Header list of 1c06.pdb file
Complete list - v 29 2 Bytes
HEADER RIBOSOME 14-JUL-99 1C06
TITLE SOLUTION STRUCTURE OF RIBOSOMAL PROTEIN S4 DELTA 41, REFINED WITH
TITLE 2 DIPOLAR COUPLINGS (ENSEMBLE OF 16 STRUCTURES)
COMPND MOL_ID: 1;
COMPND 2 MOLECULE: RIBOSOMAL PROTEIN S4 DELTA 41;
COMPND 3 CHAIN: A;
COMPND 4 FRAGMENT: S4 DELTA 41 (S4 RESIDUES 42-200);
COMPND 5 ENGINEERED: YES
SOURCE MOL_ID: 1;
SOURCE 2 ORGANISM_SCIENTIFIC: GEOBACILLUS STEAROTHERMOPHILUS;
SOURCE 3 ORGANISM_TAXID: 1422;
SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3);
SOURCE 5 EXPRESSION_SYSTEM_TAXID: 469008;
SOURCE 6 EXPRESSION_SYSTEM_STRAIN: BL21 (DE3);
SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID;
SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PET13A
KEYWDS TWO SUBDOMAINS, UNIQUE TOPOLOGY, POSSIBLE HELIX-TURN HELIX MOTIF,
KEYWDS 2 RIBOSOME
EXPDTA SOLUTION NMR
NUMMDL 16
AUTHOR M.A.MARKUS,R.B.GERSTNER,D.E.DRAPER,D.A.TORCHIA
REVDAT 4 29-NOV-17 1C06 1 REMARK HELIX
REVDAT 3 24-FEB-09 1C06 1 VERSN
REVDAT 2 04-FEB-00 1C06 1 JRNL
REVDAT 1 29-SEP-99 1C06 0
JRNL AUTH M.A.MARKUS,R.B.GERSTNER,D.E.DRAPER,D.A.TORCHIA
JRNL TITL REFINING THE OVERALL STRUCTURE AND SUBDOMAIN ORIENTATION OF
JRNL TITL 2 RIBOSOMAL PROTEIN S4 DELTA41 WITH DIPOLAR COUPLINGS MEASURED
JRNL TITL 3 BY NMR IN UNIAXIAL LIQUID CRYSTALLINE PHASES.
JRNL REF J.MOL.BIOL. V. 292 375 1999
JRNL REFN ISSN 0022-2836
JRNL PMID 10493882
JRNL DOI 10.1006/JMBI.1999.3061
REMARK 1
REMARK 1 REFERENCE 1
REMARK 1 AUTH M.A.MARKUS,R.B.GERSTNER,D.E.DRAPER,D.A.TORCHIA
REMARK 1 TITL THE SOLUTION STRUCTURE OF RIBOSOMAL PROTEIN S4 DELTA 41
REMARK 1 TITL 2 REVEALS TWO SUBDOMAINS AND A POSITIVELY CHARGED SURFACE THAT
REMARK 1 TITL 3 MAY INTERACT WITH RNA
REMARK 1 REF EMBO J. V. 17 4559 1998
REMARK 1 REFN ISSN 0261-4189
REMARK 1 DOI 10.1093/EMBOJ/17.16.4559
REMARK 2
REMARK 2 RESOLUTION. NOT APPLICABLE.
REMARK 3
REMARK 3 REFINEMENT.
REMARK 3 PROGRAM : XWINNMR 2.5, X-PLOR 3.8, 4.0
REMARK 3 AUTHORS : BRUKER (XWINNMR), BRUNGER (X-PLOR)
REMARK 3
REMARK 3 OTHER REFINEMENT REMARKS:
REMARK 3 SUMMARY OF RESTRAINTS: 2170 NOE, 86 HYDROGEN BOND, 114 DIHEDRAL
REMARK 3 ANGLE, AND 101
REMARK 3 DIPOLAR COUPLINGS
REMARK 4
REMARK 4 1C06 COMPLIES WITH FORMAT V. 3.15, 01-DEC-08
REMARK 100
REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 15-JUL-99.
REMARK 100 THE DEPOSITION ID IS D_1000009342.
REMARK 210
REMARK 210 EXPERIMENTAL DETAILS
REMARK 210 EXPERIMENT TYPE : NMR
REMARK 210 TEMPERATURE (KELVIN) : 310; 310; 310
REMARK 210 PH : 5.4; 6.0; 6.5
REMARK 210 IONIC STRENGTH : 250 MM KCL; 80 MM KCL; 300 MM
REMARK 210 KCL
REMARK 210 PRESSURE : AMBIENT; AMBIENT; AMBIENT
REMARK 210 SAMPLE CONTENTS : 1.1 MM S4 DELTA 41, U-15N,13C;
REMARK 210 20 MM D4-ACETATE PH 5.4, 250 MM
REMARK 210 KCL, 0.1 MM SODIUM AZIDE; 0.8 MM
REMARK 210 S4 DELTA 41, U-15N; 20 MM D4-
REMARK 210 ACETATE PH 5.4, 250 MM KCL, 0.1
REMARK 210 MM SODIUM AZIDE; 0.45 MM S4
REMARK 210 DELTA 41, U-15N,13C; 20 MM D4-
REMARK 210 ACETATE PH 5.4, 250 MM KCL; 0.62
REMARK 210 MM S4 DELTA 41, 10% 13C; 20 MM
REMARK 210 D4-ACETATE PH 5.4, 250 MM KCL;
REMARK 210 0.10 MM S4 DELTA 41, U-15N; 7 MM
REMARK 210 D4-ACETATE PH 5.4, 7 MM KH2PO4
REMARK 210 PH 6.5, 80 MM KCL, 5% W/V DMPC:
REMARK 210 DHPC (3:1); 0.21 MM S4 DELTA 41,
REMARK 210 U-15N, 85% 2H; 15N,13C,1H
REMARK 210 METHIONINE; EPSILON-13C,1H
REMARK 210 TYROSINE; BETA,GAMMA,DELTA 2H
REMARK 210 PROLINE; 10 MM KH2PO4 PH 6.5,
REMARK 210 300 MM KCL, 0.2 MM SODIUM AZIDE,
REMARK 210 2.5 MG/ML PF1
REMARK 210
REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D_15N-SEPARATED_NOESY; 3D_13C
REMARK 210 -SEPARATED_NOESY; 4D_13C-
REMARK 210 SEPARATED_NOESY; HNHA; IPAP 15N
REMARK 210 HSQC
REMARK 210 SPECTROMETER FIELD STRENGTH : 750 MHZ; 500 MHZ
REMARK 210 SPECTROMETER MODEL : DMX
REMARK 210 SPECTROMETER MANUFACTURER : BRUKER
REMARK 210
REMARK 210 STRUCTURE DETERMINATION.
REMARK 210 SOFTWARE USED : NMRPIPE 1.7, PIPP 4.2.8
REMARK 210 METHOD USED : HYBRID DGSA PROTOCOL WITHOUT THE
REMARK 210 DIPOLAR COUPLING RESTRAINTS
REMARK 210 FOLLOWED BY ADDITIONAL SA WITH
REMARK 210 THE DIPOLAR COUPLING RESTRAINTS
REMARK 210 ADDED
REMARK 210
REMARK 210 CONFORMERS, NUMBER CALCULATED : 50
REMARK 210 CONFORMERS, NUMBER SUBMITTED : 16
REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST
REMARK 210 ENERGY
REMARK 210
REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1
REMARK 210
REMARK 210 REMARK:
REMARK 210 THESE STRUCTURES WERE DETERMINED WITH NOE RESTRAINTS FROM
REMARK 210 MULTIDIMENSIONAL
REMARK 210 HETERONUCLEAR EXPERIMENTS, DIHEDRAL ANGLE RESTRAINTS BASED ON
REMARK 210 MEASUREMENTS OF
REMARK 210 SCALAR COUPLING CONSTANTS, AND DIPOLAR COUPLING RESTRAINTS
REMARK 210 MEASURED ON SAMPLES
REMARK 210 IN PARTIALLY ALIGNED PHASES. THE STRUCTURES ARE ARRANGED IN ORDER
REMARK 210 FROM LOWEST
REMARK 210 TO HIGHEST X-PLOR ENERGY.
REMARK 215
REMARK 215 NMR STUDY
REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION
REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT
REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON
REMARK 215 THESE RECORDS ARE MEANINGLESS.
REMARK 300
REMARK 300 BIOMOLECULE: 1
REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM
REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN
REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON
REMARK 300 BURIED SURFACE AREA.
REMARK 350
REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN
REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE
REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS
REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND
REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN.
REMARK 350
REMARK 350 BIOMOLECULE: 1
REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC
REMARK 350 APPLY THE FOLLOWING TO CHAINS: A
REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000
REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000
REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000
REMARK 900
REMARK 900 RELATED ENTRIES
REMARK 900 RELATED ID: 1C05 RELATED DB: PDB
REMARK 900 MINIMIZED AVERAGE STRUCTURE
DBREF 1C06 A 1 159 UNP P81288 RS4_BACST 41 198
SEQRES 1 A 159 MET LYS LEU SER GLU TYR GLY LEU GLN LEU GLN GLU LYS
SEQRES 2 A 159 GLN LYS LEU ARG HIS MET TYR GLY VAL ASN GLU ARG GLN
SEQRES 3 A 159 PHE ARG LYS THR PHE GLU GLU ALA GLY LYS MET PRO GLY
SEQRES 4 A 159 LYS HIS GLY GLU ASN PHE MET ILE LEU LEU GLU SER ARG
SEQRES 5 A 159 LEU ASP ASN LEU VAL TYR ARG LEU GLY LEU ALA ARG THR
SEQRES 6 A 159 ARG ARG GLN ALA ARG GLN LEU VAL THR HIS GLY HIS ILE
SEQRES 7 A 159 LEU VAL ASP GLY SER ARG VAL ASN ILE PRO SER TYR ARG
SEQRES 8 A 159 VAL LYS PRO GLY GLN THR ILE ALA VAL ARG GLU LYS SER
SEQRES 9 A 159 ARG ASN LEU GLN VAL ILE LYS GLU ALA LEU GLU ALA ASN
SEQRES 10 A 159 ASN TYR ILE PRO ASP TYR LEU SER PHE ASP PRO GLU LYS
SEQRES 11 A 159 MET GLU GLY THR TYR THR ARG LEU PRO GLU ARG SER GLU
SEQRES 12 A 159 LEU PRO ALA GLU ILE ASN GLU ALA LEU ILE VAL GLU PHE
SEQRES 13 A 159 TYR SER ARG
HELIX 1 1 SER A 4 MET A 19 1 16
HELIX 2 2 ASN A 23 GLY A 35 1 13
HELIX 3 3 LYS A 40 ARG A 52 1 13
HELIX 4 4 ARG A 52 LEU A 60 1 9
HELIX 5 5 THR A 65 HIS A 75 1 11
HELIX 6 6 LEU A 107 ALA A 116 1 10
HELIX 7 7 GLU A 150 ARG A 159 1 10
SHEET 1 A 5 SER A 83 ARG A 84 0
SHEET 2 A 5 ILE A 78 VAL A 80 -1 N VAL A 80 O SER A 83
SHEET 3 A 5 THR A 97 VAL A 100 -1 O ALA A 99 N LEU A 79
SHEET 4 A 5 GLU A 132 TYR A 135 -1 N GLY A 133 O ILE A 98
SHEET 5 A 5 LEU A 124 ASP A 127 -1 O SER A 125 N THR A 134
CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 1.000000 0.000000 0.000000 0.00000
SCALE2 0.000000 1.000000 0.000000 0.00000
SCALE3 0.000000 0.000000 1.000000 0.00000
MODEL 1
Complete list - v 29 2 Bytes