Complet list of 4ait hssp file
Complete list of 4ait.hssp file
HSSP HOMOLOGY DERIVED SECONDARY STRUCTURE OF PROTEINS , VERSION 2.0 2011
PDBID 4AIT
THRESHOLD according to: t(L)=(290.15 * L ** -0.562) + 5
REFERENCE Sander C., Schneider R. : Database of homology-derived protein structures. Proteins, 9:56-68 (1991).
CONTACT Maintained at http://www.cmbi.ru.nl/ by Maarten L. Hekkelman
DATE file generated on 2014-01-08
HEADER ALPHA-AMYLASE INHIBITOR 1991-04-15 4AIT
COMPND TENDAMISTAT
SOURCE Streptomyces tendae
AUTHOR Billeter, M.; Schaumann, T.; Braun, W.; Wuthrich, K.
SEQLENGTH 74
NCHAIN 1 chain(s) in 4AIT data set
NALIGN 9
NOTATION : ID: EMBL/SWISSPROT identifier of the aligned (homologous) protein
NOTATION : STRID: if the 3-D structure of the aligned protein is known, then STRID is the Protein Data Bank identifier as taken
NOTATION : from the database reference or DR-line of the EMBL/SWISSPROT entry
NOTATION : %IDE: percentage of residue identity of the alignment
NOTATION : %SIM (%WSIM): (weighted) similarity of the alignment
NOTATION : IFIR/ILAS: first and last residue of the alignment in the test sequence
NOTATION : JFIR/JLAS: first and last residue of the alignment in the alignend protein
NOTATION : LALI: length of the alignment excluding insertions and deletions
NOTATION : NGAP: number of insertions and deletions in the alignment
NOTATION : LGAP: total length of all insertions and deletions
NOTATION : LSEQ2: length of the entire sequence of the aligned protein
NOTATION : ACCNUM: SwissProt accession number
NOTATION : PROTEIN: one-line description of aligned protein
NOTATION : SeqNo,PDBNo,AA,STRUCTURE,BP1,BP2,ACC: sequential and PDB residue numbers, amino acid (lower case = Cys), secondary
NOTATION : structure, bridge partners, solvent exposure as in DSSP (Kabsch and Sander, Biopolymers 22, 2577-2637(1983)
NOTATION : VAR: sequence variability on a scale of 0-100 as derived from the NALIGN alignments
NOTATION : pair of lower case characters (AvaK) in the alignend sequence bracket a point of insertion in this sequence
NOTATION : dots (....) in the alignend sequence indicate points of deletion in this sequence
NOTATION : SEQUENCE PROFILE: relative frequency of an amino acid type at each position. Asx and Glx are in their
NOTATION : acid/amide form in proportion to their database frequencies
NOTATION : NOCC: number of aligned sequences spanning this position (including the test sequence)
NOTATION : NDEL: number of sequences with a deletion in the test protein at this position
NOTATION : NINS: number of sequences with an insertion in the test protein at this position
NOTATION : ENTROPY: entropy measure of sequence variability at this position
NOTATION : RELENT: relative entropy, i.e. entropy normalized to the range 0-100
NOTATION : WEIGHT: conservation weight
## PROTEINS : identifier and alignment statistics
NR. ID STRID %IDE %WSIM IFIR ILAS JFIR JLAS LALI NGAP LGAP LSEQ2 ACCNUM PROTEIN
1 : IAA_STRTE 1OK0 0.99 1.00 1 74 31 104 74 0 0 104 P01092 Alpha-amylase inhibitor HOE-467A OS=Streptomyces tendae PE=1 SV=2
2 : IAA1_STROI 0.57 0.80 5 73 2 70 69 0 0 73 P09921 Alpha-amylase inhibitor Paim-1 OS=Streptomyces olivaceoviridis PE=1 SV=1
3 : IAA2_STROI 0.54 0.78 2 73 1 72 72 0 0 75 P20596 Alpha-amylase inhibitor Paim-2 OS=Streptomyces olivaceoviridis PE=1 SV=1
4 : Q9LBQ8_STRCK 0.53 0.78 1 73 31 103 73 0 0 106 Q9LBQ8 Proteinaceous alpha-amylase inhibitor Paim OS=Streptomyces corchorusii GN=paim PE=4 SV=1
5 : H1Q820_9ACTO 0.44 0.67 2 58 33 89 57 0 0 112 H1Q820 Alpha-amylase inhibitor Scaim OS=Streptomyces coelicoflavus ZG0656 GN=scaim PE=4 SV=1
6 : D6AL78_STRFL 0.39 0.65 2 58 8 64 57 0 0 83 D6AL78 Alpha-amylase inhibitor AI-409 OS=Streptomyces roseosporus NRRL 15998 GN=SSGG_06758 PE=4 SV=1
7 : Q53356_9ACTO 0.39 0.72 2 58 33 89 57 0 0 110 Q53356 Proteinaceous alpha-amylase inhibitor OS=Streptomyces nitrosporeus PE=4 SV=1
8 : Q7M0U7_STRCX 0.39 0.60 2 73 1 71 72 1 1 78 Q7M0U7 Alpha-amylase inhibitor AI-409 OS=Streptomyces chartreusis PE=1 SV=1
9 : IAA_STRRO 2KER 0.32 0.54 3 73 1 70 71 1 1 76 P07512 Alpha-amylase inhibitor Z-2685 OS=Streptomyces rochei PE=1 SV=1
## ALIGNMENTS 1 - 9
SeqNo PDBNo AA STRUCTURE BP1 BP2 ACC NOCC VAR ....:....1....:....2....:....3....:....4....:....5....:....6....:....7
1 1 A D 0 0 28 3 52 D Q
2 2 A T > + 0 0 93 8 63 T SSASAA
3 3 A T T 3 S+ 0 0 115 9 68 T DDPAATA
4 4 A V T 3 S+ 0 0 157 9 71 V AAASTVT
5 5 A S S < S- 0 0 21 10 60 SSSSQDGGG
6 6 A E E -A 72 0A 87 10 56 EEEESAAES
7 7 A P E -A 71 0A 68 10 0 PPPPPPPPP
8 8 A A - 0 0 23 10 19 AAAAAAAAV
9 9 A P > - 0 0 66 10 14 PPPPPPPPA
10 10 A S T 3 S+ 0 0 116 10 65 SAAAAEAQE
11 11 A a T 3 S+ 0 0 39 10 0 CCCCCCCCC
12 12 A V E < S-E 25 0B 5 10 0 VVVVVVVVV
13 13 A T E -E 24 0B 63 10 82 TVVVEVEEE
14 14 A L E -E 23 0B 59 10 81 LMMMYYSYY
15 15 A Y E -E 22 0B 131 10 21 YYYYYHFFF
16 16 A Q E +E 21 0B 68 10 29 QEEEQQQQQ
17 17 A S - 0 0 16 10 12 SSSSSGSSS
18 18 A W S S+ 0 0 139 10 0 WWWWWWWWW
19 19 A R S S+ 0 0 139 10 0 RRRRRRRRR
20 20 A Y - 0 0 58 10 0 YYYYYYYYY
21 21 A S E -EF 16 57B 0 10 34 STTTTTTTT
22 22 A Q E -EF 15 55B 39 10 65 QTTTDDDDD
23 23 A A E -EF 14 54B 0 10 61 AAAAVVVVV
24 24 A D E -EF 13 53B 43 10 90 DAAAVVHHH
25 25 A N E +EF 12 52B 0 10 0 NNNNNNNNN
26 26 A G + 0 0 53 10 43 GNNNNGGGG
27 27 A a S S- 0 0 32 10 0 CCCCCCCCC
28 28 A A S S+ 0 0 80 10 35 AAAAAASLA
29 29 A E S S- 0 0 121 10 61 QDDDEIEVD
30 30 A T + 0 0 82 10 41 TTTTTGTAA
31 31 A V E -B 48 0A 16 10 0 VVVVVVVVV
32 32 A T E -B 47 0A 47 10 52 TSSSAASSS
33 33 A V E -BC 46 72A 0 10 0 VVVVVVVVV
34 34 A K E - C 0 71A 28 10 70 KSSSTTTTT
35 35 A V E - C 0 70A 0 10 0 VVVVVVVVV
36 36 A V E -DC 42 69A 0 10 78 VAAAEEEEE
37 37 A Y E > - C 0 67A 2 10 0 YYYYYYYYY
38 38 A E T 3 S+ 0 0 95 10 76 EQQQTTTTT
39 39 A D T 3 S- 0 0 83 10 45 DDDDNNNNH
40 40 A D S < S+ 0 0 109 10 23 DGGGGGGGG
41 41 A T - 0 0 44 10 77 TAAAQQQQQ
42 42 A E B -D 36 0A 93 10 112 ETTTDEWWW
43 43 A G - 0 0 18 10 37 GGGGAAAAA
44 44 A L - 0 0 95 10 51 LPPPPPPPP
45 45 A b + 0 0 71 10 0 CCCCCCCCC
46 46 A Y E -B 33 0A 97 10 109 YAAARRVRR
47 47 A A E -B 32 0A 66 10 70 ATTTVITVV
48 48 A V E -B 31 0A 2 10 34 VLLLILIII
49 49 A A > - 0 0 28 10 71 APPPAGQEE
50 50 A P T 3 S+ 0 0 59 10 0 PPPPPPPPP
51 51 A G T 3 S+ 0 0 73 10 10 GGGGGGDGG
52 52 A Q E < -F 25 0B 95 10 63 QAAAAEGGG
53 53 A I E +F 24 0B 60 9 99 IVVVWRWR.
54 54 A T E -F 23 0B 50 10 72 TTTTAAAAW
55 55 A T E +F 22 0B 63 10 16 TTTTTTTTA
56 56 A V E - 0 0B 0 10 69 VVVVFFFFT
57 57 A G E S-F 21 0B 16 10 60 GGGGAAAAF
58 58 A D - 0 0 95 9 55 DEEEGGG.A
59 59 A G >>> - 0 0 0 7 0 GGGG GG
60 60 A Y T 345S+ 0 0 112 7 0 YYYY YY
61 61 A I T 345S- 0 0 101 7 100 ILLL GG
62 62 A G T <45S+ 0 0 40 7 49 GGGG TT
63 63 A S T <5S+ 0 0 73 7 69 SEEE ND
64 64 A H S