12 SIDE CHAIN
REMARK 500 11 TYR A 48 0.10 SIDE CHAIN
REMARK 500 11 PHE A 51 0.08 SIDE CHAIN
REMARK 500 11 GLU A 105 0.08 SIDE CHAIN
REMARK 500 12 ASP A 2 0.07 SIDE CHAIN
REMARK 500 12 TYR A 48 0.12 SIDE CHAIN
REMARK 500 12 PHE A 51 0.12 SIDE CHAIN
REMARK 500 12 TYR A 53 0.09 SIDE CHAIN
REMARK 500 12 ASP A 106 0.07 SIDE CHAIN
REMARK 500 13 PHE A 10 0.12 SIDE CHAIN
REMARK 500 13 ASP A 23 0.09 SIDE CHAIN
REMARK 500 13 TYR A 75 0.07 SIDE CHAIN
REMARK 500 13 ASP A 89 0.09 SIDE CHAIN
REMARK 500 14 ASP A 23 0.09 SIDE CHAIN
REMARK 500
REMARK 500 THIS ENTRY HAS 72 PLANE DEVIATIONS.
REMARK 500
REMARK 500 REMARK: NULL
REMARK 620
REMARK 620 METAL COORDINATION
REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER;
REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE):
REMARK 620
REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL
REMARK 620 1 HEC A 117 FE
REMARK 620 N RES CSSEQI ATOM
REMARK 620 1 HIS A 17 NE2
REMARK 620 2 HEC A 117 NA 87.0
REMARK 620 3 HEC A 117 NB 89.2 90.1
REMARK 620 4 HEC A 117 NC 92.9 179.8 90.1
REMARK 620 5 HEC A 117 ND 85.1 89.1 174.3 90.7
REMARK 620 6 MET A 96 SD 171.5 101.5 90.4 78.6 95.3
REMARK 620 N 1 2 3 4 5
REMARK 800
REMARK 800 SITE
REMARK 800 SITE_IDENTIFIER: AC1
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE HEC A 117
DBREF 1C2N A -20 116 UNP P00094 CYC2_RHOCA 1 137
SEQRES 1 A 137 MET LYS ILE SER LEU THR ALA ALA THR VAL ALA ALA LEU
SEQRES 2 A 137 VAL LEU ALA ALA PRO ALA PHE ALA GLY ASP ALA ALA LYS
SEQRES 3 A 137 GLY GLU LYS GLU PHE ASN LYS CYS LYS THR CYS HIS SER
SEQRES 4 A 137 ILE ILE ALA PRO ASP GLY THR GLU ILE VAL LYS GLY ALA
SEQRES 5 A 137 LYS THR GLY PRO ASN LEU TYR GLY VAL VAL GLY ARG THR
SEQRES 6 A 137 ALA GLY THR TYR PRO GLU PHE LYS TYR LYS ASP SER ILE
SEQRES 7 A 137 VAL ALA LEU GLY ALA SER GLY PHE ALA TRP THR GLU GLU
SEQRES 8 A 137 ASP ILE ALA THR TYR VAL LYS ASP PRO GLY ALA PHE LEU
SEQRES 9 A 137 LYS GLU LYS LEU ASP ASP LYS LYS ALA LYS THR GLY MET
SEQRES 10 A 137 ALA PHE LYS LEU ALA LYS GLY GLY GLU ASP VAL ALA ALA
SEQRES 11 A 137 TYR LEU ALA SER VAL VAL LYS
HET HEC A 117 75
HETNAM HEC HEME C
FORMUL 2 HEC C34 H34 FE N4 O4
HELIX 1 I ALA A 3 GLU A 9 1 7
HELIX 2 II ASP A 55 ALA A 62 1 8
HELIX 3 III GLU A 70 ASP A 78 1 9
HELIX 4 IV ALA A 81 ASP A 88 1 8
HELIX 5 V GLY A 104 VAL A 114 1 11
LINK FE HEC A 117 NE2 HIS A 17 1555 1555 2.00
LINK FE HEC A 117 SD MET A 96 1555 1555 2.36
LINK CAB HEC A 117 SG CYS A 13 1555 1555 1.82
LINK CAC HEC A 117 SG CYS A 16 1555 1555 1.81
SITE 1 AC1 20 LYS A 12 CYS A 13 CYS A 16 HIS A 17
SITE 2 AC1 20 THR A 33 PRO A 35 LEU A 37 ALA A 45
SITE 3 AC1 20 GLY A 46 TYR A 53 LYS A 54 ILE A 57
SITE 4 AC1 20 TRP A 67 TYR A 75 VAL A 76 THR A 94
SITE 5 AC1 20 GLY A 95 MET A 96 PHE A 98 VAL A 107
CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 1.000000 0.000000 0.000000 0.00000
SCALE2 0.000000 1.000000 0.000000 0.00000
SCALE3 0.000000 0.000000 1.000000 0.00000
MODEL 1
Complete list - r 25 2 Bytes