Header list of 1aa9.pdb file
Complete list - 16 20 Bytes
HEADER PROTO-ONCOGENE 27-JAN-97 1AA9
TITLE HUMAN C-HA-RAS(1-171)(DOT)GDP, NMR, MINIMIZED AVERAGE STRUCTURE
COMPND MOL_ID: 1;
COMPND 2 MOLECULE: C-HA-RAS;
COMPND 3 CHAIN: A;
COMPND 4 FRAGMENT: RESIDUES 1 - 171;
COMPND 5 ENGINEERED: YES;
COMPND 6 OTHER_DETAILS: COMPLEXED TO GUANOSINE 5'-DIPHOSPHATE
SOURCE MOL_ID: 1;
SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS;
SOURCE 3 ORGANISM_COMMON: HUMAN;
SOURCE 4 ORGANISM_TAXID: 9606;
SOURCE 5 GENE: HUMAN C-HA-RAS GENE;
SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI;
SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562;
SOURCE 8 EXPRESSION_SYSTEM_STRAIN: TG1;
SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PRGH;
SOURCE 10 EXPRESSION_SYSTEM_GENE: HUMAN C-HA-RAS GENE
KEYWDS RAS, ONCOGENE PROTEIN, GTP-BINDING PROTEIN, PROTO-ONCOGENE, RIKEN
KEYWDS 2 STRUCTURAL GENOMICS/PROTEOMICS INITIATIVE, RSGI, STRUCTURAL GENOMICS
EXPDTA SOLUTION NMR
AUTHOR Y.ITO,Y.YAMASAKI,Y.MUTO,G.KAWAI,S.NISHIMURA,T.MIYAZAWA,S.YOKOYAMA,
AUTHOR 2 RIKEN STRUCTURAL GENOMICS/PROTEOMICS INITIATIVE (RSGI)
REVDAT 3 16-FEB-22 1AA9 1 REMARK LINK
REVDAT 2 24-FEB-09 1AA9 1 VERSN
REVDAT 1 29-JUL-97 1AA9 0
JRNL AUTH Y.ITO,K.YAMASAKI,J.IWAHARA,T.TERADA,A.KAMIYA,M.SHIROUZU,
JRNL AUTH 2 Y.MUTO,G.KAWAI,S.YOKOYAMA,E.D.LAUE,M.WALCHLI,T.SHIBATA,
JRNL AUTH 3 S.NISHIMURA,T.MIYAZAWA
JRNL TITL REGIONAL POLYSTERISM IN THE GTP-BOUND FORM OF THE HUMAN
JRNL TITL 2 C-HA-RAS PROTEIN.
JRNL REF BIOCHEMISTRY V. 36 9109 1997
JRNL REFN ISSN 0006-2960
JRNL PMID 9230043
JRNL DOI 10.1021/BI970296U
REMARK 2
REMARK 2 RESOLUTION. NOT APPLICABLE.
REMARK 3
REMARK 3 REFINEMENT.
REMARK 3 PROGRAM : X-PLOR 3.1
REMARK 3 AUTHORS : BRUNGER
REMARK 3
REMARK 3 OTHER REFINEMENT REMARKS: SIMULATED ANNEALING REFINEMENT FOR NMR
REMARK 3 STRUCTURE DETERMINATION.
REMARK 4
REMARK 4 1AA9 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11
REMARK 100
REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY BNL.
REMARK 100 THE DEPOSITION ID IS D_1000170587.
REMARK 210
REMARK 210 EXPERIMENTAL DETAILS
REMARK 210 EXPERIMENT TYPE : NMR
REMARK 210 TEMPERATURE (KELVIN) : 303
REMARK 210 PH : 5.5
REMARK 210 IONIC STRENGTH : NULL
REMARK 210 PRESSURE : NULL
REMARK 210 SAMPLE CONTENTS : NULL
REMARK 210
REMARK 210 NMR EXPERIMENTS CONDUCTED : 1H-1H NOESY; 1H-15N HSQC; 1H-13C
REMARK 210 HSQC; HMQC-J; 3D 15N-SEPARATED
REMARK 210 NOESY; 3D 13C-SEPARATED NOESY;
REMARK 210 HNHB; HN(CO)HB; HNCA; HN(CO)CA;
REMARK 210 HNCO; HNCACB; HCACO; HCCH-COSY;
REMARK 210 HCCH-TOCSY
REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ; 400 MHZ
REMARK 210 SPECTROMETER MODEL : AMX600; ARX400
REMARK 210 SPECTROMETER MANUFACTURER : BRUKER
REMARK 210
REMARK 210 STRUCTURE DETERMINATION.
REMARK 210 SOFTWARE USED : FELIX 2.3, AZARA 1.0, X-PLOR 3.1
REMARK 210 METHOD USED : SIMULATED ANNEALING
REMARK 210
REMARK 210 CONFORMERS, NUMBER CALCULATED : 30
REMARK 210 CONFORMERS, NUMBER SUBMITTED : 1
REMARK 210 CONFORMERS, SELECTION CRITERIA : MINIMIZED AVERAGE STRUCTURE
REMARK 210
REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : NULL
REMARK 210
REMARK 210 REMARK: NULL
REMARK 215
REMARK 215 NMR STUDY
REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION
REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT
REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON
REMARK 215 THESE RECORDS ARE MEANINGLESS.
REMARK 300
REMARK 300 BIOMOLECULE: 1
REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM
REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN
REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON
REMARK 300 BURIED SURFACE AREA.
REMARK 350
REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN
REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE
REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS
REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND
REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN.
REMARK 350
REMARK 350 BIOMOLECULE: 1
REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC
REMARK 350 APPLY THE FOLLOWING TO CHAINS: A
REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000
REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000
REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000
REMARK 500
REMARK 500 GEOMETRY AND STEREOCHEMISTRY
REMARK 500 SUBTOPIC: CLOSE CONTACTS
REMARK 500
REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT.
REMARK 500
REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE
REMARK 500 O ILE A 46 N GLY A 48 2.19
REMARK 500
REMARK 500 REMARK: NULL
REMARK 500
REMARK 500 GEOMETRY AND STEREOCHEMISTRY
REMARK 500 SUBTOPIC: TORSION ANGLES
REMARK 500
REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS:
REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER;
REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE).
REMARK 500
REMARK 500 STANDARD TABLE:
REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2)
REMARK 500
REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI-
REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400
REMARK 500
REMARK 500 M RES CSSEQI PSI PHI
REMARK 500 LYS A 5 93.13 -48.69
REMARK 500 ALA A 18 -42.38 -29.39
REMARK 500 ILE A 24 -80.32 -104.09
REMARK 500 PRO A 34 42.38 -79.70
REMARK 500 THR A 35 -38.18 -147.92
REMARK 500 ILE A 36 177.86 -49.13
REMARK 500 GLU A 37 123.37 -171.05
REMARK 500 LYS A 42 136.47 176.89
REMARK 500 VAL A 44 -163.31 -128.00
REMARK 500 ASP A 47 74.71 -30.03
REMARK 500 GLU A 49 -133.18 -110.74
REMARK 500 THR A 58 137.28 67.38
REMARK 500 ALA A 59 -165.59 -109.97
REMARK 500 GLN A 61 24.74 44.06
REMARK 500 GLU A 62 -97.72 -143.12
REMARK 500 GLU A 63 -57.69 -163.92
REMARK 500 TYR A 64 -106.52 -146.45
REMARK 500 ARG A 68 56.19 -90.06
REMARK 500 LYS A 88 -75.56 -39.57
REMARK 500 TYR A 96 -72.17 -63.48
REMARK 500 ILE A 100 -74.55 -54.16
REMARK 500 LYS A 101 -28.15 -37.44
REMARK 500 LYS A 104 -91.82 -53.34
REMARK 500 ASP A 105 -51.88 -162.37
REMARK 500 SER A 106 -163.88 -128.60
REMARK 500 ASP A 108 45.30 -145.27
REMARK 500 ASN A 116 -134.03 -59.28
REMARK 500 LYS A 117 70.30 -25.63
REMARK 500 ASP A 119 -77.79 -42.76
REMARK 500 LEU A 120 -173.94 -52.84
REMARK 500 ALA A 121 -107.83 -88.96
REMARK 500 ALA A 122 -173.75 46.62
REMARK 500 ARG A 123 74.34 146.43
REMARK 500 THR A 144 -157.87 -122.83
REMARK 500 SER A 145 110.07 -161.97
REMARK 500 ARG A 149 28.21 42.55
REMARK 500 VAL A 152 -35.71 -39.30
REMARK 500 ILE A 163 -74.13 -77.50
REMARK 500 LEU A 168 -61.31 -100.70
REMARK 500 LYS A 170 -73.64 -21.34
REMARK 500
REMARK 500 REMARK: NULL
REMARK 500
REMARK 500 GEOMETRY AND STEREOCHEMISTRY
REMARK 500 SUBTOPIC: PLANAR GROUPS
REMARK 500
REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL
REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE
REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN
REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS
REMARK 500 AN RMSD GREATER THAN THIS VALUE
REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER;
REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE).
REMARK 500
REMARK 500 M RES CSSEQI RMS TYPE
REMARK 500 ARG A 41 0.29 SIDE CHAIN
REMARK 500 ARG A 68 0.31 SIDE CHAIN
REMARK 500 ARG A 73 0.20 SIDE CHAIN
REMARK 500 ARG A 97 0.27 SIDE CHAIN
REMARK 500 ARG A 102 0.12 SIDE CHAIN
REMARK 500 ARG A 123 0.26 SIDE CHAIN
REMARK 500 ARG A 128 0.25 SIDE CHAIN
REMARK 500 ARG A 135 0.22 SIDE CHAIN
REMARK 500 ARG A 149 0.30 SIDE CHAIN
REMARK 500 ARG A 161 0.32 SIDE CHAIN
REMARK 500 ARG A 164 0.31 SIDE CHAIN
REMARK 500 ARG A 169 0.29 SIDE CHAIN
REMARK 500
REMARK 500 REMARK: NULL
REMARK 620
REMARK 620 METAL COORDINATION
REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER;
REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE):
REMARK 620
REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL
REMARK 620 MG A 173 MG
REMARK 620 N RES CSSEQI ATOM
REMARK 620 1 SER A 17 OG
REMARK 620 2 TYR A 32 O 117.1
REMARK 620 3 ASP A 33 O 139.4 80.9
REMARK 620 4 GDP A 180 O1B 109.4 74.5 110.5
REMARK 620 5 GDP A 180 O2B 58.7 89.7 161.9 51.7
REMARK 620 N 1 2 3 4
REMARK 800
REMARK 800 SITE
REMARK 800 SITE_IDENTIFIER: AC1
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 173
REMARK 800
REMARK 800 SITE_IDENTIFIER: AC2
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GDP A 180
REMARK 900
REMARK 900 RELATED ENTRIES
REMARK 900 RELATED ID: TRT001000212.1 RELATED DB: TARGETDB
DBREF 1AA9 A 1 171 UNP P01112 RASH_HUMAN 1 171
SEQRES 1 A 171 MET THR GLU TYR LYS LEU VAL VAL VAL GLY ALA GLY GLY
SEQRES 2 A 171 VAL GLY LYS SER ALA LEU THR ILE GLN LEU ILE GLN ASN
SEQRES 3 A 171 HIS PHE VAL ASP GLU TYR ASP PRO THR ILE GLU ASP SER
SEQRES 4 A 171 TYR ARG LYS GLN VAL VAL ILE ASP GLY GLU THR CYS LEU
SEQRES 5 A 171 LEU ASP ILE LEU ASP THR ALA GLY GLN GLU GLU TYR SER
SEQRES 6 A 171 ALA MET ARG ASP GLN TYR MET ARG THR GLY GLU GLY PHE
SEQRES 7 A 171 LEU CYS VAL PHE ALA ILE ASN ASN THR LYS SER PHE GLU
SEQRES 8 A 171 ASP ILE HIS GLN TYR ARG GLU GLN ILE LYS ARG VAL LYS
SEQRES 9 A 171 ASP SER ASP ASP VAL PRO MET VAL LEU VAL GLY ASN LYS
SEQRES 10 A 171 CYS ASP LEU ALA ALA ARG THR VAL GLU SER ARG GLN ALA
SEQRES 11 A 171 GLN ASP LEU ALA ARG SER TYR GLY ILE PRO TYR ILE GLU
SEQRES 12 A 171 THR SER ALA LYS THR ARG GLN GLY VAL GLU ASP ALA PHE
SEQRES 13 A 171 TYR THR LEU VAL ARG GLU ILE ARG GLN HIS LYS LEU ARG
SEQRES 14 A 171 LYS LEU
HET MG A 173 1
HET GDP A 180 40
HETNAM MG MAGNESIUM ION
HETNAM GDP GUANOSINE-5'-DIPHOSPHATE
FORMUL 2 MG MG 2+
FORMUL 3 GDP C10 H15 N5 O11 P2
HELIX 1 H1 LYS A 16 ILE A 24 1 9
HELIX 2 H2 ASP A 69 ARG A 73 1 5
HELIX 3 H3 GLU A 91 LYS A 104 1 14
HELIX 4 H4 GLU A 126 TYR A 137 1 12
HELIX 5 H5 VAL A 152 GLN A 165 1 14
SHEET 1 S1 6 SER A 39 ILE A 46 0
SHEET 2 S1 6 GLU A 49 ASP A 57 -1 O LEU A 53 N LYS A 42
SHEET 3 S1 6 THR A 2 VAL A 9 1 O LEU A 6 N LEU A 56
SHEET 4 S1 6 GLY A 77 ILE A 84 1 O LEU A 79 N VAL A 9
SHEET 5 S1 6 PRO A 110 LYS A 117 1 O VAL A 112 N CYS A 80
SHEET 6 S1 6 PRO A 140 THR A 144 1 O ILE A 142 N GLY A 115
LINK OG SER A 17 MG MG A 173 1555 1555 2.64
LINK O TYR A 32 MG MG A 173 1555 1555 3.10
LINK O ASP A 33 MG MG A 173 1555 1555 2.44
LINK MG MG A 173 O1B GDP A 180 1555 1555 2.80
LINK MG MG A 173 O2B GDP A 180 1555 1555 2.90
SITE 1 AC1 4 SER A 17 TYR A 32 ASP A 33 GDP A 180
SITE 1 AC2 13 GLY A 12 GLY A 13 GLY A 15 LYS A 16
SITE 2 AC2 13 SER A 17 PHE A 28 ASP A 30 TYR A 32
SITE 3 AC2 13 LYS A 117 SER A 145 ALA A 146 LYS A 147
SITE 4 AC2 13 MG A 173
CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 1.000000 0.000000 0.000000 0.00000
SCALE2 0.000000 1.000000 0.000000 0.00000
SCALE3 0.000000 0.000000 1.000000 0.00000
Complete list - 16 20 Bytes