Header list of 1bfw.pdb file
Complete list - 29 20 Bytes
HEADER VIRAL PROTEIN 22-MAY-98 1BFW
TITLE RETRO-INVERSO ANALOGUE OF THE G-H LOOP OF VP1 IN FOOT-AND-MOUTH-
TITLE 2 DISEASE (FMD) VIRUS, NMR, 10 STRUCTURES
COMPND MOL_ID: 1;
COMPND 2 MOLECULE: VP1 PROTEIN;
COMPND 3 CHAIN: A;
COMPND 4 FRAGMENT: THE MAJOR IMMUNOGEN REGION, RESIDUES 141-159;
COMPND 5 ENGINEERED: YES;
COMPND 6 OTHER_DETAILS: RETRO-INVERSO PEPTIDE CORRESPONDING TO THE MAJOR
COMPND 7 IMMUNOGEN REGION OF THE FOOT-AND-MOUTH-DISEASE VIRUS CAPSID
SOURCE MOL_ID: 1
KEYWDS CAPSID, PEPTIDOMIMETIC, RETRO-INVERSO, FMDV, ANTIGEN, VIRAL PROTEIN
EXPDTA SOLUTION NMR
NUMMDL 10
AUTHOR M.C.PETIT,N.BENKIRANE,G.GUICHARD,A.PHAN CHAN DU,M.T.CUNG,J.P.BRIAND,
AUTHOR 2 S.MULLER
REVDAT 3 29-NOV-17 1BFW 1 REMARK HELIX
REVDAT 2 24-FEB-09 1BFW 1 VERSN
REVDAT 1 13-JAN-99 1BFW 0
JRNL AUTH M.C.PETIT,N.BENKIRANE,G.GUICHARD,A.P.DU,M.MARRAUD,M.T.CUNG,
JRNL AUTH 2 J.P.BRIAND,S.MULLER
JRNL TITL SOLUTION STRUCTURE OF A RETRO-INVERSO PEPTIDE ANALOGUE
JRNL TITL 2 MIMICKING THE FOOT-AND-MOUTH DISEASE VIRUS MAJOR ANTIGENIC
JRNL TITL 3 SITE. STRUCTURAL BASIS FOR ITS ANTIGENIC CROSS-REACTIVITY
JRNL TITL 4 WITH THE PARENT PEPTIDE.
JRNL REF J.BIOL.CHEM. V. 274 3686 1999
JRNL REFN ISSN 0021-9258
JRNL PMID 9920919
JRNL DOI 10.1074/JBC.274.6.3686
REMARK 2
REMARK 2 RESOLUTION. NOT APPLICABLE.
REMARK 3
REMARK 3 REFINEMENT.
REMARK 3 PROGRAM : DYANA
REMARK 3 AUTHORS : GUNTERT,WUTHRICH
REMARK 3
REMARK 3 OTHER REFINEMENT REMARKS: RESTRAINT ENERGY MINIMIZATION
REMARK 4
REMARK 4 1BFW COMPLIES WITH FORMAT V. 3.15, 01-DEC-08
REMARK 100
REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY BNL.
REMARK 100 THE DEPOSITION ID IS D_1000171706.
REMARK 210
REMARK 210 EXPERIMENTAL DETAILS
REMARK 210 EXPERIMENT TYPE : NMR
REMARK 210 TEMPERATURE (KELVIN) : 285
REMARK 210 PH : 5.7
REMARK 210 IONIC STRENGTH : 0.1 M PHOSPHATE
REMARK 210 PRESSURE : 1 ATM
REMARK 210 SAMPLE CONTENTS : 90% H2O:10% D2O
REMARK 210
REMARK 210 NMR EXPERIMENTS CONDUCTED : COSY; TOCSY NOESY; ROESY
REMARK 210 SPECTROMETER FIELD STRENGTH : 400 MHZ
REMARK 210 SPECTROMETER MODEL : DRX400
REMARK 210 SPECTROMETER MANUFACTURER : BRUKER
REMARK 210
REMARK 210 STRUCTURE DETERMINATION.
REMARK 210 SOFTWARE USED : DYANA 1.4
REMARK 210 METHOD USED : TORSION ANGLE DYNAMICS,
REMARK 210 ANNEALING, MINIMIZATION
REMARK 210
REMARK 210 CONFORMERS, NUMBER CALCULATED : 50
REMARK 210 CONFORMERS, NUMBER SUBMITTED : 10
REMARK 210 CONFORMERS, SELECTION CRITERIA : LEAST RESTRAINTS VIOLATIONS,
REMARK 210 TARGET FUNCTION
REMARK 210
REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : NULL
REMARK 210
REMARK 210 REMARK: NULL
REMARK 215
REMARK 215 NMR STUDY
REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION
REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT
REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON
REMARK 215 THESE RECORDS ARE MEANINGLESS.
REMARK 300
REMARK 300 BIOMOLECULE: 1
REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM
REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN
REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON
REMARK 300 BURIED SURFACE AREA.
REMARK 350
REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN
REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE
REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS
REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND
REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN.
REMARK 350
REMARK 350 BIOMOLECULE: 1
REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC
REMARK 350 APPLY THE FOLLOWING TO CHAINS: A
REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000
REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000
REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000
REMARK 500
REMARK 500 GEOMETRY AND STEREOCHEMISTRY
REMARK 500 SUBTOPIC: TORSION ANGLES
REMARK 500
REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS:
REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER;
REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE).
REMARK 500
REMARK 500 STANDARD TABLE:
REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2)
REMARK 500
REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI-
REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400
REMARK 500
REMARK 500 M RES CSSEQI PSI PHI
REMARK 500 1 DGN A 158 72.91 127.25
REMARK 500 1 DAR A 157 70.43 144.31
REMARK 500 1 DAL A 156 -69.39 154.87
REMARK 500 1 DLE A 151 77.82 132.44
REMARK 500 1 DAS A 147 -69.26 165.48
REMARK 500 1 DSN A 142 -99.89 163.99
REMARK 500 2 DAR A 157 70.33 144.44
REMARK 500 2 DAL A 156 -69.92 166.60
REMARK 500 2 DAR A 154 -62.68 170.34
REMARK 500 2 DAL A 152 -98.41 42.67
REMARK 500 2 DLE A 151 55.53 142.64
REMARK 500 2 DSN A 150 -85.71 152.73
REMARK 500 2 DAS A 147 -66.18 165.88
REMARK 500 2 DAR A 145 -116.76 170.52
REMARK 500 2 DVA A 144 -98.66 69.41
REMARK 500 3 DAR A 157 84.36 169.20
REMARK 500 3 DAL A 156 -68.56 157.29
REMARK 500 3 DAR A 154 -65.04 170.58
REMARK 500 3 DAL A 152 -95.02 25.13
REMARK 500 3 DSN A 150 -108.17 36.87
REMARK 500 3 DAS A 147 -67.84 164.18
REMARK 500 3 DAR A 145 -141.52 170.42
REMARK 500 4 DGN A 158 154.41 125.66
REMARK 500 4 DAR A 157 83.24 95.86
REMARK 500 4 DLE A 151 65.01 131.99
REMARK 500 4 DPN A 148 -157.55 37.79
REMARK 500 4 DAS A 147 -65.30 163.68
REMARK 500 4 DAR A 145 -97.08 27.77
REMARK 500 5 DAR A 154 -59.69 170.82
REMARK 500 5 DAL A 152 -90.67 9.04
REMARK 500 5 DLE A 151 42.79 146.67
REMARK 500 5 DSN A 150 -132.29 170.44
REMARK 500 5 DAS A 147 -69.32 166.53
REMARK 500 5 DAR A 145 -141.40 170.47
REMARK 500 5 DSN A 142 -109.68 166.37
REMARK 500 6 DAR A 157 83.68 165.06
REMARK 500 6 DAL A 152 -106.80 57.00
REMARK 500 6 DLE A 151 58.05 140.47
REMARK 500 6 DAS A 147 -58.74 168.26
REMARK 500 6 DAR A 145 -141.50 170.50
REMARK 500 6 DSN A 142 -112.56 164.26
REMARK 500 7 DAL A 156 -66.15 170.27
REMARK 500 7 DAR A 154 -62.90 170.07
REMARK 500 7 DAL A 152 -95.39 52.14
REMARK 500 7 DLE A 151 70.03 139.09
REMARK 500 7 DAS A 147 -64.55 166.24
REMARK 500 7 DAR A 145 -109.34 170.75
REMARK 500 7 DVA A 144 -91.43 55.09
REMARK 500 8 DGN A 158 154.30 125.56
REMARK 500 8 DAR A 157 83.55 37.48
REMARK 500
REMARK 500 THIS ENTRY HAS 69 RAMACHANDRAN OUTLIERS.
REMARK 500
REMARK 500 REMARK: NULL
DBREF 1BFW A 159 140 PDB 1BFW 1BFW 159 140
SEQRES 1 A 20 LML DGN DAR DAL DVA DAR DPR DAL DLE DSN GLY DPN DAS
SEQRES 2 A 20 GLY DAR DVA GLY DSN GLY NH2
MODRES 1BFW DGN A 158 GLN D-GLUTAMINE
MODRES 1BFW DAR A 157 ARG D-ARGININE
MODRES 1BFW DAL A 156 ALA D-ALANINE
MODRES 1BFW DVA A 155 VAL D-VALINE
MODRES 1BFW DAR A 154 ARG D-ARGININE
MODRES 1BFW DPR A 153 PRO D-PROLINE
MODRES 1BFW DAL A 152 ALA D-ALANINE
MODRES 1BFW DLE A 151 LEU D-LEUCINE
MODRES 1BFW DSN A 150 SER D-SERINE
MODRES 1BFW DAS A 147 ASP D-ASPARTIC ACID
MODRES 1BFW DAR A 145 ARG D-ARGININE
MODRES 1BFW DVA A 144 VAL D-VALINE
MODRES 1BFW DSN A 142 SER D-SERINE
HET LML A 159 20
HET DGN A 158 17
HET DAR A 157 23
HET DAL A 156 10
HET DVA A 155 16
HET DAR A 154 23
HET DPR A 153 14
HET DAL A 152 10
HET DLE A 151 19
HET DSN A 150 11
HET DPN A 148 20
HET DAS A 147 13
HET DAR A 145 23
HET DVA A 144 16
HET DSN A 142 11
HET NH2 A 140 3
HETNAM LML ISOBUTYL MALONIC ACID
HETNAM DGN D-GLUTAMINE
HETNAM DAR D-ARGININE
HETNAM DAL D-ALANINE
HETNAM DVA D-VALINE
HETNAM DPR D-PROLINE
HETNAM DLE D-LEUCINE
HETNAM DSN D-SERINE
HETNAM DPN D-PHENYLALANINE
HETNAM DAS D-ASPARTIC ACID
HETNAM NH2 AMINO GROUP
FORMUL 1 LML C7 H12 O4
FORMUL 1 DGN C5 H10 N2 O3
FORMUL 1 DAR 3(C6 H15 N4 O2 1+)
FORMUL 1 DAL 2(C3 H7 N O2)
FORMUL 1 DVA 2(C5 H11 N O2)
FORMUL 1 DPR C5 H9 N O2
FORMUL 1 DLE C6 H13 N O2
FORMUL 1 DSN 2(C3 H7 N O3)
FORMUL 1 DPN C9 H11 N O2
FORMUL 1 DAS C4 H7 N O4
FORMUL 1 NH2 H2 N
LINK C LML A 159 N DGN A 158 1555 1555 1.33
LINK C DGN A 158 N DAR A 157 1555 1555 1.33
LINK C DAR A 157 N DAL A 156 1555 1555 1.33
LINK C DAL A 156 N DVA A 155 1555 1555 1.33
LINK C DVA A 155 N DAR A 154 1555 1555 1.33
LINK C DAR A 154 N DPR A 153 1555 1555 1.36
LINK C DPR A 153 N DAL A 152 1555 1555 1.33
LINK C DAL A 152 N DLE A 151 1555 1555 1.33
LINK C DLE A 151 N DSN A 150 1555 1555 1.33
LINK C DSN A 150 N GLY A 149 1555 1555 1.32
LINK N DPN A 148 C GLY A 149 1555 1555 1.33
LINK C DPN A 148 N DAS A 147 1555 1555 1.33
LINK C DAS A 147 N GLY A 146 1555 1555 1.33
LINK N DAR A 145 C GLY A 146 1555 1555 1.33
LINK C DAR A 145 N DVA A 144 1555 1555 1.33
LINK C DVA A 144 N GLY A 143 1555 1555 1.33
LINK N DSN A 142 C GLY A 143 1555 1555 1.33
LINK C DSN A 142 N GLY A 141 1555 1555 1.33
LINK N NH2 A 140 C GLY A 141 1555 1555 1.33
CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 1.000000 0.000000 0.000000 0.00000
SCALE2 0.000000 1.000000 0.000000 0.00000
SCALE3 0.000000 0.000000 1.000000 0.00000
MODEL 1
Complete list - 29 20 Bytes