Header list of 1a8w.pdb file
Complete list - 16 20 Bytes
HEADER DNA 28-MAR-98 1A8W
TITLE A K+ CATION-INDUCED CONFORMATIONAL SWITCH WITHIN A LOOP SPANNING
TITLE 2 SEGMENT OF A DNA QUADRUPLEX CONTAINING G-G-G-C REPEATS, NMR, 8
TITLE 3 STRUCTURES
COMPND MOL_ID: 1;
COMPND 2 MOLECULE: DNA QUADRUPLEX CONTAINING GGGG TETRADS AND GC WATSON-CRICK
COMPND 3 BASE PAIRS;
COMPND 4 CHAIN: A, B;
COMPND 5 ENGINEERED: YES;
COMPND 6 OTHER_DETAILS: K+ CATION STABILIZED
SOURCE MOL_ID: 1;
SOURCE 2 SYNTHETIC: YES
KEYWDS CATION DEPENDENT CONFORMATIONAL TRANSITIONS, K+ CATION COORDINATION
KEYWDS 2 SITES, K+ CATION ENCAPSULATION WITHIN A HAIRPIN LOOP, DNA
KEYWDS 3 QUADRUPLEXES TARGETED TO HIV INTEGRASE, DEOXYRIBONUCLEIC ACID, G-G-
KEYWDS 4 G-C REPEAT-CONTAINING DNA QUADRUPLEXES, MONOVALENT, DNA
EXPDTA SOLUTION NMR
NUMMDL 8
AUTHOR S.BOUAZIZ,A.KETTANI,D.J.PATEL
REVDAT 4 16-FEB-22 1A8W 1 REMARK
REVDAT 3 24-FEB-09 1A8W 1 VERSN
REVDAT 2 18-NOV-98 1A8W 1 COMPND REMARK TITLE JRNL
REVDAT 2 2 1 KEYWDS HEADER
REVDAT 1 14-OCT-98 1A8W 0
JRNL AUTH S.BOUAZIZ,A.KETTANI,D.J.PATEL
JRNL TITL A K CATION-INDUCED CONFORMATIONAL SWITCH WITHIN A LOOP
JRNL TITL 2 SPANNING SEGMENT OF A DNA QUADRUPLEX CONTAINING G-G-G-C
JRNL TITL 3 REPEATS.
JRNL REF J.MOL.BIOL. V. 282 637 1998
JRNL REFN ISSN 0022-2836
JRNL PMID 9737927
JRNL DOI 10.1006/JMBI.1998.2031
REMARK 2
REMARK 2 RESOLUTION. NOT APPLICABLE.
REMARK 3
REMARK 3 REFINEMENT.
REMARK 3 PROGRAM : X-PLOR 3.1
REMARK 3 AUTHORS : BRUNGER
REMARK 3
REMARK 3 OTHER REFINEMENT REMARKS: REFINEMENT DETAILS CAN BE FOUND IN THE
REMARK 3 JRNL CITATION ABOVE
REMARK 4
REMARK 4 1A8W COMPLIES WITH FORMAT V. 3.15, 01-DEC-08
REMARK 100
REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY BNL.
REMARK 100 THE DEPOSITION ID IS D_1000170539.
REMARK 210
REMARK 210 EXPERIMENTAL DETAILS
REMARK 210 EXPERIMENT TYPE : NMR
REMARK 210 TEMPERATURE (KELVIN) : 293
REMARK 210 PH : 6.5
REMARK 210 IONIC STRENGTH : NULL
REMARK 210 PRESSURE : 1 ATM
REMARK 210 SAMPLE CONTENTS : 5 MM NACL, 0.2 MM NA2HPO4
REMARK 210
REMARK 210 NMR EXPERIMENTS CONDUCTED : NOESY; TOCSY; COSY
REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ
REMARK 210 SPECTROMETER MODEL : UNITY INOVA
REMARK 210 SPECTROMETER MANUFACTURER : VARIAN
REMARK 210
REMARK 210 STRUCTURE DETERMINATION.
REMARK 210 SOFTWARE USED : X-PLOR
REMARK 210 METHOD USED : DISTANCE GEOMETRY
REMARK 210
REMARK 210 CONFORMERS, NUMBER CALCULATED : 100
REMARK 210 CONFORMERS, NUMBER SUBMITTED : 8
REMARK 210 CONFORMERS, SELECTION CRITERIA : ACCEPTABLE COVALENT ENERGY, LOW
REMARK 210 DISTANCE RESTRAINT VIOLATIONS,
REMARK 210 FAVORABLE NON-BONDED ENERGY
REMARK 210
REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : NULL
REMARK 210
REMARK 210 REMARK: STRUCTURE DETERMINED BY USING 5 NOESY MIXING TIME
REMARK 210 EXPERIMENTS IN D2O (50, 100, 150, 200 AND 300 MS) AND 2 NOESY
REMARK 210 MIXING TIME EXPERIMENTS IN H2O (80 AND 250 MS)
REMARK 215
REMARK 215 NMR STUDY
REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION
REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT
REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON
REMARK 215 THESE RECORDS ARE MEANINGLESS.
REMARK 300
REMARK 300 BIOMOLECULE: 1
REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM
REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN
REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON
REMARK 300 BURIED SURFACE AREA.
REMARK 350
REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN
REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE
REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS
REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND
REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN.
REMARK 350
REMARK 350 BIOMOLECULE: 1
REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC
REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B
REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000
REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000
REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000
REMARK 500
REMARK 500 GEOMETRY AND STEREOCHEMISTRY
REMARK 500 SUBTOPIC: CLOSE CONTACTS
REMARK 500
REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT.
REMARK 500
REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE
REMARK 500 H3 DT A 6 O2 DT A 8 1.56
REMARK 500 H3 DT B 6 O2 DT B 8 1.56
REMARK 500
REMARK 500 REMARK: NULL
REMARK 500
REMARK 500 GEOMETRY AND STEREOCHEMISTRY
REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS
REMARK 500
REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES
REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE
REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN
REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE).
REMARK 500
REMARK 500 STANDARD TABLE:
REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3)
REMARK 500
REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999
REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996
REMARK 500
REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION
REMARK 500 1 DG A 1 C5' DG A 1 C4' 0.050
REMARK 500 1 DC A 4 C5' DC A 4 C4' 0.043
REMARK 500 1 DT A 5 C5 DT A 5 C7 0.043
REMARK 500 1 DT A 7 C5 DT A 7 C7 0.044
REMARK 500 1 DG B 1 C5' DG B 1 C4' 0.050
REMARK 500 1 DT B 5 C5 DT B 5 C7 0.055
REMARK 500 1 DT B 7 C5 DT B 7 C7 0.043
REMARK 500 1 DT B 8 C5' DT B 8 C4' 0.044
REMARK 500 2 DC A 4 C5' DC A 4 C4' 0.043
REMARK 500 2 DT A 5 C5 DT A 5 C7 0.043
REMARK 500 2 DT A 7 C5 DT A 7 C7 0.037
REMARK 500 2 DT A 8 C5' DT A 8 C4' 0.069
REMARK 500 2 DG A 9 C5' DG A 9 C4' 0.047
REMARK 500 2 DC B 4 C5' DC B 4 C4' 0.043
REMARK 500 2 DT B 5 C5 DT B 5 C7 0.037
REMARK 500 2 DT B 7 C5 DT B 7 C7 0.044
REMARK 500 2 DT B 8 C5' DT B 8 C4' 0.067
REMARK 500 2 DG B 9 C5' DG B 9 C4' 0.047
REMARK 500 3 DG A 1 C5' DG A 1 C4' 0.043
REMARK 500 3 DT A 7 C5 DT A 7 C7 0.043
REMARK 500 3 DT A 8 C5' DT A 8 C4' 0.073
REMARK 500 3 DT A 8 C5 DT A 8 C7 0.039
REMARK 500 3 DG A 9 C5' DG A 9 C4' 0.049
REMARK 500 3 DG B 1 C5' DG B 1 C4' 0.043
REMARK 500 3 DT B 5 C5 DT B 5 C7 0.059
REMARK 500 3 DT B 7 C5 DT B 7 C7 0.043
REMARK 500 3 DT B 8 C5' DT B 8 C4' 0.074
REMARK 500 3 DT B 8 C5 DT B 8 C7 0.040
REMARK 500 3 DG B 9 C5' DG B 9 C4' 0.050
REMARK 500 4 DC A 4 C5' DC A 4 C4' 0.047
REMARK 500 4 DT A 5 C5 DT A 5 C7 0.044
REMARK 500 4 DT A 7 C5 DT A 7 C7 0.040
REMARK 500 4 DT A 8 C5' DT A 8 C4' 0.062
REMARK 500 4 DT A 8 C5 DT A 8 C7 0.048
REMARK 500 4 DG A 9 C5' DG A 9 C4' 0.049
REMARK 500 4 DC B 4 C5' DC B 4 C4' 0.048
REMARK 500 4 DT B 5 C5 DT B 5 C7 0.041
REMARK 500 4 DT B 7 C5 DT B 7 C7 0.040
REMARK 500 4 DT B 8 C5' DT B 8 C4' 0.061
REMARK 500 4 DT B 8 C5 DT B 8 C7 0.047
REMARK 500 4 DG B 9 C5' DG B 9 C4' 0.048
REMARK 500 5 DT A 5 C5' DT A 5 C4' 0.046
REMARK 500 5 DT A 5 C5 DT A 5 C7 0.048
REMARK 500 5 DT A 6 C5 DT A 6 C7 0.038
REMARK 500 5 DT A 7 C5 DT A 7 C7 0.042
REMARK 500 5 DT A 8 C5' DT A 8 C4' 0.078
REMARK 500 5 DT B 5 C5' DT B 5 C4' 0.045
REMARK 500 5 DT B 5 C5 DT B 5 C7 0.049
REMARK 500 5 DT B 6 C5 DT B 6 C7 0.041
REMARK 500 5 DT B 7 C5 DT B 7 C7 0.042
REMARK 500
REMARK 500 THIS ENTRY HAS 76 BOND DEVIATIONS.
REMARK 500
REMARK 500 REMARK: NULL
REMARK 500
REMARK 500 GEOMETRY AND STEREOCHEMISTRY
REMARK 500 SUBTOPIC: COVALENT BOND ANGLES
REMARK 500
REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES
REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE
REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN
REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE).
REMARK 500
REMARK 500 STANDARD TABLE:
REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1)
REMARK 500
REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999
REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996
REMARK 500
REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3
REMARK 500 1 DG A 1 C5' - C4' - C3' ANGL. DEV. = 9.9 DEGREES
REMARK 500 1 DG A 1 C3' - C2' - C1' ANGL. DEV. = -6.0 DEGREES
REMARK 500 1 DG A 2 C3' - C2' - C1' ANGL. DEV. = -5.5 DEGREES
REMARK 500 1 DG A 2 O4' - C1' - N9 ANGL. DEV. = 4.7 DEGREES
REMARK 500 1 DC A 4 O4' - C4' - C3' ANGL. DEV. = -3.5 DEGREES
REMARK 500 1 DC A 4 C5' - C4' - C3' ANGL. DEV. = 7.7 DEGREES
REMARK 500 1 DC A 4 C4' - C3' - C2' ANGL. DEV. = -4.2 DEGREES
REMARK 500 1 DC A 4 C3' - C2' - C1' ANGL. DEV. = -7.2 DEGREES
REMARK 500 1 DT A 6 C4' - C3' - C2' ANGL. DEV. = -4.7 DEGREES
REMARK 500 1 DT A 6 O4' - C1' - C2' ANGL. DEV. = -6.3 DEGREES
REMARK 500 1 DT A 7 C4' - C3' - O3' ANGL. DEV. = 13.4 DEGREES
REMARK 500 1 DT A 8 C6 - C5 - C7 ANGL. DEV. = -4.3 DEGREES
REMARK 500 1 DG A 9 C5' - C4' - C3' ANGL. DEV. = 7.4 DEGREES
REMARK 500 1 DG A 9 C4' - C3' - C2' ANGL. DEV. = -4.6 DEGREES
REMARK 500 1 DG A 10 C3' - C2' - C1' ANGL. DEV. = -8.5 DEGREES
REMARK 500 1 DG A 10 O4' - C1' - C2' ANGL. DEV. = -5.3 DEGREES
REMARK 500 1 DG A 10 C3' - O3' - P ANGL. DEV. = 7.5 DEGREES
REMARK 500 1 DC A 12 C4' - C3' - C2' ANGL. DEV. = -5.1 DEGREES
REMARK 500 1 DC A 12 C3' - C2' - C1' ANGL. DEV. = -5.5 DEGREES
REMARK 500 1 DG B 1 C5' - C4' - C3' ANGL. DEV. = 9.9 DEGREES
REMARK 500 1 DG B 1 C3' - C2' - C1' ANGL. DEV. = -6.0 DEGREES
REMARK 500 1 DG B 2 C3' - C2' - C1' ANGL. DEV. = -5.5 DEGREES
REMARK 500 1 DG B 2 O4' - C1' - N9 ANGL. DEV. = 4.6 DEGREES
REMARK 500 1 DG B 3 O4' - C1' - N9 ANGL. DEV. = 1.9 DEGREES
REMARK 500 1 DC B 4 O4' - C4' - C3' ANGL. DEV. = -3.5 DEGREES
REMARK 500 1 DC B 4 C5' - C4' - C3' ANGL. DEV. = 7.8 DEGREES
REMARK 500 1 DC B 4 C4' - C3' - C2' ANGL. DEV. = -4.2 DEGREES
REMARK 500 1 DC B 4 C3' - C2' - C1' ANGL. DEV. = -7.3 DEGREES
REMARK 500 1 DT B 6 C4' - C3' - C2' ANGL. DEV. = -4.7 DEGREES
REMARK 500 1 DT B 6 O4' - C1' - C2' ANGL. DEV. = -6.4 DEGREES
REMARK 500 1 DT B 6 O4' - C1' - N1 ANGL. DEV. = 1.9 DEGREES
REMARK 500 1 DT B 7 C4' - C3' - O3' ANGL. DEV. = 13.4 DEGREES
REMARK 500 1 DT B 8 C6 - C5 - C7 ANGL. DEV. = -4.2 DEGREES
REMARK 500 1 DG B 9 C5' - C4' - C3' ANGL. DEV. = 7.5 DEGREES
REMARK 500 1 DG B 9 C4' - C3' - C2' ANGL. DEV. = -4.7 DEGREES
REMARK 500 1 DG B 10 C3' - C2' - C1' ANGL. DEV. = -8.5 DEGREES
REMARK 500 1 DG B 10 O4' - C1' - C2' ANGL. DEV. = -5.3 DEGREES
REMARK 500 1 DG B 10 C3' - O3' - P ANGL. DEV. = 7.4 DEGREES
REMARK 500 1 DC B 12 C4' - C3' - C2' ANGL. DEV. = -5.3 DEGREES
REMARK 500 1 DC B 12 C3' - C2' - C1' ANGL. DEV. = -5.3 DEGREES
REMARK 500 2 DG A 1 C3' - C2' - C1' ANGL. DEV. = -7.0 DEGREES
REMARK 500 2 DG A 1 O4' - C1' - N9 ANGL. DEV. = 3.6 DEGREES
REMARK 500 2 DG A 2 C4' - C3' - C2' ANGL. DEV. = -4.2 DEGREES
REMARK 500 2 DG A 2 C3' - C2' - C1' ANGL. DEV. = -6.9 DEGREES
REMARK 500 2 DG A 2 O4' - C1' - N9 ANGL. DEV. = 6.5 DEGREES
REMARK 500 2 DG A 3 C5' - C4' - C3' ANGL. DEV. = 7.3 DEGREES
REMARK 500 2 DG A 3 N9 - C4 - C5 ANGL. DEV. = 2.5 DEGREES
REMARK 500 2 DG A 3 C8 - N9 - C1' ANGL. DEV. = 8.6 DEGREES
REMARK 500 2 DG A 3 C4 - N9 - C1' ANGL. DEV. = -8.0 DEGREES
REMARK 500 2 DG A 3 C3' - O3' - P ANGL. DEV. = 8.2 DEGREES
REMARK 500
REMARK 500 THIS ENTRY HAS 368 ANGLE DEVIATIONS.
REMARK 500
REMARK 500 REMARK: NULL
DBREF 1A8W A 1 12 PDB 1A8W 1A8W 1 12
DBREF 1A8W B 1 12 PDB 1A8W 1A8W 1 12
SEQRES 1 A 12 DG DG DG DC DT DT DT DT DG DG DG DC
SEQRES 1 B 12 DG DG DG DC DT DT DT DT DG DG DG DC
CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 1.000000 0.000000 0.000000 0.00000
SCALE2 0.000000 1.000000 0.000000 0.00000
SCALE3 0.000000 0.000000 1.000000 0.00000
MODEL 1
Complete list - 16 20 Bytes