Complet list of 2hgc hssp file
Complete list of 2hgc.hssp file
HSSP HOMOLOGY DERIVED SECONDARY STRUCTURE OF PROTEINS , VERSION 2.0 2011
PDBID 2HGC
THRESHOLD according to: t(L)=(290.15 * L ** -0.562) + 5
REFERENCE Sander C., Schneider R. : Database of homology-derived protein structures. Proteins, 9:56-68 (1991).
CONTACT Maintained at http://www.cmbi.ru.nl/ by Maarten L. Hekkelman
DATE file generated on 2014-05-20
HEADER STRUCTURAL GENOMICS, UNKNOWN FUNCTION 26-JUN-06 2HGC
COMPND MOL_ID: 1; MOLECULE: YJCQ PROTEIN; CHAIN: A; ENGINEERED: YES
SOURCE MOL_ID: 1; ORGANISM_SCIENTIFIC: BACILLUS SUBTILIS; ORGANISM_TAXID: 142
AUTHOR P.ROSSI,J.R.CORT,C.K.HO,H.JANJUA,K.CUNNINGHAM,L.-C.MA, R.XIAO,J.LIU,M.
DBREF 2HGC A 1 94 UNP O31639 O31639_BACSU 1 94
SEQLENGTH 78
NCHAIN 1 chain(s) in 2HGC data set
NALIGN 49
NOTATION : ID: EMBL/SWISSPROT identifier of the aligned (homologous) protein
NOTATION : STRID: if the 3-D structure of the aligned protein is known, then STRID is the Protein Data Bank identifier as taken
NOTATION : from the database reference or DR-line of the EMBL/SWISSPROT entry
NOTATION : %IDE: percentage of residue identity of the alignment
NOTATION : %SIM (%WSIM): (weighted) similarity of the alignment
NOTATION : IFIR/ILAS: first and last residue of the alignment in the test sequence
NOTATION : JFIR/JLAS: first and last residue of the alignment in the alignend protein
NOTATION : LALI: length of the alignment excluding insertions and deletions
NOTATION : NGAP: number of insertions and deletions in the alignment
NOTATION : LGAP: total length of all insertions and deletions
NOTATION : LSEQ2: length of the entire sequence of the aligned protein
NOTATION : ACCNUM: SwissProt accession number
NOTATION : PROTEIN: one-line description of aligned protein
NOTATION : SeqNo,PDBNo,AA,STRUCTURE,BP1,BP2,ACC: sequential and PDB residue numbers, amino acid (lower case = Cys), secondary
NOTATION : structure, bridge partners, solvent exposure as in DSSP (Kabsch and Sander, Biopolymers 22, 2577-2637(1983)
NOTATION : VAR: sequence variability on a scale of 0-100 as derived from the NALIGN alignments
NOTATION : pair of lower case characters (AvaK) in the alignend sequence bracket a point of insertion in this sequence
NOTATION : dots (....) in the alignend sequence indicate points of deletion in this sequence
NOTATION : SEQUENCE PROFILE: relative frequency of an amino acid type at each position. Asx and Glx are in their
NOTATION : acid/amide form in proportion to their database frequencies
NOTATION : NOCC: number of aligned sequences spanning this position (including the test sequence)
NOTATION : NDEL: number of sequences with a deletion in the test protein at this position
NOTATION : NINS: number of sequences with an insertion in the test protein at this position
NOTATION : ENTROPY: entropy measure of sequence variability at this position
NOTATION : RELENT: relative entropy, i.e. entropy normalized to the range 0-100
NOTATION : WEIGHT: conservation weight
## PROTEINS : identifier and alignment statistics
NR. ID STRID %IDE %WSIM IFIR ILAS JFIR JLAS LALI NGAP LGAP LSEQ2 ACCNUM PROTEIN
1 : J7JM04_BACIU 1.00 1.00 1 78 10 87 78 0 0 99 J7JM04 YjcQ OS=Bacillus subtilis QB928 GN=B657_11950 PE=4 SV=1
2 : L8AEU3_BACIU 1.00 1.00 1 78 5 82 78 0 0 94 L8AEU3 Uncharacterized protein OS=Bacillus subtilis BEST7613 GN=yjcQ PE=4 SV=1
3 : M1U0R7_BACIU 1.00 1.00 1 78 5 82 78 0 0 94 M1U0R7 YjcQ OS=Bacillus subtilis subsp. subtilis 6051-HGW GN=yjcQ PE=4 SV=1
4 : M2W6Y7_BACIU 1.00 1.00 1 78 5 82 78 0 0 94 M2W6Y7 Uncharacterized protein OS=Bacillus subtilis MB73/2 GN=BS732_1943 PE=4 SV=1
5 : N0DA53_BACIU 1.00 1.00 1 78 5 82 78 0 0 94 N0DA53 Uncharacterized protein OS=Bacillus subtilis BEST7003 GN=yjcQ PE=4 SV=1
6 : V5MQV0_BACIU 1.00 1.00 1 78 5 82 78 0 0 94 V5MQV0 Uncharacterized protein yjcQ OS=Bacillus subtilis PY79 GN=U712_06185 PE=4 SV=1
7 : YJCQ_BACSU 2HGC 1.00 1.00 1 78 5 82 78 0 0 94 O31639 Uncharacterized protein YjcQ OS=Bacillus subtilis (strain 168) GN=yjcQ PE=1 SV=1
8 : T0DX66_CLOSO 0.60 0.78 1 78 5 81 78 1 1 93 T0DX66 Uncharacterized protein OS=Clostridium sordellii VPI 9048 GN=H476_1021 PE=4 SV=1
9 : D4RKI8_ENTFC 0.49 0.70 1 78 7 86 81 3 4 98 D4RKI8 Uncharacterized protein OS=Enterococcus faecium E1679 GN=EfmE1679_2456 PE=4 SV=1
10 : J7AU19_ENTFC 0.49 0.70 1 78 7 86 81 3 4 98 J7AU19 YjcQ protein OS=Enterococcus faecium ERV69 GN=HMPREF1368_00030 PE=4 SV=1
11 : J7AVY6_ENTFC 0.49 0.70 1 78 7 86 81 3 4 98 J7AVY6 YjcQ protein OS=Enterococcus faecium ERV38 GN=HMPREF1367_01724 PE=4 SV=1
12 : J7BJD6_ENTFC 0.49 0.70 1 78 7 86 81 3 4 98 J7BJD6 YjcQ protein OS=Enterococcus faecium ERV1 GN=HMPREF1361_02832 PE=4 SV=1
13 : L2J6M4_ENTFC 0.49 0.70 1 78 7 86 81 3 4 98 L2J6M4 Uncharacterized protein OS=Enterococcus faecium EnGen0011 GN=OGU_04331 PE=4 SV=1
14 : L2LNP2_ENTFC 0.49 0.70 1 78 7 86 81 3 4 98 L2LNP2 Uncharacterized protein OS=Enterococcus faecium EnGen0028 GN=OIG_04205 PE=4 SV=1
15 : R1X7T1_ENTFC 0.49 0.70 1 78 7 86 81 3 4 98 R1X7T1 Uncharacterized protein OS=Enterococcus faecium EnGen0130 GN=SEU_01315 PE=4 SV=1
16 : R2AIL9_ENTFC 0.49 0.70 1 78 7 86 81 3 4 98 R2AIL9 Uncharacterized protein OS=Enterococcus faecium EnGen0162 GN=SK7_01815 PE=4 SV=1
17 : R4AKL1_ENTFC 0.49 0.70 1 78 7 86 81 3 4 98 R4AKL1 Uncharacterized protein OS=Enterococcus faecium EnGen0192 GN=SSM_00455 PE=4 SV=1
18 : X1W572_ENTFC 0.49 0.70 1 78 7 86 81 3 4 98 X1W572 Uncharacterized protein OS=Enterococcus faecium C68 GN=EFXG_02667 PE=4 SV=1
19 : B8I8U0_CLOCE 0.35 0.63 1 78 8 84 78 1 1 97 B8I8U0 Uncharacterized protein OS=Clostridium cellulolyticum (strain ATCC 35319 / DSM 5812 / JCM 6584 / H10) GN=Ccel_2978 PE=4 SV=1
20 : K6DM73_9BACI 0.35 0.61 2 73 6 73 72 2 4 74 K6DM73 Uncharacterized protein OS=Bacillus bataviensis LMG 21833 GN=BABA_10436 PE=4 SV=1
21 : C9BRV5_ENTFC 0.33 0.58 1 78 5 79 78 1 3 94 C9BRV5 Uncharacterized protein OS=Enterococcus faecium 1,231,502 GN=EFQG_05055 PE=4 SV=1
22 : C9CGH5_ENTFC 0.33 0.58 1 78 5 79 78 1 3 94 C9CGH5 YjcQ protein OS=Enterococcus faecium 1,230,933 GN=EFPG_05205 PE=4 SV=1
23 : D4RV24_ENTFC 0.33 0.58 1 78 5 79 78 1 3 94 D4RV24 Uncharacterized protein OS=Enterococcus faecium U0317 GN=EfmU0317_2830 PE=4 SV=1
24 : F1YZ94_9STRE 0.33 0.58 1 78 5 79 78 1 3 94 F1YZ94 YjcQ protein OS=Streptococcus parauberis NCFD 2020 GN=SPB_0422 PE=4 SV=1
25 : J5Z1J8_ENTFC 0.33 0.58 1 78 5 79 78 1 3 94 J5Z1J8 YjcQ protein OS=Enterococcus faecium P1986 GN=HMPREF1375_01607 PE=4 SV=1
26 : J6EYJ0_ENTFC 0.33 0.58 1 78 5 79 78 1 3 94 J6EYJ0 YjcQ protein OS=Enterococcus faecium C621 GN=HMPREF1358_03128 PE=4 SV=1
27 : J6RGN6_ENTFC 0.33 0.58 1 78 5 79 78 1 3 94 J6RGN6 YjcQ protein OS=Enterococcus faecium P1140 GN=HMPREF1373_01589 PE=4 SV=1
28 : J6TYV6_ENTFC 0.33 0.58 1 78 5 79 78 1 3 94 J6TYV6 YjcQ protein OS=Enterococcus faecium ERV165 GN=HMPREF1364_00419 PE=4 SV=1
29 : J6UTV6_ENTFC 0.33 0.58 1 78 5 79 78 1 3 94 J6UTV6 YjcQ protein OS=Enterococcus faecium E422 GN=HMPREF1360_02122 PE=4 SV=1
30 : J6X359_ENTFC 0.33 0.58 1 78 5 79 78 1 3 94 J6X359 YjcQ protein OS=Enterococcus faecium S447 GN=HMPREF1382_02256 PE=4 SV=1
31 : J6XK32_ENTFC 0.33 0.58 1 78 5 79 78 1 3 94 J6XK32 YjcQ protein OS=Enterococcus faecium R496 GN=HMPREF1378_03208 PE=4 SV=1
32 : J6XLS8_ENTFC 0.33 0.58 1 78 5 79 78 1 3 94 J6XLS8 YjcQ protein OS=Enterococcus faecium R499 GN=HMPREF1380_01984 PE=4 SV=1
33 : J6YGH2_ENTFC 0.33 0.58 1 78 5 79 78 1 3 94 J6YGH2 YjcQ protein OS=Enterococcus faecium R446 GN=HMPREF1376_02295 PE=4 SV=1
34 : J7AYK5_ENTFC 0.33 0.58 1 78 5 79 78 1 3 94 J7AYK5 YjcQ protein OS=Enterococcus faecium ERV168 GN=HMPREF1365_02859 PE=4 SV=1
35 : J7BC53_ENTFC 0.33 0.58 1 78 5 79 78 1 3 94 J7BC53 YjcQ protein OS=Enterococcus faecium ERV161 GN=HMPREF1363_02498 PE=4 SV=1
36 : J7BF30_ENTFC 0.33 0.58 1 78 5 79 78 1 3 94 J7BF30 YjcQ protein OS=Enterococcus faecium ERV102 GN=HMPREF1362_02183 PE=4 SV=1
37 : J7C5E8_ENTFC 0.33 0.58 1 78 5 79 78 1 3 94 J7C5E8 YjcQ protein OS=Enterococcus faecium 515 GN=HMPREF1355_02604 PE=4 SV=1
38 : L2GZV4_ENTFC 0.33 0.58 1 78 5 79 78 1 3 94 L2GZV4 Uncharacterized protein OS=Enterococcus faecium EnGen0005 GN=OG9_04753 PE=4 SV=1
39 : L2HEL8_ENTFC 0.33 0.58 1 78 5 79 78 1 3 94 L2HEL8 Uncharacterized protein OS=Enterococcus faecium EnGen0010 GN=OGC_04737 PE=4 SV=1
40 : L2HML4_ENTFC 0.33 0.58 1 78 5 79 78 1 3 94 L2HML4 Uncharacterized protein OS=Enterococcus faecium EnGen0022 GN=OGE_04805 PE=4 SV=1
41 : L2KLL6_ENTFC 0.33 0.58 1 78 5 79 78 1 3 94 L2KLL6 Uncharacterized protein OS=Enterococcus faecium EnGen0001 GN=OI9_05139 PE=4 SV=1
42 : L2RCI3_ENTFC 0.33 0.58 1 78 5 79 78 1 3 94 L2RCI3 Uncharacterized protein OS=Enterococcus faecium EnGen0048 GN=OKY_04807 PE=4 SV=1
43 : L2SRZ6_ENTFC 0.33 0.58 1 78 5 79 78 1 3 94 L2SRZ6 Uncharacterized protein OS=Enterococcus faecium EnGen0049 GN=OMC_05525 PE=4 SV=1
44 : R1XQJ2_ENTFC 0.33 0.58 1 78 5 79 78 1 3 94 R1XQJ2 Uncharacterized protein OS=Enterococcus faecium EnGen0136 GN=SGC_02451 PE=4 SV=1
45 : R2C6K3_ENTFC 0.33 0.58 1 78 5 79 78 1 3 91 R2C6K3 Uncharacterized protein OS=Enterococcus faecium EnGen0184 GN=SMS_02698 PE=4 SV=1
46 : R2CSX9_ENTFC 0.33 0.58 1 78 5 79 78 1 3 94 R2CSX9 Uncharacterized protein OS=Enterococcus faecium EnGen0179 GN=SMC_02925 PE=4 SV=1
47 : R4DLJ1_ENTFC 0.33 0.58 1 78 5 79 78 1 3 94 R4DLJ1 Uncharacterized protein OS=Enterococcus faecium EnGen0165 GN=SKE_02142 PE=4 SV=1
48 : S5W9P0_ENTFC 0.33 0.58 1 78 5 79 78 1 3 94 S5W9P0 YjcQ protein OS=Enterococcus faecium Aus0085 GN=yjcQ PE=4 SV=1
49 : S2RJ24_LACPA 0.32 0.62 2 77 11 87 79 4 5 103 S2RJ24 Uncharacterized protein OS=Lactobacillus paracasei subsp. paracasei Lpp71 GN=Lpp71_02341 PE=4 SV=1
## ALIGNMENTS 1 - 49
SeqNo PDBNo AA STRUCTURE BP1 BP2 ACC NOCC VAR ....:....1....:....2....:....3....:....4....:....5....:....6....:....7
1 5 A K 0 0 175 48 0 KKKKKKKKKKKKKKKKKKK KKKKKKKKKKKKKKKKKKKKKKKKKKKK
2 6 A L > + 0 0 64 50 26 LLLLLLLLIIIIIIIIIIILLLLLLLLLLLLLLLLLLLLLLLLLLLLLL
3 7 A R H > S+ 0 0 73 50 15 RRRRRRRRRRRRRRRRRRIRRRRRRRRRRRRRRRRRRRRRRRRRRRRRE
4 8 A Y H > S+ 0 0 17 50 5 YYYYYYYYYYYYYYYYYYYLYYYYYYYYYYYYYYYYYYYYYYYYYYYYY
5 9 A A H > S+ 0 0 3 50 9 AAAAAAAAAAAAAAAAAASSAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
6 10 A I H X S+ 0 0 0 50 3 IIIIIIIMIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII
7 11 A L H X S+ 0 0 0 50 0 LLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLL
8 12 A K H X S+ 0 0 18 50 3 KKKKKKKKKKKKKKKKKKKRKKKKKKKKKKKKKKKKKKKKKKKKKKKKK
9 13 A E H X S+ 0 0 27 50 102 EEEEEEEEEEEEEEEEEEEQLLLLLLLLLLLLLLLLLLLLLLLLLLLLN
10 14 A I H X S+ 0 0 8 50 101 IIIIIIIIIIIIIIIIIIVLRRRRRRRRRRRRRRRRRRRRRRRRRRRRI
11 15 A F H < S+ 0 0 101 50 86 FFFFFFFDEEEEEEEEEEEGDDDDDDDDDDDDDDDDDDDDDDDDDDDDA
12 16 A E H < S+ 0 0 119 50 45 EEEEEEEKNNNNNNNNNNSDEEEEEEEEEEEEEEEEEEEEEEEEEEEED
13 17 A G H < S- 0 0 46 50 88 GGGGGGGGGGGGGGGGGGGGKKKKKKKKKKKKKKKKKKKKKKKKKKKKG
14 18 A N < - 0 0 122 50 63 NNNNNNNNnnnnnnnnnnNKKKKKKKKKKKKKKKKKKKKKKKKKKKKKM
15 19 A T S S+ 0 0 15 48 78 TTTTTTTVeeeeeeeeeeK.NNNNNNNNNNNNNNNNNNNNNNNNNNNN.
16 20 A P + 0 0 67 50 59 PPPPPPPPNNNNNNNNNNNQPPPPPPPPPPPPPPPPPPPPPPPPPPPPP
17 21 A L - 0 0 28 50 26 LLLLLLLLLLLLLLLLLLLPFFFFFFFFFFFFFFFFFFFFFFFFFFFFY
18 22 A S > - 0 0 45 50 104 SSSSSSSSDDDDDDDDDDTKIIIIIIIIIIIIIIIIIIIIIIIIIIIIN
19 23 A E H >>S+ 0 0 51 50 86 EEEEEEEEFFFFFFFFFFHHEEEEEEEEEEEEEEEEEEEEEEEEEEEEA
20 24 A N H 45S+ 0 0 128 50 118 NNNNNNNQGGGGGGGGGGEELLLLLLLLLLLLLLLLLLLLLLLLLLLLK
21 25 A D H 45S+ 0 0 133 50 94 DDDDDDDDIIIIIIIIIIDDKKKKKKKKKKKKKKKKKKKKKKKKKKKKQ
22 26 A I H <5S- 0 0 10 50 116 IIIIIIIFLLLLLLLLLLYYGGGGGGGGGGGGGGGGGGGGGGGGGGGGI
23 27 A G T <5S+ 0 0 58 50 73 GGGGGGGNGGGGGGGGGGDNQQQQQQQQQQQQQQQQQQQQQQQQQQQQD
24 28 A V S - 0 0 80 50 83 TTTTTTTESSSSSSSSSSEDPPPPPPPPPPPPPPPPPPPPPPPPPPPPF
26 30 A E H > S+ 0 0 123 50 14 EEEEEEEEEEEEEEEEEEFEEEEEEEEEEEEEEEEEEEEEEEEEEEEEn
27 31 A D H > S+ 0 0 89 50 21 DDDDDDDDEEEEEEEEEEDEEEEEEEEEEEEEEEEEEEEEEEEEEEEEs
28 32 A Q H > S+ 0 0 99 50 59 QQQQQQQIQQQQQQQQQQLLDDDDDDDDDDDDDDDDDDDDDDDDDDDDD
29 33 A F H X S+ 0 0 15 50 49 FFFFFFFFFFFFFFFFFFFWIIIIIIIIIIIIIIIIIIIIIIIIIIIIV
30 34 A D H X S+ 0 0 24 50 117 DDDDDDDDNNNNNNNNNNWRLLLLLLLLLLLLLLLLLLLLLLLLLLLLS
31 35 A D H X S+ 0 0 80 50 36 DDDDDDDEDDDDDDDDDDDSEEEEEEEEEEEEEEEEEEEEEEEEEEEES
32 36 A A H X S+ 0 0 1 50 54 AAAAAAAAQQQQQQQQQQITQQQQQQQQQQQQQQQQQQQQQQQQQQQQA
33 37 A V H X S+ 0 0 2 50 90 VVVVVVVALLLLLLLLLLSATTTTTTTTTTTTTTTTTTTTTTTTTTTTI
34 38 A N H X S+ 0 0 45 50 71 NNNNNNNWNNNNNNNNNNISKKKKKKKKKKKKKKKKKKKKKKKKKKKKN
35 39 A F H X S+ 0 0 67 50 13 FFFFFFFFFFFFFFFFFFMFFFFFFFFFFFFFFFFFFFFFFFFFFFFFA
36 40 A L H X>S+ 0 0 1 50 3 LLLLLLLLLLLLLLLLLLILLLLLLLLLLLLLLLLLLLLLLLLLLLLLL
37 41 A K H <5S+ 0 0 87 50 79 KKKKKKKQKKKKKKKKKKRKSSSSSSSSSSSSSSSSSSSSSSSSSSSSI
38 42 A R H <5S+ 0 0 180 50 63 RRRRRRRRNNNNNNNNNNDDRRRRRRRRRRRRRRRRRRRRRRRRRRRRT
39 43 A E H <5S- 0 0 73 50 61 EEEEEEEEEEEEEEEEEEAENNNNNNNNNNNNNNNNNNNNNNNNNNNNS
40 44 A G T <5S+ 0 0 20 50 30 GGGGGGGGSSSSSSSSSSGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG
41 45 A Y S - 0 0 36 50 66 TTTTTTTTTTTTTTTTTTTTSSSSSSSSSSSSSSSSSSSSSSSSSSSST
63 67 A E H > S+ 0 0 153 50 101 EEEEEEEEEEEEEEEEEEFQLLLLLLLLLLLLLLLLLLLLLLLLLLLLD
64 68 A K H > S+ 0 0 116 50 65 KKKKKKKKKKKKKKKKKKEDEEEEEEEEEEEEEEEEEEEEEEEEEEEEK
65 69 A G H > S+ 0 0 0 50 0 GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG
66 70 A E H X S+ 0 0 51 50 8 EEEEEEEEEEEEEEEEEELEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE
67 71 A N H X S+ 0 0 86 50 90 NNNNNNNRIIIIIIIIIINEKKKKKKKKKKKKKKKKKKKKKKKKKKKKK
68 72 A Y H X S+ 0 0 69 50 3 YYYYYYYYFFFFFFFFFFYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYF
69 73 A L H X S+ 0 0 15 50 0 LLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLL
70 74 A K H < S+ 0 0 124 50 97 KKKKKKKKAAAAAAAAAAKKVVVVVVVVVVVVVVVVVVVVVVVVVVVVN
71 75 A E H >< S+ 0 0 156 50 8 EEEEEEEEEEEEEEEEEESEEEEEEEEEEEEEEEEEEEEEEEEEEEEED
72 76 A N H 3< S+ 0 0 48 50 4 NNNNNNNNNNNNNNNNNNNKNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
73 77 A G T 3< + 0 0 29 50 23 GGGGGGGSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
74 78 A T < + 0 0 132 49 65 TTTTTTTTTTTTTTTTTTA GGGGGGGGGGGGGGGGGGGGGGGGGGGGP
75 79 A W S S- 0 0 109 49 34 WWWWWWWLFFFFFFFFFFL LLLLLLLLLLLLLLLLLLLLLLLLLLLLW
76 80 A S + 0 0 127 49 61 SSSSSSSASSSSSSSSSSS AAAAAAAAAAAAAAAAAAAAAAAAAAAAG
77 81 A K 0 0 69 49 0 KKKKKKKKKKKKKKKKKKK KKKKKKKKKKKKKKKKKKKKKKKKKKKKK
78 82 A A 0 0 107 48 47 AAAAAAAGTTTTTTTTTTT AAAAAAAAAAAAAAAAAAAAAAAAAAAA
## SEQUENCE PROFILE AND ENTROPY
SeqNo PDBNo V L I M F W Y G A P S T C H R K Q E N D NOCC NDEL NINS ENTROPY RELENT WEIGHT
1 5 A 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 100 0 0 0 0 48 0 0 0.000 0 1.00
2 6 A 0 78 22 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 50 0 0 0.527 17 0.74
3 7 A 0 0 2 0 0 0 0 0 0 0 0 0 0 0 96 0 0 2 0 0 50 0 0 0.196 6 0.85
4 8 A 0 2 0 0 0 0 98 0 0 0 0 0 0 0 0 0 0 0 0 0 50 0 0 0.098 3 0.95
5 9 A 0 0 0 0 0 0 0 0 96 0 4 0 0 0 0 0 0 0 0 0 50 0 0 0.168 5 0.90
6 10 A 0 0 98 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 50 0 0 0.098 3 0.97
7 11 A 0 100 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 50 0 0 0.000 0 1.00
8 12 A 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 98 0 0 0 0 50 0 0 0.098 3 0.97
9 13 A 0 56 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 40 2 0 50 0 0 0.848 28 -0.03
10 14 A 2 2 40 0 0 0 0 0 0 0 0 0 0 0 56 0 0 0 0 0 50 0 0 0.848 28 -0.02
11 15 A 0 0 0 0 16 0 0 2 2 0 0 0 0 0 0 0 0 22 0 58 50 0 0 1.099 36 0.14
12 16 A 0 0 0 0 0 0 0 0 0 0 2 0 0 0 0 2 0 72 20 4 50 0 0 0.844 28 0.54
13 17 A 0 0 0 0 0 0 0 44 0 0 0 0 0 0 0 56 0 0 0 0 50 0 0 0.686 22 0.12
14 18 A 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 58 0 0 40 0 50 2 10 0.761 25 0.36
15 19 A 2 0 0 0 0 0 0 0 0 0 0 17 0 0 0 2 0 21 58 0 48 0 0 1.101 36 0.21
16 20 A 0 0 0 0 0 0 0 0 0 76 0 0 0 0 0 0 2 0 22 0 50 0 0 0.620 20 0.40
17 21 A 0 40 0 0 56 0 2 0 0 2 0 0 0 0 0 0 0 0 0 0 50 0 0 0.848 28 0.74
18 22 A 0 0 56 0 0 0 0 0 0 0 18 2 0 0 0 2 0 0 2 20 50 0 0 1.190 39 -0.05
19 23 A 0 0 0 0 20 0 0 0 2 0 0 0 0 4 0 0 0 74 0 0 50 0 0 0.752 25 0.13
20 24 A 0 56 0 0 0 0 0 20 0 0 0 0 0 0 0 2 2 4 16 0 50 0 0 1.225 40 -0.19
21 25 A 0 0 20 0 0 0 0 0 0 0 0 0 0 0 0 56 2 0 0 22 50 0 0 1.058 35 0.06
22 26 A 0 20 18 0 2 0 4 56 0 0 0 0 0 0 0 0 0 0 0 0 50 0 0 1.162 38 -0.17
23 27 A 0 0 0 0 0 0 0 36 0 0 0 0 0 0 0 0 56 0 4 4 50 0 0 0.950 31 0.26
24 28 A 76 0 22 0 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0 0 50 0 0 0.620 20 0.78
25 29 A 0 0 0 0 2 0 0 0 0 56 20 16 0 0 0 0 0 4 0 2 50 0 0 1.225 40 0.17
26 30 A 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 96 2 0 50 0 1 0.196 6 0.85
27 31 A 0 0 0 0 0 0 0 0 0 0 2 0 0 0 0 0 0 78 0 20 50 0 0 0.594 19 0.78
28 32 A 0 4 2 0 0 0 0 0 0 0 0 0 0 0 0 0 36 0 0 58 50 0 0 0.891 29 0.41
29 33 A 2 0 56 0 40 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 50 0 0 0.848 28 0.51
30 34 A 0 56 0 0 0 2 0 0 0 0 2 0 0 0 2 0 0 0 20 18 50 0 0 1.190 39 -0.17
31 35 A 0 0 0 0 0 0 0 0 0 0 4 0 0 0 0 0 0 58 0 38 50 0 0 0.812 27 0.64
32 36 A 0 0 2 0 0 0 0 0 20 0 0 2 0 0 0 0 76 0 0 0 50 0 0 0.687 22 0.46
33 37 A 16 20 2 0 0 0 0 0 4 0 2 56 0 0 0 0 0 0 0 0 50 0 0 1.225 40 0.10
34 38 A 0 0 2 0 0 2 0 0 0 0 2 0 0 0 0 56 0 0 38 0 50 0 0 0.927 30 0.29
35 39 A 0 0 0 2 96 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 50 0 0 0.196 6 0.86
36 40 A 0 98 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 50 0 0 0.098 3 0.97
37 41 A 0 0 2 0 0 0 0 0 0 0 56 0 0 0 2 38 2 0 0 0 50 0 0 0.927 30 0.21
38 42 A 0 0 0 0 0 0 0 0 0 0 0 2 0 0 74 0 0 0 20 4 50 0 0 0.752 25 0.37
39 43 A 0 0 0 0 0 0 0 0 2 0 2 0 0 0 0 0 0 40 56 0 50 0 0 0.848 28 0.39
40 44 A 0 0 0 0 0 0 0 80 0 0 20 0 0 0 0 0 0 0 0 0 50 0 0 0.500 16 0.69
41 45 A 0 58 0 0 2 0 40 0 0 0 0 0 0 0 0 0 0 0 0 0 50 0 0 0.761 25 0.37
42 46 A 2 60 38 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 50 0 0 0.752 25 0.62
43 47 A 20 2 18 0 0 0 0 0 0 0 0 0 0 0 0 4 0 56 0 0 50 0 0 1.162 38 -0.01
44 48 A 0 0 0 0 0 0 0 42 0 0 56 0 0 0 0 0 0 0 2 0 50 1 0 0.767 25 0.47
45 49 A 20 0 2 57 0 0 0 20 0 0 0 0 0 0 0 0 0 0 0 0 49 0 0 1.048 34 0.13
46 50 A 56 0 0 0 0 0 0 4 0 0 0 22 0 16 2 0 0 0 0 0 50 0 0 1.158 38 0.02
47 51 A 0 0 2 0 2 56 38 0 0 0 0 0 0 0 0 2 0 0 0 0 50 0 0 0.927 30 0.67
48 52 A 0 0 0 0 0 0 0 22 56 2 18 2 0 0 0 0 0 0 0 0 50 0 0 1.123 37 0.38
49 53 A 0 2 0 0 0 0 0 0 0 2 20 0 0 0 0 2 0 0 0 74 50 0 0 0.779 26 0.38
50 54 A 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 78 22 50 30 11 0.527 17 0.72
51 55 A 0 50 0 0 0 0 0 0 5 0 0 0 0 0 45 0 0 0 0 0 20 0 0 0.856 28 -0.17
52 56 A 0 0 0 0 0 0 0 5 5 90 0 0 0 0 0 0 0 0 0 0 21 0 0 0.381 12 0.76
53 57 A 0 0 0 0 0 5 0 0 48 0 0 0 0 38 5 0 0 0 5 0 21 0 0 1.156 38 -0.03
54 58 A 2 16 2 0 0 2 0 0 0 0 0 78 0 0 0 0 0 0 0 0 50 1 0 0.722 24 0.42
55 59 A 57 0 0 0 0 0 37 0 2 0 0 0 0 0 2 2 0 0 0 0 49 0 0 0.926 30 -0.00
56 60 A 2 0 0 0 2 0 2 0 0 0 0 0 0 56 20 16 0 2 0 0 50 0 0 1.253 41 0.17
57 61 A 0 16 58 2 20 0 0 0 0 0 0 0 0 0 0 0 0 2 2 0 50 9 0 1.166 38 0.43
58 62 A 0 2 0 0 2 68 0 20 2 0 0 0 0 0 0 0 0 0 2 2 41 0 0 1.032 34 -0.36
59 63 A 0 18 0 0 0 0 0 56 2 16 2 4 0 0 0 2 0 0 0 0 50 1 0 1.290 43 -0.01
60 64 A 0 0 0 0 0 0 0 0 0 0 57 0 0 0 0 20 2 18 2 0 49 0 0 1.114 37 0.16
61 65 A 56 40 4 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 50 0 0 0.820 27 0.61
62 66 A 0 0 0 0 0 0 0 0 0 0 56 44 0 0 0 0 0 0 0 0 50 0 0 0.686 22 0.34
63 67 A 0 56 0 0 2 0 0 0 0 0 0 0 0 0 0 0 2 38 0 2 50 0 0 0.927 30 -0.02
64 68 A 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 40 0 58 0 2 50 0 0 0.761 25 0.35
65 69 A 0 0 0 0 0 0 0 100 0 0 0 0 0 0 0 0 0 0 0 0 50 0 0 0.000 0 1.00
66 70 A 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 98 0 0 50 0 0 0.098 3 0.92
67 71 A 0 0 20 0 0 0 0 0 0 0 0 0 0 0 2 58 0 2 18 0 50 0 0 1.103 36 0.10
68 72 A 0 0 0 0 22 0 78 0 0 0 0 0 0 0 0 0 0 0 0 0 50 0 0 0.527 17 0.96
69 73 A 0 100 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 50 0 0 0.000 0 1.00
70 74 A 56 0 0 0 0 0 0 0 20 0 0 0 0 0 0 22 0 0 2 0 50 0 0 1.058 35 0.03
71 75 A 0 0 0 0 0 0 0 0 0 0 2 0 0 0 0 0 0 96 0 2 50 0 0 0.196 6 0.92
72 76 A 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 0 0 98 0 50 0 0 0.098 3 0.95
73 77 A 0 0 0 0 0 0 0 16 0 0 84 0 0 0 0 0 0 0 0 0 50 0 0 0.440 14 0.76
74 78 A 0 0 0 0 0 0 0 57 2 2 0 39 0 0 0 0 0 0 0 0 49 0 0 0.846 28 0.34
75 79 A 0 61 0 0 20 18 0 0 0 0 0 0 0 0 0 0 0 0 0 0 49 0 0 0.936 31 0.65
76 80 A 0 0 0 0 0 0 0 2 59 0 39 0 0 0 0 0 0 0 0 0 49 0 0 0.757 25 0.38
77 81 A 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 100 0 0 0 0 49 0 0 0.000 0 1.00
78 82 A 0 0 0 0 0 0 0 2 75 0 0 23 0 0 0 0 0 0 0 0 48 0 0 0.634 21 0.53
## INSERTION LIST
AliNo IPOS JPOS Len Sequence
9 15 21 1 nYe
9 51 58 2 nVLl
10 15 21 1 nYe
10 51 58 2 nVLl
11 15 21 1 nYe
11 51 58 2 nVLl
12 15 21 1 nYe
12 51 58 2 nVLl
13 15 21 1 nYe
13 51 58 2 nVLl
14 15 21 1 nYe
14 51 58 2 nVLl
15 15 21 1 nYe
15 51 58 2 nVLl
16 15 21 1 nYe
16 51 58 2 nVLl
17 15 21 1 nYe
17 51 58 2 nVLl
18 15 21 1 nYe
18 51 58 2 nVLl
49 25 35 2 nTNs
49 48 60 1 dMa
//