Header list of 1c01.pdb file
Complete list - b 16 2 Bytes
HEADER ANTIMICROBIAL PROTEIN 13-JUL-99 1C01
TITLE SOLUTION STRUCTURE OF MIAMP1, A PLANT ANTIMICROBIAL PROTEIN
COMPND MOL_ID: 1;
COMPND 2 MOLECULE: ANTIMICROBIAL PEPTIDE 1;
COMPND 3 CHAIN: A
SOURCE MOL_ID: 1;
SOURCE 2 ORGANISM_SCIENTIFIC: MACADAMIA INTEGRIFOLIA;
SOURCE 3 ORGANISM_TAXID: 60698;
SOURCE 4 ORGAN: NUT KERNEL
KEYWDS GREEK KEY, BETA-BARREL, ANTIMICROBIAL PROTEIN
EXPDTA SOLUTION NMR
NUMMDL 20
AUTHOR A.M.MCMANUS,K.J.NIELSEN,J.P.MARCUS,S.J.HARRISON,J.L.GREEN,
AUTHOR 2 J.M.MANNERS,D.J.CRAIK
REVDAT 3 16-FEB-22 1C01 1 REMARK
REVDAT 2 24-FEB-09 1C01 1 VERSN
REVDAT 1 19-JUL-00 1C01 0
JRNL AUTH A.M.MCMANUS,K.J.NIELSEN,J.P.MARCUS,S.J.HARRISON,J.L.GREEN,
JRNL AUTH 2 J.M.MANNERS,D.J.CRAIK
JRNL TITL MIAMP1, A NOVEL PROTEIN FROM MACADAMIA INTEGRIFOLIA ADOPTS A
JRNL TITL 2 GREEK KEY BETA-BARREL FOLD UNIQUE AMONGST PLANT
JRNL TITL 3 ANTIMICROBIAL PROTEINS.
JRNL REF J.MOL.BIOL. V. 293 629 1999
JRNL REFN ISSN 0022-2836
JRNL PMID 10543955
JRNL DOI 10.1006/JMBI.1999.3163
REMARK 2
REMARK 2 RESOLUTION. NOT APPLICABLE.
REMARK 3
REMARK 3 REFINEMENT.
REMARK 3 PROGRAM : XWINNMR 2.1, X-PLOR 3.1
REMARK 3 AUTHORS : BRUKER (XWINNMR), BRUNGER (X-PLOR)
REMARK 3
REMARK 3 OTHER REFINEMENT REMARKS:
REMARK 3 THE STRUCTURES WERE CALCULATED FROM 1571 DISTANCE RESTRAINTS, 31
REMARK 3 HYDROGEN BOND
REMARK 3 RESTRAINTS AND 43 DIHEDRAL ANGLE RESTRAINTS
REMARK 4
REMARK 4 1C01 COMPLIES WITH FORMAT V. 3.15, 01-DEC-08
REMARK 100
REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 14-JUL-99.
REMARK 100 THE DEPOSITION ID IS D_1000009337.
REMARK 210
REMARK 210 EXPERIMENTAL DETAILS
REMARK 210 EXPERIMENT TYPE : NMR
REMARK 210 TEMPERATURE (KELVIN) : 308; 283
REMARK 210 PH : 5.0; 5.0
REMARK 210 IONIC STRENGTH : 1.5 MM; 1.5 MM
REMARK 210 PRESSURE : 11 ATM; 11 ATM
REMARK 210 SAMPLE CONTENTS : 1.5 MM ANTIMICROBIAL PROTEIN;
REMARK 210 90% H2O, 10% D2O; 1.5 MM
REMARK 210 ANTIMICROBIAL PROTEIN U-15N; 90%
REMARK 210 H2O, 10% D2O
REMARK 210
REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D NOESY; DQF-COSY; 1H-15N HSQC
REMARK 210 SPECTROMETER FIELD STRENGTH : 750 MHZ
REMARK 210 SPECTROMETER MODEL : DMX
REMARK 210 SPECTROMETER MANUFACTURER : BRUKER
REMARK 210
REMARK 210 STRUCTURE DETERMINATION.
REMARK 210 SOFTWARE USED : X-EASY 1.3.7, X-PLOR 3.1
REMARK 210 METHOD USED : HIGH TEMPERATURE MOLECULAR
REMARK 210 DYNAMICS/SIMULATED ANNEALING
REMARK 210
REMARK 210 CONFORMERS, NUMBER CALCULATED : 50
REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20
REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST
REMARK 210 ENERGY
REMARK 210
REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 8
REMARK 210
REMARK 210 REMARK:
REMARK 210 THIS STRUCTURE WAS DETERMINED USING STANDARD 2D HOMONUCLEAR AND
REMARK 210 HETERONUCLEAR
REMARK 210 TECHNIQUES
REMARK 215
REMARK 215 NMR STUDY
REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION
REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT
REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON
REMARK 215 THESE RECORDS ARE MEANINGLESS.
REMARK 300
REMARK 300 BIOMOLECULE: 1
REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM
REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN
REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON
REMARK 300 BURIED SURFACE AREA.
REMARK 350
REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN
REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE
REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS
REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND
REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN.
REMARK 350
REMARK 350 BIOMOLECULE: 1
REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC
REMARK 350 APPLY THE FOLLOWING TO CHAINS: A
REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000
REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000
REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000
REMARK 500
REMARK 500 GEOMETRY AND STEREOCHEMISTRY
REMARK 500 SUBTOPIC: COVALENT BOND ANGLES
REMARK 500
REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES
REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE
REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN
REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE).
REMARK 500
REMARK 500 STANDARD TABLE:
REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1)
REMARK 500
REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999
REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996
REMARK 500
REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3
REMARK 500 1 TRP A 6 CD1 - NE1 - CE2 ANGL. DEV. = 7.1 DEGREES
REMARK 500 1 TRP A 69 CD1 - NE1 - CE2 ANGL. DEV. = 7.3 DEGREES
REMARK 500 1 TRP A 69 NE1 - CE2 - CZ2 ANGL. DEV. = 7.2 DEGREES
REMARK 500 2 TRP A 6 CD1 - NE1 - CE2 ANGL. DEV. = 7.1 DEGREES
REMARK 500 2 TRP A 69 CG - CD1 - NE1 ANGL. DEV. = -6.0 DEGREES
REMARK 500 2 TRP A 69 CD1 - NE1 - CE2 ANGL. DEV. = 7.3 DEGREES
REMARK 500 2 TRP A 69 NE1 - CE2 - CZ2 ANGL. DEV. = 7.3 DEGREES
REMARK 500 3 TRP A 6 CD1 - NE1 - CE2 ANGL. DEV. = 7.2 DEGREES
REMARK 500 3 TRP A 6 NE1 - CE2 - CZ2 ANGL. DEV. = 7.4 DEGREES
REMARK 500 3 TRP A 69 CD1 - NE1 - CE2 ANGL. DEV. = 7.3 DEGREES
REMARK 500 3 TRP A 69 NE1 - CE2 - CZ2 ANGL. DEV. = 7.1 DEGREES
REMARK 500 4 TRP A 6 CD1 - NE1 - CE2 ANGL. DEV. = 7.0 DEGREES
REMARK 500 4 TRP A 69 CD1 - NE1 - CE2 ANGL. DEV. = 7.5 DEGREES
REMARK 500 5 TRP A 6 CD1 - NE1 - CE2 ANGL. DEV. = 7.0 DEGREES
REMARK 500 5 TRP A 6 NE1 - CE2 - CZ2 ANGL. DEV. = 6.8 DEGREES
REMARK 500 5 TRP A 69 CD1 - NE1 - CE2 ANGL. DEV. = 7.2 DEGREES
REMARK 500 6 TRP A 6 CD1 - NE1 - CE2 ANGL. DEV. = 7.0 DEGREES
REMARK 500 6 TRP A 69 CD1 - NE1 - CE2 ANGL. DEV. = 7.5 DEGREES
REMARK 500 6 TRP A 69 NE1 - CE2 - CZ2 ANGL. DEV. = 6.6 DEGREES
REMARK 500 7 TRP A 6 CD1 - NE1 - CE2 ANGL. DEV. = 7.1 DEGREES
REMARK 500 7 TRP A 69 CD1 - NE1 - CE2 ANGL. DEV. = 7.5 DEGREES
REMARK 500 8 TRP A 6 CD1 - NE1 - CE2 ANGL. DEV. = 7.3 DEGREES
REMARK 500 8 TRP A 6 NE1 - CE2 - CZ2 ANGL. DEV. = 7.2 DEGREES
REMARK 500 8 CYS A 49 CA - CB - SG ANGL. DEV. = 7.0 DEGREES
REMARK 500 8 TRP A 69 CD1 - NE1 - CE2 ANGL. DEV. = 7.3 DEGREES
REMARK 500 9 TRP A 6 CD1 - NE1 - CE2 ANGL. DEV. = 7.1 DEGREES
REMARK 500 9 TRP A 69 CG - CD1 - NE1 ANGL. DEV. = -6.0 DEGREES
REMARK 500 9 TRP A 69 CD1 - NE1 - CE2 ANGL. DEV. = 7.4 DEGREES
REMARK 500 9 TRP A 69 NE1 - CE2 - CZ2 ANGL. DEV. = 6.9 DEGREES
REMARK 500 10 TRP A 6 CD1 - NE1 - CE2 ANGL. DEV. = 7.3 DEGREES
REMARK 500 10 TRP A 6 NE1 - CE2 - CZ2 ANGL. DEV. = 6.7 DEGREES
REMARK 500 10 CYS A 11 CA - CB - SG ANGL. DEV. = 8.8 DEGREES
REMARK 500 10 TRP A 69 CD1 - NE1 - CE2 ANGL. DEV. = 7.3 DEGREES
REMARK 500 10 TRP A 69 NE1 - CE2 - CZ2 ANGL. DEV. = 6.7 DEGREES
REMARK 500 11 TRP A 6 CD1 - NE1 - CE2 ANGL. DEV. = 7.2 DEGREES
REMARK 500 11 TRP A 69 CD1 - NE1 - CE2 ANGL. DEV. = 7.1 DEGREES
REMARK 500 12 TRP A 6 CD1 - NE1 - CE2 ANGL. DEV. = 7.2 DEGREES
REMARK 500 12 CYS A 11 CA - CB - SG ANGL. DEV. = 7.0 DEGREES
REMARK 500 12 TRP A 69 CD1 - NE1 - CE2 ANGL. DEV. = 7.3 DEGREES
REMARK 500 12 TRP A 69 NE1 - CE2 - CZ2 ANGL. DEV. = 6.9 DEGREES
REMARK 500 13 TRP A 6 CD1 - NE1 - CE2 ANGL. DEV. = 7.1 DEGREES
REMARK 500 13 TRP A 6 NE1 - CE2 - CZ2 ANGL. DEV. = 6.8 DEGREES
REMARK 500 13 TRP A 69 CD1 - NE1 - CE2 ANGL. DEV. = 7.4 DEGREES
REMARK 500 13 TRP A 69 NE1 - CE2 - CZ2 ANGL. DEV. = 7.0 DEGREES
REMARK 500 14 TRP A 6 CD1 - NE1 - CE2 ANGL. DEV. = 7.2 DEGREES
REMARK 500 14 TRP A 6 NE1 - CE2 - CZ2 ANGL. DEV. = 6.8 DEGREES
REMARK 500 14 TRP A 69 CD1 - NE1 - CE2 ANGL. DEV. = 7.4 DEGREES
REMARK 500 15 TRP A 6 CD1 - NE1 - CE2 ANGL. DEV. = 7.1 DEGREES
REMARK 500 15 TRP A 69 CG - CD1 - NE1 ANGL. DEV. = -6.0 DEGREES
REMARK 500 15 TRP A 69 CD1 - NE1 - CE2 ANGL. DEV. = 7.3 DEGREES
REMARK 500
REMARK 500 THIS ENTRY HAS 67 ANGLE DEVIATIONS.
REMARK 500
REMARK 500 REMARK: NULL
REMARK 500
REMARK 500 GEOMETRY AND STEREOCHEMISTRY
REMARK 500 SUBTOPIC: TORSION ANGLES
REMARK 500
REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS:
REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER;
REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE).
REMARK 500
REMARK 500 STANDARD TABLE:
REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2)
REMARK 500
REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI-
REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400
REMARK 500
REMARK 500 M RES CSSEQI PSI PHI
REMARK 500 1 CYS A 11 57.53 -96.87
REMARK 500 1 ASN A 13 -122.64 -173.53
REMARK 500 1 THR A 37 73.39 -174.82
REMARK 500 1 ALA A 47 150.58 -43.94
REMARK 500 1 CYS A 49 44.66 39.03
REMARK 500 1 SER A 50 37.70 -86.07
REMARK 500 1 HIS A 54 -59.00 -142.83
REMARK 500 2 CYS A 11 41.97 -93.07
REMARK 500 2 ASN A 12 -128.32 -124.41
REMARK 500 2 ASN A 13 -142.05 38.30
REMARK 500 2 GLN A 28 99.68 -51.43
REMARK 500 2 THR A 37 -35.26 -140.08
REMARK 500 2 CYS A 49 22.29 44.31
REMARK 500 2 SER A 50 45.51 -90.55
REMARK 500 2 PHE A 67 -146.17 -111.04
REMARK 500 2 GLN A 75 80.34 -61.61
REMARK 500 3 CYS A 11 48.23 -89.65
REMARK 500 3 ASN A 13 -146.47 171.71
REMARK 500 3 TYR A 18 78.70 -110.15
REMARK 500 3 LYS A 29 40.00 -80.56
REMARK 500 3 THR A 37 52.49 -167.42
REMARK 500 3 SER A 50 40.79 -83.93
REMARK 500 3 HIS A 54 -48.85 -146.59
REMARK 500 3 PHE A 67 -135.63 -123.49
REMARK 500 4 CYS A 11 44.83 -94.31
REMARK 500 4 ASN A 12 -129.30 -123.21
REMARK 500 4 ASN A 13 -144.31 38.20
REMARK 500 4 GLU A 16 118.51 -161.64
REMARK 500 4 THR A 37 -20.05 -168.48
REMARK 500 4 HIS A 54 -69.55 -139.30
REMARK 500 4 SER A 60 112.33 -38.05
REMARK 500 5 CYS A 11 53.40 -111.99
REMARK 500 5 ASN A 13 -144.72 178.31
REMARK 500 5 HIS A 27 14.87 -142.39
REMARK 500 5 LYS A 29 59.03 -90.10
REMARK 500 5 THR A 37 -39.67 -146.28
REMARK 500 5 SER A 50 34.73 -81.59
REMARK 500 5 ALA A 53 -169.08 -72.21
REMARK 500 5 HIS A 54 -59.41 -153.93
REMARK 500 5 SER A 60 117.08 -37.72
REMARK 500 5 PHE A 67 -169.87 -161.36
REMARK 500 6 CYS A 11 50.42 -93.30
REMARK 500 6 ASN A 12 -126.97 -134.64
REMARK 500 6 ASN A 13 -141.88 37.76
REMARK 500 6 THR A 37 66.68 -152.35
REMARK 500 6 CYS A 64 10.06 -147.39
REMARK 500 7 CYS A 11 54.98 -96.06
REMARK 500 7 ASN A 13 -150.29 -178.46
REMARK 500 7 SER A 59 127.25 -175.51
REMARK 500 7 SER A 60 111.19 -30.64
REMARK 500
REMARK 500 THIS ENTRY HAS 182 RAMACHANDRAN OUTLIERS.
REMARK 500
REMARK 500 REMARK: NULL
REMARK 500
REMARK 500 GEOMETRY AND STEREOCHEMISTRY
REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS
REMARK 500
REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH
REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED
REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND
REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES.
REMARK 500 MODEL OMEGA
REMARK 500 ASN A 65 PRO A 66 11 144.69
REMARK 500
REMARK 500 REMARK: NULL
DBREF 1C01 A 1 76 UNP P80915 AMP1_MACIN 27 102
SEQRES 1 A 76 SER ALA PHE THR VAL TRP SER GLY PRO GLY CYS ASN ASN
SEQRES 2 A 76 ARG ALA GLU ARG TYR SER LYS CYS GLY CYS SER ALA ILE
SEQRES 3 A 76 HIS GLN LYS GLY GLY TYR ASP PHE SER TYR THR GLY GLN
SEQRES 4 A 76 THR ALA ALA LEU TYR ASN GLN ALA GLY CYS SER GLY VAL
SEQRES 5 A 76 ALA HIS THR ARG PHE GLY SER SER ALA ARG ALA CYS ASN
SEQRES 6 A 76 PRO PHE GLY TRP LYS SER ILE PHE ILE GLN CYS
HELIX 1 1 GLN A 46 SER A 50 5 5
SHEET 1 A 3 GLU A 16 TYR A 18 0
SHEET 2 A 3 ALA A 2 VAL A 5 -1 O PHE A 3 N TYR A 18
SHEET 3 A 3 TYR A 32 SER A 35 -1 N ASP A 33 O THR A 4
SHEET 1 B 4 GLY A 22 ALA A 25 0
SHEET 2 B 4 SER A 71 ILE A 74 -1 N ILE A 72 O SER A 24
SHEET 3 B 4 ALA A 41 TYR A 44 -1 O ALA A 42 N PHE A 73
SHEET 4 B 4 ALA A 53 PHE A 57 -1 N HIS A 54 O LEU A 43
SSBOND 1 CYS A 11 CYS A 64 1555 1555 2.02
SSBOND 2 CYS A 21 CYS A 76 1555 1555 2.02
SSBOND 3 CYS A 23 CYS A 49 1555 1555 2.02
CISPEP 1 GLY A 8 PRO A 9 1 8.00
CISPEP 2 GLY A 8 PRO A 9 2 17.92
CISPEP 3 GLY A 8 PRO A 9 3 9.98
CISPEP 4 GLY A 8 PRO A 9 4 17.61
CISPEP 5 GLY A 8 PRO A 9 5 8.71
CISPEP 6 GLY A 8 PRO A 9 6 13.03
CISPEP 7 GLY A 8 PRO A 9 7 7.68
CISPEP 8 GLY A 8 PRO A 9 8 19.97
CISPEP 9 GLY A 8 PRO A 9 9 19.35
CISPEP 10 GLY A 8 PRO A 9 10 13.95
CISPEP 11 GLY A 8 PRO A 9 11 12.43
CISPEP 12 GLY A 8 PRO A 9 12 16.91
CISPEP 13 GLY A 8 PRO A 9 13 18.09
CISPEP 14 GLY A 8 PRO A 9 14 25.62
CISPEP 15 GLY A 8 PRO A 9 15 18.29
CISPEP 16 GLY A 8 PRO A 9 16 20.71
CISPEP 17 GLY A 8 PRO A 9 17 12.37
CISPEP 18 GLY A 8 PRO A 9 18 14.77
CISPEP 19 GLY A 8 PRO A 9 19 17.00
CISPEP 20 GLY A 8 PRO A 9 20 11.15
CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 1.000000 0.000000 0.000000 0.00000
SCALE2 0.000000 1.000000 0.000000 0.00000
SCALE3 0.000000 0.000000 1.000000 0.00000
MODEL 1
Complete list - b 16 2 Bytes