Header list of 1bwg.pdb file
Complete list - 16 20 Bytes
HEADER DNA 22-SEP-98 1BWG
TITLE DNA TRIPLEX WITH 5' AND 3' JUNCTIONS, NMR, 10 STRUCTURES
COMPND MOL_ID: 1;
COMPND 2 MOLECULE: DNA (5'-D(*GP*AP*CP*TP*GP*AP*GP*AP*GP*AP*CP*GP*TP*A)-3');
COMPND 3 CHAIN: A;
COMPND 4 ENGINEERED: YES;
COMPND 5 MOL_ID: 2;
COMPND 6 MOLECULE: DNA (5'-D(*TP*AP*CP*GP*TP*CP*TP*CP*TP*CP*AP*GP*TP*C)-3');
COMPND 7 CHAIN: B;
COMPND 8 ENGINEERED: YES;
COMPND 9 MOL_ID: 3;
COMPND 10 MOLECULE: DNA (5'-D(*CP*TP*CP*TP*CP*T)-3');
COMPND 11 CHAIN: C;
COMPND 12 ENGINEERED: YES
SOURCE MOL_ID: 1;
SOURCE 2 SYNTHETIC: YES;
SOURCE 3 MOL_ID: 2;
SOURCE 4 SYNTHETIC: YES;
SOURCE 5 MOL_ID: 3;
SOURCE 6 SYNTHETIC: YES
KEYWDS DEOXYRIBONUCLEIC ACID, DNA TRIPLEX, TRIPLEX-DUPLEX JUNCTIONS, DNA
EXPDTA SOLUTION NMR
NUMMDL 10
AUTHOR J.L.ASENSIO,T.BROWN,A.N.LANE
REVDAT 3 16-FEB-22 1BWG 1 REMARK
REVDAT 2 24-FEB-09 1BWG 1 VERSN
REVDAT 1 23-MAR-99 1BWG 0
JRNL AUTH J.L.ASENSIO,T.BROWN,A.N.LANE
JRNL TITL SOLUTION CONFORMATION OF A PARALLEL DNA TRIPLE HELIX WITH 5'
JRNL TITL 2 AND 3' TRIPLEX-DUPLEX JUNCTIONS.
JRNL REF STRUCTURE FOLD.DES. V. 7 1 1999
JRNL REFN ISSN 0969-2126
JRNL PMID 10368268
JRNL DOI 10.1016/S0969-2126(99)80004-5
REMARK 1
REMARK 1 REFERENCE 1
REMARK 1 AUTH J.P.BARTLEY,T.BROWN,A.N.LANE
REMARK 1 TITL SOLUTION CONFORMATION OF AN INTRAMOLECULAR DNA TRIPLEX
REMARK 1 TITL 2 CONTAINING A NONNUCLEOTIDE LINKER: COMPARISON WITH THE DNA
REMARK 1 TITL 3 DUPLEX
REMARK 1 REF BIOCHEMISTRY V. 36 14502 1997
REMARK 1 REFN ISSN 0006-2960
REMARK 2
REMARK 2 RESOLUTION. NOT APPLICABLE.
REMARK 3
REMARK 3 REFINEMENT.
REMARK 3 PROGRAM : DISCOVER
REMARK 3 AUTHORS : BIOSYM
REMARK 3
REMARK 3 OTHER REFINEMENT REMARKS: RESTRAINED MD
REMARK 4
REMARK 4 1BWG COMPLIES WITH FORMAT V. 3.15, 01-DEC-08
REMARK 100
REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY BNL.
REMARK 100 THE DEPOSITION ID IS D_1000172122.
REMARK 210
REMARK 210 EXPERIMENTAL DETAILS
REMARK 210 EXPERIMENT TYPE : NMR
REMARK 210 TEMPERATURE (KELVIN) : 313
REMARK 210 PH : 5
REMARK 210 IONIC STRENGTH : 0.1
REMARK 210 PRESSURE : 1 ATM
REMARK 210 SAMPLE CONTENTS : NULL
REMARK 210
REMARK 210 NMR EXPERIMENTS CONDUCTED : NOESY DQF-COSY; ROESY; 13C-HSQC
REMARK 210 SPECTROMETER FIELD STRENGTH : 500 MHZ; 600 MHZ
REMARK 210 SPECTROMETER MODEL : UNITYPLUS
REMARK 210 SPECTROMETER MANUFACTURER : VARIAN
REMARK 210
REMARK 210 STRUCTURE DETERMINATION.
REMARK 210 SOFTWARE USED : DISCOVER
REMARK 210 METHOD USED : RESTRAINED MOLECULAR DYNAMICS
REMARK 210
REMARK 210 CONFORMERS, NUMBER CALCULATED : 30
REMARK 210 CONFORMERS, NUMBER SUBMITTED : 10
REMARK 210 CONFORMERS, SELECTION CRITERIA : LEAST RESTRAINT VIOLATIONS
REMARK 210
REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : NULL
REMARK 210
REMARK 210 REMARK: THE STRUCTURES WERE DETERMINED FROM NOE AND J-COUPLING
REMARK 210 DATA ON TWO INTRAMOLECULAR DNA TRIPLE HELICES CONTAINING
REMARK 210 IDENTICAL CORE SEGMENTS. THE RESTRAINTS WERE GENERATED FOR THE
REMARK 210 SUPERMOLECULE CONTAINING THE CORE TRIPLEX REGION AND THE 5' AND
REMARK 210 3' DUPLEX EXTEN SIONS.
REMARK 215
REMARK 215 NMR STUDY
REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION
REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT
REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON
REMARK 215 THESE RECORDS ARE MEANINGLESS.
REMARK 300
REMARK 300 BIOMOLECULE: 1
REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM
REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN
REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON
REMARK 300 BURIED SURFACE AREA.
REMARK 350
REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN
REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE
REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS
REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND
REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN.
REMARK 350
REMARK 350 BIOMOLECULE: 1
REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC
REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C
REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000
REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000
REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000
REMARK 500
REMARK 500 GEOMETRY AND STEREOCHEMISTRY
REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS
REMARK 500
REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES
REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE
REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN
REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE).
REMARK 500
REMARK 500 STANDARD TABLE:
REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3)
REMARK 500
REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999
REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996
REMARK 500
REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION
REMARK 500 1 DC C 3 N3 DC C 3 C4 0.045
REMARK 500 1 DC C 5 N3 DC C 5 C4 0.043
REMARK 500 2 DC C 1 N3 DC C 1 C4 0.042
REMARK 500 2 DC C 3 N3 DC C 3 C4 0.044
REMARK 500 2 DC C 5 N3 DC C 5 C4 0.043
REMARK 500 3 DC C 1 N3 DC C 1 C4 0.042
REMARK 500 3 DC C 3 N3 DC C 3 C4 0.043
REMARK 500 3 DC C 5 N3 DC C 5 C4 0.043
REMARK 500 4 DC C 1 N3 DC C 1 C4 0.043
REMARK 500 4 DC C 3 N3 DC C 3 C4 0.043
REMARK 500 4 DC C 5 N3 DC C 5 C4 0.043
REMARK 500 5 DC C 3 N3 DC C 3 C4 0.045
REMARK 500 5 DC C 5 N3 DC C 5 C4 0.044
REMARK 500 6 DC C 1 N3 DC C 1 C4 0.042
REMARK 500 6 DC C 3 N3 DC C 3 C4 0.044
REMARK 500 6 DC C 5 N3 DC C 5 C4 0.044
REMARK 500 7 DC C 3 N3 DC C 3 C4 0.045
REMARK 500 7 DC C 5 N3 DC C 5 C4 0.042
REMARK 500 8 DC C 1 N3 DC C 1 C4 0.042
REMARK 500 8 DC C 3 N3 DC C 3 C4 0.044
REMARK 500 8 DC C 5 N3 DC C 5 C4 0.043
REMARK 500 9 DC C 3 N3 DC C 3 C4 0.045
REMARK 500 9 DC C 5 N3 DC C 5 C4 0.042
REMARK 500 10 DC C 3 N3 DC C 3 C4 0.045
REMARK 500 10 DC C 5 N3 DC C 5 C4 0.042
REMARK 500
REMARK 500 REMARK: NULL
REMARK 500
REMARK 500 GEOMETRY AND STEREOCHEMISTRY
REMARK 500 SUBTOPIC: COVALENT BOND ANGLES
REMARK 500
REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES
REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE
REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN
REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE).
REMARK 500
REMARK 500 STANDARD TABLE:
REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1)
REMARK 500
REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999
REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996
REMARK 500
REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3
REMARK 500 1 DG A 1 O4' - C1' - N9 ANGL. DEV. = 1.8 DEGREES
REMARK 500 1 DA A 2 O4' - C1' - N9 ANGL. DEV. = 1.9 DEGREES
REMARK 500 1 DT A 4 C4 - C5 - C6 ANGL. DEV. = 3.8 DEGREES
REMARK 500 1 DG A 7 O4' - C1' - N9 ANGL. DEV. = 3.9 DEGREES
REMARK 500 1 DG A 9 O4' - C1' - N9 ANGL. DEV. = 2.1 DEGREES
REMARK 500 1 DA A 10 O4' - C1' - N9 ANGL. DEV. = 5.3 DEGREES
REMARK 500 1 DC A 11 O4' - C1' - N1 ANGL. DEV. = 2.4 DEGREES
REMARK 500 1 DT A 13 O4' - C1' - N1 ANGL. DEV. = 1.9 DEGREES
REMARK 500 1 DA A 14 O4' - C1' - N9 ANGL. DEV. = 3.3 DEGREES
REMARK 500 1 DT B 1 O4' - C1' - N1 ANGL. DEV. = 8.1 DEGREES
REMARK 500 1 DC B 3 O4' - C1' - N1 ANGL. DEV. = 3.9 DEGREES
REMARK 500 1 DG B 4 O4' - C1' - N9 ANGL. DEV. = 3.1 DEGREES
REMARK 500 1 DC B 6 O4' - C1' - N1 ANGL. DEV. = 3.0 DEGREES
REMARK 500 1 DT B 7 O4' - C1' - N1 ANGL. DEV. = 2.0 DEGREES
REMARK 500 1 DC B 8 O4' - C1' - N1 ANGL. DEV. = 2.1 DEGREES
REMARK 500 1 DG B 12 O4' - C1' - N9 ANGL. DEV. = 6.4 DEGREES
REMARK 500 1 DC B 14 O4' - C1' - N1 ANGL. DEV. = 2.9 DEGREES
REMARK 500 1 DC C 1 O4' - C1' - N1 ANGL. DEV. = 8.9 DEGREES
REMARK 500 1 DT C 2 C6 - C5 - C7 ANGL. DEV. = -6.2 DEGREES
REMARK 500 1 DC C 3 O4' - C1' - N1 ANGL. DEV. = 2.8 DEGREES
REMARK 500 1 DT C 4 C6 - C5 - C7 ANGL. DEV. = -3.7 DEGREES
REMARK 500 1 DC C 5 O4' - C1' - N1 ANGL. DEV. = 2.2 DEGREES
REMARK 500 1 DT C 6 O4' - C1' - N1 ANGL. DEV. = 3.5 DEGREES
REMARK 500 2 DA A 2 O4' - C1' - N9 ANGL. DEV. = 1.9 DEGREES
REMARK 500 2 DG A 7 O4' - C1' - N9 ANGL. DEV. = 3.8 DEGREES
REMARK 500 2 DG A 9 O4' - C1' - N9 ANGL. DEV. = 2.0 DEGREES
REMARK 500 2 DA A 10 O4' - C1' - N9 ANGL. DEV. = 5.4 DEGREES
REMARK 500 2 DC A 11 O4' - C1' - N1 ANGL. DEV. = 2.7 DEGREES
REMARK 500 2 DT A 13 O4' - C1' - N1 ANGL. DEV. = 1.9 DEGREES
REMARK 500 2 DA A 14 O4' - C1' - N9 ANGL. DEV. = 3.2 DEGREES
REMARK 500 2 DT B 1 O4' - C1' - N1 ANGL. DEV. = 8.1 DEGREES
REMARK 500 2 DC B 3 O4' - C1' - N1 ANGL. DEV. = 4.1 DEGREES
REMARK 500 2 DG B 4 O4' - C1' - N9 ANGL. DEV. = 2.8 DEGREES
REMARK 500 2 DC B 6 O4' - C1' - N1 ANGL. DEV. = 2.9 DEGREES
REMARK 500 2 DT B 7 O4' - C1' - N1 ANGL. DEV. = 2.7 DEGREES
REMARK 500 2 DT B 9 O4' - C1' - N1 ANGL. DEV. = 3.5 DEGREES
REMARK 500 2 DG B 12 O4' - C1' - N9 ANGL. DEV. = 5.9 DEGREES
REMARK 500 2 DC B 14 O4' - C1' - N1 ANGL. DEV. = 3.0 DEGREES
REMARK 500 2 DC C 1 O4' - C1' - N1 ANGL. DEV. = 8.6 DEGREES
REMARK 500 2 DT C 2 C6 - C5 - C7 ANGL. DEV. = -5.6 DEGREES
REMARK 500 2 DC C 3 O4' - C1' - N1 ANGL. DEV. = 2.7 DEGREES
REMARK 500 2 DT C 4 C6 - C5 - C7 ANGL. DEV. = -4.1 DEGREES
REMARK 500 2 DC C 5 O4' - C1' - N1 ANGL. DEV. = 2.2 DEGREES
REMARK 500 2 DT C 6 O4' - C1' - N1 ANGL. DEV. = 3.5 DEGREES
REMARK 500 3 DA A 2 O4' - C1' - N9 ANGL. DEV. = 1.9 DEGREES
REMARK 500 3 DT A 4 C4 - C5 - C6 ANGL. DEV. = 3.7 DEGREES
REMARK 500 3 DG A 7 O4' - C1' - N9 ANGL. DEV. = 3.7 DEGREES
REMARK 500 3 DA A 8 O4' - C1' - N9 ANGL. DEV. = 1.9 DEGREES
REMARK 500 3 DG A 9 O4' - C1' - N9 ANGL. DEV. = 2.4 DEGREES
REMARK 500 3 DA A 10 O4' - C1' - N9 ANGL. DEV. = 5.4 DEGREES
REMARK 500
REMARK 500 THIS ENTRY HAS 222 ANGLE DEVIATIONS.
REMARK 500
REMARK 500 REMARK: NULL
REMARK 900
REMARK 900 RELATED ENTRIES
REMARK 900 RELATED ID: 1BCB RELATED DB: PDB
REMARK 900 ENSEMBLE OF 10 STRUCTURES
REMARK 900 RELATED ID: 1BCE RELATED DB: PDB
REMARK 900 ENSEMBLE OF 10 STRUCTURES
DBREF 1BWG A 1 14 PDB 1BWG 1BWG 1 14
DBREF 1BWG B 1 14 PDB 1BWG 1BWG 1 14
DBREF 1BWG C 1 6 PDB 1BWG 1BWG 1 6
SEQRES 1 A 14 DG DA DC DT DG DA DG DA DG DA DC DG DT
SEQRES 2 A 14 DA
SEQRES 1 B 14 DT DA DC DG DT DC DT DC DT DC DA DG DT
SEQRES 2 B 14 DC
SEQRES 1 C 6 DC DT DC DT DC DT
CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 1.000000 0.000000 0.000000 0.00000
SCALE2 0.000000 1.000000 0.000000 0.00000
SCALE3 0.000000 0.000000 1.000000 0.00000
MODEL 1
Complete list - 16 20 Bytes