Complet list of 2i1t hssp file
Complete list of 2i1t.hssp file
HSSP HOMOLOGY DERIVED SECONDARY STRUCTURE OF PROTEINS , VERSION 2.0 2011
PDBID 2I1T
THRESHOLD according to: t(L)=(290.15 * L ** -0.562) + 5
REFERENCE Sander C., Schneider R. : Database of homology-derived protein structures. Proteins, 9:56-68 (1991).
CONTACT Maintained at http://www.cmbi.ru.nl/ by Maarten L. Hekkelman
DATE file generated on 2014-05-20
HEADER TOXIN 15-AUG-06 2I1T
COMPND MOL_ID: 1; MOLECULE: JINGZHAOTOXIN-3; CHAIN: A; SYNONYM: JINGZHAOTOXIN
SOURCE MOL_ID: 1; ORGANISM_SCIENTIFIC: CHILOBRACHYS JINGZHAO; ORGANISM_TAXID:
AUTHOR Z.LIAO,K.PENG,S.LIANG
DBREF 2I1T A 1 36 UNP P62520 JZTX3_CHIJI 28 63
SEQLENGTH 36
NCHAIN 1 chain(s) in 2I1T data set
NALIGN 19
NOTATION : ID: EMBL/SWISSPROT identifier of the aligned (homologous) protein
NOTATION : STRID: if the 3-D structure of the aligned protein is known, then STRID is the Protein Data Bank identifier as taken
NOTATION : from the database reference or DR-line of the EMBL/SWISSPROT entry
NOTATION : %IDE: percentage of residue identity of the alignment
NOTATION : %SIM (%WSIM): (weighted) similarity of the alignment
NOTATION : IFIR/ILAS: first and last residue of the alignment in the test sequence
NOTATION : JFIR/JLAS: first and last residue of the alignment in the alignend protein
NOTATION : LALI: length of the alignment excluding insertions and deletions
NOTATION : NGAP: number of insertions and deletions in the alignment
NOTATION : LGAP: total length of all insertions and deletions
NOTATION : LSEQ2: length of the entire sequence of the aligned protein
NOTATION : ACCNUM: SwissProt accession number
NOTATION : PROTEIN: one-line description of aligned protein
NOTATION : SeqNo,PDBNo,AA,STRUCTURE,BP1,BP2,ACC: sequential and PDB residue numbers, amino acid (lower case = Cys), secondary
NOTATION : structure, bridge partners, solvent exposure as in DSSP (Kabsch and Sander, Biopolymers 22, 2577-2637(1983)
NOTATION : VAR: sequence variability on a scale of 0-100 as derived from the NALIGN alignments
NOTATION : pair of lower case characters (AvaK) in the alignend sequence bracket a point of insertion in this sequence
NOTATION : dots (....) in the alignend sequence indicate points of deletion in this sequence
NOTATION : SEQUENCE PROFILE: relative frequency of an amino acid type at each position. Asx and Glx are in their
NOTATION : acid/amide form in proportion to their database frequencies
NOTATION : NOCC: number of aligned sequences spanning this position (including the test sequence)
NOTATION : NDEL: number of sequences with a deletion in the test protein at this position
NOTATION : NINS: number of sequences with an insertion in the test protein at this position
NOTATION : ENTROPY: entropy measure of sequence variability at this position
NOTATION : RELENT: relative entropy, i.e. entropy normalized to the range 0-100
NOTATION : WEIGHT: conservation weight
## PROTEINS : identifier and alignment statistics
NR. ID STRID %IDE %WSIM IFIR ILAS JFIR JLAS LALI NGAP LGAP LSEQ2 ACCNUM PROTEIN
1 : JZTX3_CHIGU 2I1T 1.00 1.00 1 36 28 63 36 0 0 63 P62520 Beta-theraphotoxin-Cj1a OS=Chilobrachys guangxiensis PE=1 SV=1
2 : JZ627_CHIGU 0.68 0.79 4 31 2 29 28 0 0 35 P0CH52 Jingzhaotoxin F6-27.63 OS=Chilobrachys guangxiensis PE=1 SV=1
3 : JZT4A_CHIGU 0.67 0.69 1 36 28 63 36 0 0 63 B1P1D5 Kappa-theraphotoxin-Cj3a OS=Chilobrachys guangxiensis PE=2 SV=1
4 : JZT4B_CHIGU 0.67 0.69 1 36 28 63 36 0 0 63 B1P1D6 Kappa-theraphotoxin-Cj3a OS=Chilobrachys guangxiensis PE=2 SV=1
5 : TXG1D_CHIGU 0.67 0.69 1 36 1 36 36 0 0 36 P84836 Kappa-theraphotoxin-Pg1b OS=Chilobrachys guangxiensis PE=1 SV=1
6 : TXG1E_CHIGU 2WH9 0.64 0.69 1 36 1 36 36 0 0 36 P84835 Kappa-theraphotoxin-Pg1a OS=Chilobrachys guangxiensis PE=1 SV=1
7 : JZ13A_CHIGU 0.62 0.71 3 36 30 63 34 0 0 66 B1P1C9 U10-theraphotoxin-Cj1a OS=Chilobrachys guangxiensis PE=1 SV=1
8 : JZ13B_CHIGU 0.62 0.71 3 36 30 63 34 0 0 66 B1P1D0 U10-theraphotoxin-Cj1a OS=Chilobrachys guangxiensis PE=2 SV=1
9 : JZ13C_CHIGU 0.62 0.71 3 36 30 63 34 0 0 66 B1P1C8 U10-theraphotoxin-Cj1a OS=Chilobrachys guangxiensis PE=2 SV=1
10 : JZT1A_CHIGU 0.58 0.61 1 31 28 58 31 0 0 62 P83974 Delta-theraphotoxin-Cj1a OS=Chilobrachys guangxiensis GN=JZTX-I PE=1 SV=2
11 : JZT1B_CHIGU 0.58 0.61 1 31 28 58 31 0 0 62 B1P1B7 Delta-theraphotoxin-Cj1a OS=Chilobrachys guangxiensis PE=1 SV=1
12 : JZT1C_CHIGU 0.58 0.61 1 31 28 58 31 0 0 62 B1P1B8 Delta-theraphotoxin-Cj1a OS=Chilobrachys guangxiensis PE=1 SV=1
13 : H1A03_HAPHA 0.52 0.55 3 33 49 79 31 0 0 83 D2Y1X8 Mu-theraphotoxin-Hhn2b OS=Haplopelma hainanum PE=1 SV=1
14 : JZ14B_CHIGU 0.50 0.57 1 28 28 53 28 1 2 62 B1P1C1 U8-theraphotoxin-Cj1a OS=Chilobrachys guangxiensis PE=2 SV=1
15 : H1A01_HAPHA 1NIX 0.48 0.55 1 33 47 79 33 0 0 83 D2Y1X6 Mu-theraphotoxin-Hhn2b OS=Haplopelma hainanum PE=1 SV=1
16 : H1A02_HAPHA 0.48 0.55 1 33 47 79 33 0 0 83 D2Y1X7 Mu-theraphotoxin-Hhn2b OS=Haplopelma hainanum PE=1 SV=1
17 : JZT10_CHIGU 0.48 0.52 4 36 31 63 33 0 0 66 B1P1C2 U1-theraphotoxin-Cj1b OS=Chilobrachys guangxiensis PE=2 SV=1
18 : M5AY63_GRARO 0.47 0.62 3 36 30 62 34 1 1 63 M5AY63 VSTx1 OS=Grammostola rosea PE=3 SV=1
19 : VSTX1_GRARO 1S6X 0.47 0.59 3 36 1 33 34 1 1 34 P60980 Kappa-theraphotoxin-Gr3a OS=Grammostola rosea PE=1 SV=1
## ALIGNMENTS 1 - 19
SeqNo PDBNo AA STRUCTURE BP1 BP2 ACC NOCC VAR ....:....1....:....2....:....3....:....4....:....5....:....6....:....7
1 1 A D 0 0 190 12 19 D DDDE DDD EEE
2 2 A G - 0 0 76 12 79 G GGGG RRR RRR
3 3 A E - 0 0 130 18 46 E EEEEQQQAAAEGEE EE
4 4 A a - 0 0 71 20 0 CCCCCCCCCCCCCCCCCCC
5 5 A G - 0 0 15 20 49 GQGGGGGGGGGGKQKKGGG
6 6 A G - 0 0 19 20 60 GGGGGGEEEQQQGKGGGKK
7 7 A F S S+ 0 0 132 20 3 FYFFFFFFFFFFFFFFLFF
8 8 A W S S+ 0 0 146 20 95 WMWWWWMMMWWWGFGGMMM
9 9 A W E -A 31 0A 148 20 45 WRWWWWWWWWWWKWKKAWW
10 10 A K E +A 30 0A 183 20 46 KKKKKKKKKKKKSTSSGKK
11 11 A b - 0 0 13 20 0 CCCCCCCCCCCCCCCCCCC
12 12 A G S S- 0 0 33 19 53 GGGGGGGGGGGGVHVVGK.
13 13 A R S S- 0 0 185 20 81 RRSSSSAAAEEEPPPPGNK
14 14 A G S S+ 0 0 44 20 31 GDGGGGGGGGGGGGGGKSN
15 15 A K + 0 0 156 20 33 KKKKKKKKKKKKKQKKSNS
16 16 A P S S- 0 0 53 20 54 PPPPPPPPPPPPNPNNTDN
17 17 A P - 0 0 68 19 79 PPAAAATTTPPPEPEEF.D
18 18 A c - 0 0 30 20 0 CCCCCCCCCCCCCCCCCCC
19 19 A a > - 0 0 20 20 0 CCCCCCCCCCCCCCCCCCC
20 20 A K T 3 S+ 0 0 213 20 67 KKPPPPSSSAAASSSSSKK
21 21 A G T 3 S+ 0 0 58 20 62 GKKKKKGGGNNNGGGGGDD
22 22 A Y E < -B 33 0A 82 20 27 YLYYYYYYYFFFYLYYYLL
23 23 A A E -B 32 0A 34 20 69 AEVVVVDDDAAAAAAANVV
24 24 A b E -B 31 0A 31 20 0 CCCCCCCCCCCCCCCCCCC
25 25 A S E >> -B 30 0A 25 19 50 SSSSSSSSSKKKN.NNSSS
26 26 A K T 45S+ 0 0 132 19 77 KKPPPPPPPIIIS.SSPSS
27 27 A T T 45S+ 0 0 125 20 75 TTKKKKTTTGGGRTRRTRR
28 28 A W T 45S- 0 0 126 20 71 WWWWWWWWWLLLDWDDWWW
29 29 A G T <5S+ 0 0 29 19 91 GRGGGGKKKYYYK KKKKK
30 30 A W E