Complet list of 2glh hssp file
Complete list of 2glh.hssp file
HSSP HOMOLOGY DERIVED SECONDARY STRUCTURE OF PROTEINS , VERSION 2.0 2011
PDBID 2GLH
THRESHOLD according to: t(L)=(290.15 * L ** -0.562) + 5
REFERENCE Sander C., Schneider R. : Database of homology-derived protein structures. Proteins, 9:56-68 (1991).
CONTACT Maintained at http://www.cmbi.ru.nl/ by Maarten L. Hekkelman
DATE file generated on 2014-05-19
HEADER HORMONE/GROWTH FACTOR 04-APR-06 2GLH
COMPND MOL_ID: 1; MOLECULE: CALCITONIN-1; CHAIN: A; ENGINEERED: YES
SOURCE MOL_ID: 1; SYNTHETIC: YES; OTHER_DETAILS: PEPTIDE SYNTHESIS
AUTHOR G.ANDREOTTI,B.LOPEZ-MENDEZ,P.AMODEO,M.A.MORELLI,H.NAKAMUTA, A.MOTTA
DBREF 2GLH A 1 32 UNP P01263 CALC1_ONCKE 83 114
SEQLENGTH 32
NCHAIN 1 chain(s) in 2GLH data set
NALIGN 94
NOTATION : ID: EMBL/SWISSPROT identifier of the aligned (homologous) protein
NOTATION : STRID: if the 3-D structure of the aligned protein is known, then STRID is the Protein Data Bank identifier as taken
NOTATION : from the database reference or DR-line of the EMBL/SWISSPROT entry
NOTATION : %IDE: percentage of residue identity of the alignment
NOTATION : %SIM (%WSIM): (weighted) similarity of the alignment
NOTATION : IFIR/ILAS: first and last residue of the alignment in the test sequence
NOTATION : JFIR/JLAS: first and last residue of the alignment in the alignend protein
NOTATION : LALI: length of the alignment excluding insertions and deletions
NOTATION : NGAP: number of insertions and deletions in the alignment
NOTATION : LGAP: total length of all insertions and deletions
NOTATION : LSEQ2: length of the entire sequence of the aligned protein
NOTATION : ACCNUM: SwissProt accession number
NOTATION : PROTEIN: one-line description of aligned protein
NOTATION : SeqNo,PDBNo,AA,STRUCTURE,BP1,BP2,ACC: sequential and PDB residue numbers, amino acid (lower case = Cys), secondary
NOTATION : structure, bridge partners, solvent exposure as in DSSP (Kabsch and Sander, Biopolymers 22, 2577-2637(1983)
NOTATION : VAR: sequence variability on a scale of 0-100 as derived from the NALIGN alignments
NOTATION : pair of lower case characters (AvaK) in the alignend sequence bracket a point of insertion in this sequence
NOTATION : dots (....) in the alignend sequence indicate points of deletion in this sequence
NOTATION : SEQUENCE PROFILE: relative frequency of an amino acid type at each position. Asx and Glx are in their
NOTATION : acid/amide form in proportion to their database frequencies
NOTATION : NOCC: number of aligned sequences spanning this position (including the test sequence)
NOTATION : NDEL: number of sequences with a deletion in the test protein at this position
NOTATION : NINS: number of sequences with an insertion in the test protein at this position
NOTATION : ENTROPY: entropy measure of sequence variability at this position
NOTATION : RELENT: relative entropy, i.e. entropy normalized to the range 0-100
NOTATION : WEIGHT: conservation weight
## PROTEINS : identifier and alignment statistics
NR. ID STRID %IDE %WSIM IFIR ILAS JFIR JLAS LALI NGAP LGAP LSEQ2 ACCNUM PROTEIN
1 : B5XGR7_SALSA 1.00 1.00 1 32 90 121 32 0 0 143 B5XGR7 Calcitonin-1 OS=Salmo salar GN=CALC1 PE=2 SV=1
2 : CALC1_ONCKE 2GLG 1.00 1.00 1 32 83 114 32 0 0 136 P01263 Calcitonin-1 OS=Oncorhynchus keta PE=1 SV=1
3 : Q76K78_ONCMY 1.00 1.00 1 32 83 114 32 0 0 136 Q76K78 Salmon calcitonin-Ia OS=Oncorhynchus mykiss PE=2 SV=1
4 : Q805B8_ONCMY 1.00 1.00 1 32 83 114 32 0 0 136 Q805B8 Salmon calcitonin-Ib OS=Oncorhynchus mykiss PE=2 SV=1
5 : Q8QG70_SALAL 1.00 1.00 1 32 1 32 32 0 0 32 Q8QG70 Calcitonin (Fragment) OS=Salvelinus alpinus GN=CT PE=4 SV=1
6 : Q8QG71_ONCKI 1.00 1.00 1 32 1 32 32 0 0 32 Q8QG71 Calcitonin (Fragment) OS=Oncorhynchus kisutch GN=CT PE=4 SV=1
7 : Q8QG72_SALSA 1.00 1.00 1 32 1 32 32 0 0 32 Q8QG72 Calcitonin (Fragment) OS=Salmo salar GN=CT PE=4 SV=1
8 : Q8QG73_9TELE 1.00 1.00 1 32 1 32 32 0 0 32 Q8QG73 Calcitonin (Fragment) OS=Oncorhynchus sp. BZ-2002 GN=CT PE=4 SV=1
9 : Q8QG82_9TELE 1.00 1.00 1 32 1 32 32 0 0 32 Q8QG82 Calcitonin (Fragment) OS=Oncorhynchus sp. FY-02 GN=CT PE=4 SV=1
10 : Q8QG84_ONCGO1FB9 1.00 1.00 1 32 1 32 32 0 0 32 Q8QG84 Calcitonin (Fragment) OS=Oncorhynchus gorbuscha GN=CT PE=1 SV=1
11 : Q91157_ONCGO 1.00 1.00 1 32 3 34 32 0 0 56 Q91157 Calcitonin (Fragment) OS=Oncorhynchus gorbuscha GN=calc I PE=2 SV=1
12 : Q91970_ONCGO 1.00 1.00 1 32 6 37 32 0 0 59 Q91970 CT protein (Fragment) OS=Oncorhynchus gorbuscha GN=CT PE=2 SV=1
13 : Q92163_ONCSP 1.00 1.00 1 32 9 40 32 0 0 62 Q92163 Calcitonin (Fragment) OS=Oncorhynchus sp. GN=CGRP PE=4 SV=1
14 : Q8QG83_ONCKE 0.97 1.00 1 32 1 32 32 0 0 32 Q8QG83 Calcitonin (Fragment) OS=Oncorhynchus keta GN=CT PE=4 SV=1
15 : W5KKN1_ASTMX 0.94 0.97 1 32 83 114 32 0 0 126 W5KKN1 Uncharacterized protein OS=Astyanax mexicanus PE=4 SV=1
16 : CALC_ANGJA 1BKU 0.91 0.97 1 32 1 32 32 0 0 32 P01262 Calcitonin OS=Anguilla japonica PE=1 SV=1
17 : F1QIK6_DANRE 0.91 0.97 1 32 83 114 32 0 0 133 F1QIK6 Uncharacterized protein OS=Danio rerio GN=calca PE=4 SV=1
18 : G3NTT9_GASAC 0.91 0.97 1 32 87 118 32 0 0 140 G3NTT9 Uncharacterized protein OS=Gasterosteus aculeatus PE=4 SV=1
19 : H2RY64_TAKRU 0.91 0.97 1 32 85 116 32 0 0 138 H2RY64 Uncharacterized protein OS=Takifugu rubripes PE=4 SV=1
20 : H3AME0_LATCH 0.91 0.97 1 32 83 114 32 0 0 191 H3AME0 Uncharacterized protein OS=Latimeria chalumnae PE=4 SV=1
21 : H3D8A6_TETNG 0.91 0.97 1 32 83 114 32 0 0 136 H3D8A6 Uncharacterized protein OS=Tetraodon nigroviridis PE=4 SV=1
22 : I3KEK3_ORENI 0.91 0.97 1 32 83 114 32 0 0 136 I3KEK3 Uncharacterized protein OS=Oreochromis niloticus GN=LOC100703568 PE=4 SV=1
23 : M3XIT5_LATCH 0.91 0.97 1 32 83 114 32 0 0 139 M3XIT5 Uncharacterized protein OS=Latimeria chalumnae PE=4 SV=1
24 : Q05K84_ORYLA 0.91 0.97 1 32 83 114 32 0 0 136 Q05K84 Calcitonin 2 OS=Oryzias latipes GN=CT2 PE=2 SV=1
25 : Q4S167_TETNG 0.91 0.97 1 32 83 114 32 0 0 184 Q4S167 Chromosome 13 SCAF14769, whole genome shotgun sequence. (Fragment) OS=Tetraodon nigroviridis GN=GSTENG00025692001 PE=4 SV=1
26 : Q8QFT8_TAKRU 0.91 0.97 1 32 83 114 32 0 0 136 Q8QFT8 Calcitonin OS=Takifugu rubripes GN=calc PE=4 SV=1
27 : Q9PS21_CARAU 0.91 0.97 1 32 1 32 32 0 0 32 Q9PS21 Calcitonin, CT OS=Carassius auratus PE=1 SV=1
28 : CALC2_ONCGO 0.88 0.97 1 32 1 32 32 0 0 32 P69165 Calcitonin-2 OS=Oncorhynchus gorbuscha PE=1 SV=1
29 : CALC2_ONCKE 0.88 0.97 1 32 1 32 32 0 0 32 P69067 Calcitonin-2 OS=Oncorhynchus keta PE=1 SV=1
30 : CALC2_ONCNE 0.88 0.97 1 32 1 32 32 0 0 32 P69068 Calcitonin-2 OS=Oncorhynchus nerka PE=1 SV=1
31 : F6W5T7_XENTR 0.88 0.97 1 32 55 86 32 0 0 111 F6W5T7 Uncharacterized protein (Fragment) OS=Xenopus tropicalis GN=calca PE=4 SV=1
32 : F7DY32_ORNAN 0.88 0.94 1 32 87 118 32 0 0 143 F7DY32 Uncharacterized protein OS=Ornithorhynchus anatinus GN=LOC100080075 PE=4 SV=1
33 : Q208D3_DANRE 0.88 0.94 1 32 83 114 32 0 0 125 Q208D3 Calcitonin (Fragment) OS=Danio rerio GN=calca PE=2 SV=1
34 : V8NHM4_OPHHA 0.88 0.97 1 32 49 80 32 0 0 98 V8NHM4 Calcitonin (Fragment) OS=Ophiophagus hannah GN=CALCA PE=4 SV=1
35 : W5K252_ASTMX 0.88 0.97 1 32 107 138 32 0 0 156 W5K252 Uncharacterized protein OS=Astyanax mexicanus PE=4 SV=1
36 : B0FYW9_CHICK 0.84 0.97 1 32 82 113 32 0 0 138 B0FYW9 Calcitonin OS=Gallus gallus GN=CALCA PE=2 SV=1
37 : CALC3_ONCKI 0.84 0.97 1 32 1 32 32 0 0 32 P01265 Calcitonin-3 OS=Oncorhynchus kisutch PE=1 SV=1
38 : CALC_CHICK 0.84 0.97 1 32 82 113 32 0 0 138 P07660 Calcitonin OS=Gallus gallus GN=CALCA PE=1 SV=2
39 : G1KMP3_ANOCA 0.84 0.97 1 32 83 114 32 0 0 140 G1KMP3 Uncharacterized protein OS=Anolis carolinensis GN=LOC100561150 PE=4 SV=1
40 : G1N4N0_MELGA 0.84 0.97 1 32 89 120 32 0 0 145 G1N4N0 Uncharacterized protein (Fragment) OS=Meleagris gallopavo GN=LOC100546451 PE=4 SV=2
41 : H0ZDU9_TAEGU 0.84 0.97 1 32 82 113 32 0 0 138 H0ZDU9 Uncharacterized protein OS=Taeniopygia guttata GN=CALCA PE=4 SV=1
42 : K7FYS1_PELSI 0.84 0.97 1 32 82 113 32 0 0 138 K7FYS1 Uncharacterized protein OS=Pelodiscus sinensis PE=4 SV=1
43 : M7CC40_CHEMY 0.84 0.97 1 32 82 113 32 0 0 138 M7CC40 Calcitonin OS=Chelonia mydas GN=UY3_04491 PE=4 SV=1
44 : P79813_ONCGO 0.84 0.97 1 32 9 40 32 0 0 62 P79813 Calcitonin 4 (Fragment) OS=Oncorhynchus gorbuscha PE=2 SV=1
45 : Q805B7_ONCMY 0.84 0.97 1 32 86 117 32 0 0 139 Q805B7 Salmon calcitonin-IV OS=Oncorhynchus mykiss PE=2 SV=1
46 : Q9W6Z3_CHICK 0.84 0.97 1 32 9 40 32 0 0 65 Q9W6Z3 Calcitonin/CGRP gene exon 4 (Fragment) OS=Gallus gallus PE=4 SV=2
47 : R0JS49_ANAPL 0.84 0.97 1 32 82 113 32 0 0 138 R0JS49 Calcitonin (Fragment) OS=Anas platyrhynchos GN=Anapl_08739 PE=4 SV=1
48 : U3IM05_ANAPL 0.84 0.97 1 32 87 118 32 0 0 143 U3IM05 Uncharacterized protein OS=Anas platyrhynchos PE=4 SV=1
49 : U3JDJ2_FICAL 0.84 0.97 1 32 82 113 32 0 0 138 U3JDJ2 Uncharacterized protein OS=Ficedula albicollis PE=4 SV=1
50 : W5M5M1_LEPOC 0.84 0.97 1 32 91 122 32 0 0 147 W5M5M1 Uncharacterized protein (Fragment) OS=Lepisosteus oculatus PE=4 SV=1
51 : H2V549_TAKRU 0.81 0.94 1 32 79 110 32 0 0 128 H2V549 Uncharacterized protein OS=Takifugu rubripes GN=LOC101066503 PE=4 SV=1
52 : Q4SI74_TETNG 0.81 0.94 1 32 80 111 32 0 0 129 Q4SI74 Chromosome 5 SCAF14581, whole genome shotgun sequence OS=Tetraodon nigroviridis GN=GSTENG00017811001 PE=4 SV=1
53 : Q805B6_ONCMY 0.81 0.97 1 32 83 114 32 0 0 136 Q805B6 Salmon calcitonin-V OS=Oncorhynchus mykiss PE=2 SV=1
54 : Q90YC4_PAROL 0.81 0.94 1 32 1 32 32 0 0 50 Q90YC4 Calcitonin (Fragment) OS=Paralichthys olivaceus GN=CT/CGRP PE=4 SV=1
55 : G3WPV1_SARHA 0.75 0.91 1 32 90 121 32 0 0 146 G3WPV1 Uncharacterized protein (Fragment) OS=Sarcophilus harrisii GN=LOC100931953 PE=4 SV=1
56 : Q05K85_ORYLA 0.75 0.94 1 32 82 113 32 0 0 127 Q05K85 Calcitonin 1 (Fragment) OS=Oryzias latipes GN=CT1 PE=2 SV=1
57 : V9KUC7_CALMI 0.75 0.91 1 32 24 55 32 0 0 80 V9KUC7 Calcitonin OS=Callorhynchus milii PE=4 SV=1
58 : CALC_LITCT 0.69 0.88 1 32 1 32 32 0 0 32 P0C234 Calcitonin OS=Lithobates catesbeiana PE=1 SV=1
59 : B3XXF0_CANFA 0.59 0.84 1 32 84 115 32 0 0 140 B3XXF0 CT-2 OS=Canis familiaris GN=Crsp-2 PE=2 SV=1
60 : B3XXF1_CANFA 0.59 0.84 1 32 4 35 32 0 0 60 B3XXF1 CT-3 (Fragment) OS=Canis familiaris GN=Crsp-3 PE=4 SV=1
61 : CALC_HORSE 0.59 0.84 1 32 84 115 32 0 0 140 Q9N0V5 Calcitonin OS=Equus caballus GN=CALCA PE=2 SV=1
62 : F1PM04_CANFA 0.59 0.84 1 32 85 116 32 0 0 141 F1PM04 Uncharacterized protein OS=Canis familiaris GN=CRSP-3 PE=4 SV=1
63 : G1MN72_AILME 0.59 0.84 1 32 10 41 32 0 0 48 G1MN72 Uncharacterized protein (Fragment) OS=Ailuropoda melanoleuca GN=CALCA PE=4 SV=1
64 : M3WCH4_FELCA 0.59 0.84 1 32 84 115 32 0 0 140 M3WCH4 Uncharacterized protein OS=Felis catus GN=CALCA PE=4 SV=1
65 : G3HSE0_CRIGR 0.56 0.84 1 32 155 186 32 0 0 206 G3HSE0 Calcitonin OS=Cricetulus griseus GN=I79_013771 PE=4 SV=1
66 : G5E702_LOXAF 0.55 0.84 1 31 87 117 31 0 0 122 G5E702 Uncharacterized protein OS=Loxodonta africana GN=CALCA PE=4 SV=1
67 : CALC_RAT 0.53 0.88 1 32 85 116 32 0 0 136 P01257 Calcitonin OS=Rattus norvegicus GN=Calca PE=1 SV=1
68 : G1U9R2_RABIT 0.53 0.84 1 32 84 115 32 0 0 140 G1U9R2 Uncharacterized protein OS=Oryctolagus cuniculus GN=CALCA PE=4 SV=2
69 : G5BUD9_HETGA 0.53 0.84 1 32 84 115 32 0 0 140 G5BUD9 Calcitonin OS=Heterocephalus glaber GN=GW7_21359 PE=4 SV=1
70 : H0VT18_CAVPO 0.53 0.84 1 32 84 115 32 0 0 140 H0VT18 Uncharacterized protein OS=Cavia porcellus GN=CALCA PE=4 SV=1
71 : I3M334_SPETR 0.53 0.84 1 32 81 112 32 0 0 137 I3M334 Uncharacterized protein OS=Spermophilus tridecemlineatus GN=CALCA PE=4 SV=1
72 : L9LAK2_TUPCH 0.53 0.84 1 32 86 117 32 0 0 142 L9LAK2 Calcitonin OS=Tupaia chinensis GN=TREES_T100011587 PE=4 SV=1
73 : CALC_CANFA 0.50 0.78 1 32 85 116 32 0 0 130 P41547 Calcitonin OS=Canis familiaris GN=CALCA PE=1 SV=2
74 : CALC_HUMAN 2JXZ 0.50 0.84 1 32 85 116 32 0 0 141 P01258 Calcitonin OS=Homo sapiens GN=CALCA PE=1 SV=2
75 : CALC_MOUSE 0.50 0.84 1 32 85 116 32 0 0 136 P70160 Calcitonin OS=Mus musculus GN=Calca PE=2 SV=1
76 : D2HEQ1_AILME 0.50 0.78 1 32 87 118 32 0 0 131 D2HEQ1 Putative uncharacterized protein (Fragment) OS=Ailuropoda melanoleuca GN=PANDA_009290 PE=4 SV=1
77 : F6UQ96_MACMU 0.50 0.84 1 32 84 115 32 0 0 140 F6UQ96 Uncharacterized protein OS=Macaca mulatta GN=CALCA PE=4 SV=1
78 : F6UQA4_MACMU 0.50 0.84 1 32 84 115 32 0 0 140 F6UQA4 Uncharacterized protein OS=Macaca mulatta GN=CALCA PE=4 SV=1
79 : F7HDI9_CALJA 0.50 0.84 1 32 83 114 32 0 0 139 F7HDI9 Uncharacterized protein OS=Callithrix jacchus GN=CALCA PE=4 SV=1
80 : F7IEE7_CALJA 0.50 0.84 1 32 81 112 32 0 0 137 F7IEE7 Uncharacterized protein OS=Callithrix jacchus GN=CALCA PE=4 SV=1
81 : F7IR69_CALJA 0.50 0.84 1 32 83 114 32 0 0 139 F7IR69 Uncharacterized protein OS=Callithrix jacchus GN=CALCA PE=4 SV=1
82 : G1M9C6_AILME 0.50 0.78 1 32 87 118 32 0 0 142 G1M9C6 Uncharacterized protein OS=Ailuropoda melanoleuca GN=LOC100466578 PE=4 SV=1
83 : G3RE30_GORGO 0.50 0.84 1 32 85 116 32 0 0 141 G3RE30 Uncharacterized protein OS=Gorilla gorilla gorilla GN=101150756 PE=4 SV=1
84 : G7NDV1_MACMU 0.50 0.84 1 32 84 115 32 0 0 140 G7NDV1 Calcitonin OS=Macaca mulatta GN=EGK_06465 PE=4 SV=1
85 : G7PQN3_MACFA 0.50 0.84 1 32 84 115 32 0 0 140 G7PQN3 Calcitonin OS=Macaca fascicularis GN=EGM_05830 PE=4 SV=1
86 : H0XGX0_OTOGA 0.50 0.88 1 32 84 115 32 0 0 140 H0XGX0 Uncharacterized protein OS=Otolemur garnettii GN=CALCA PE=4 SV=1
87 : H2PXP4_PONAB 0.50 0.84 1 32 86 117 32 0 0 142 H2PXP4 Uncharacterized protein OS=Pongo abelii GN=CALCA PE=4 SV=1
88 : H2R3Y5_PANTR 0.50 0.84 1 32 85 116 32 0 0 141 H2R3Y5 Uncharacterized protein OS=Pan troglodytes GN=CALCA PE=4 SV=1
89 : H9H9X5_NOMLE 0.50 0.84 1 32 85 116 32 0 0 141 H9H9X5 Uncharacterized protein OS=Nomascus leucogenys GN=CALCA PE=4 SV=1
90 : M3WJM0_FELCA 0.50 0.78 1 32 87 118 32 0 0 132 M3WJM0 Uncharacterized protein OS=Felis catus GN=LOC101094539 PE=4 SV=1
91 : Q3V1A7_MOUSE 0.50 0.88 1 32 85 116 32 0 0 136 Q3V1A7 Putative uncharacterized protein OS=Mus musculus GN=Calca PE=2 SV=1
92 : Q7M2Z4_RABIT 0.50 0.81 1 32 81 112 32 0 0 137 Q7M2Z4 Calcitonin (Precursor) OS=Oryctolagus cuniculus PE=4 SV=1
93 : U3EPP1_CALJA 0.50 0.84 1 32 80 111 32 0 0 136 U3EPP1 Calcitonin isoform CT preproprotein OS=Callithrix jacchus GN=CALCA PE=2 SV=1
94 : O88610_MOUSE 0.47 0.81 1 32 10 41 32 0 0 48 O88610 Calcitonin (Fragment) OS=Mus musculus PE=4 SV=1
## ALIGNMENTS 1 - 70
SeqNo PDBNo AA STRUCTURE BP1 BP2 ACC NOCC VAR ....:....1....:....2....:....3....:....4....:....5....:....6....:....7
1 1 A a 0 0 158 95 0 CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
2 2 A S - 0 0 104 95 43 SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSASASAAAAAASSAAAASAASTSTTSSSSSSSGSGGGG
3 3 A N > - 0 0 89 95 36 NNNNNNNNNNNNNNNNSNNNNNNNNNSNNNNNSNNSNSNSSSSNNSSSSNGGNGNGSGNNNNNNNSNNNN
4 4 A L H > S+ 0 0 146 95 0 LLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLL
5 5 A S H > S+ 0 0 82 95 0 SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
6 6 A T H > S+ 0 0 71 95 0 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
7 7 A a H X S+ 0 0 28 95 0 CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
8 8 A V H X S+ 0 0 103 95 38 VVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVMVVVVVVVVVVVVVVVMVLVVAVVVVVVMMMMMM
9 9 A L H X S+ 0 0 109 95 1 LLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLVLLLLLLLLLLLLL
10 10 A G H X S+ 0 0 34 95 10 GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGMGGGGGGGGGGGG
11 11 A K H X S+ 0 0 134 95 68 KKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKRKKTTTTTTTATTTT
12 12 A L H X S+ 0 0 107 95 60 LLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLYYYYYYYYYYYY
13 13 A S H X S+ 0 0 59 95 49 SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSTTTTTTTSTTTT
14 14 A Q H X S+ 0 0 130 95 9 QQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ
15 15 A E H X S+ 0 0 99 95 27 EEEEEEEEEEEEEEEEEEEEEEEEEEEDDDEEEEEEDEEEEEEDDEEEEEDDDDEDEDDDDDDDEDDDDD
16 16 A L H X S+ 0 0 91 95 10 LLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLIILILILLLLLLLLLLLLLL
17 17 A H H X S+ 0 0 103 95 57 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHLHHHHHHHHHHHHHHHHHHHHHHHHHNNNNNNNNNNNN
18 18 A K H X S+ 0 0 75 95 13 KKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKRKKRKKKKKKKKKKKK
19 19 A L H >< S+ 0 0 113 95 15 LLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLMLLLLLLLLLLLLLLLLLLFFFFFFFFFFFFF
20 20 A Q H 3< S+ 0 0 126 95 40 QQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQHQQNHHHHHHHHHHHH
21 21 A T H >X S+ 0 0 43 95 3 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTSTTTTTTTTTTTTTTTTTTTTTTTTTTSTTTTTTTTTTTT
22 22 A Y T << + 0 0 158 95 7 YYYYYYYYYYYYYYYYYFFYFFYFFFYFFFYNYYFYFYYYYYYFFYYYYFYYFYYYIYFFFFFFFFFFFF
23 23 A P T 34 S+ 0 0 86 95 15 PPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPTPQPPPPPPPPSPPPP
24 24 A R T <4 S- 0 0 214 95 63 RRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRQQQQQQQGQQQQ
25 25 A T < - 0 0 47 95 14 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTYTTTT
26 26 A N S S+ 0 0 67 95 68 NNNNNNNNNNNNNNNDNNNDNNDNNNNNNNDDNDDDNDDDDDDDDDDDDDNNDNDDDNAAAAAAANSAAA
27 27 A T S > S+ 0 0 118 95 50 TTTTTTTTTTTTTTVVVVVVVVVVVVVTTTVVVVVVTVVVVVVVVVVVVVVVVVVVVVIIIIIIIFIIII
28 28 A G T 3 S+ 0 0 60 95 0 GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG
29 29 A S T 3 S+ 0 0 81 95 72 SSSSSSSSSSSSSNAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAASAVVVVVVVSVVVV
30 30 A G < + 0 0 20 95 20 GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGSGGGGRGAGGGGGGGGGGGGG
31 31 A T 0 0 114 95 55 TTTTTTTTTTTTTTTTTTTTTTTTTTTVVVTTTTTTVTTTTTTTTTTTTTTTTTTTTTAAAAAAAAAAAA
32 32 A P 0 0 160 94 0 PPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPP PPPP
## ALIGNMENTS 71 - 94
SeqNo PDBNo AA STRUCTURE BP1 BP2 ACC NOCC VAR ....:....8....:....9....:....0....:....1....:....2....:....3....:....4
1 1 A a 0 0 158 95 0 CCCCCCCCCCCCCCCCCCCCCCCC
2 2 A S - 0 0 104 95 43 GGSGGSGGSSSSGGGGGGGSGGSG
3 3 A N > - 0 0 89 95 36 NNNNNNNNKKKNNNNNNNNNNNKN
4 4 A L H > S+ 0 0 146 95 0 LLLLLLLLLLLLLLLLLLLLLLLL
5 5 A S H > S+ 0 0 82 95 0 SSSSSSSSSSSSSSSSSSSSSSSS
6 6 A T H > S+ 0 0 71 95 0 TTTTTTTTTTTTTTTTTTTTTTTT
7 7 A a H X S+ 0 0 28 95 0 CCCCCCCCCCCCCCCCCCCCCCCC
8 8 A V H X S+ 0 0 103 95 38 MMVMMVMMMMMVMMMMMMMVMMMM
9 9 A L H X S+ 0 0 109 95 1 LLLLLLLLLLLLLLLLLLLLLLLL
10 10 A G H X S+ 0 0 34 95 10 GGGGGGGGSSSGGGGGGGGGGGSG
11 11 A K H X S+ 0 0 134 95 68 TTTTTTTTTTTTTTTMTTTATTTT
12 12 A L H X S+ 0 0 107 95 60 YYYYYYYYYYYYYYYYYYYYYYYY
13 13 A S H X S+ 0 0 59 95 49 TTSTTSTTSSSSTTTTTTTSTTST
14 14 A Q H X S+ 0 0 130 95 9 QQKQQKQQQQQKQQQQQQQKQQQQ
15 15 A E H X S+ 0 0 99 95 27 DDDDDDDDNNNDDDDDDDDDDDND
16 16 A L H X S+ 0 0 91 95 10 LLLFLLFFFFFLFFFFFFFLLLFL
17 17 A H H X S+ 0 0 103 95 57 NNNNNNNNSSSNNNNNNNNNNNSN
18 18 A K H X S+ 0 0 75 95 13 KKNKKNKKKKKNKKKKKKKNKKKE
19 19 A L H >< S+ 0 0 113 95 15 FFFFFFFFFFFFFFFFFFFFFFFF
20 20 A Q H 3< S+ 0 0 126 95 40 HHHHHHHHHHHHHHHHHHHHHHHH
21 21 A T H >X S+ 0 0 43 95 3 TTTTTTTTTTTTTTTTTTTTTTTT
22 22 A Y T << + 0 0 158 95 7 FFFFFFFFFFFFFFFFFFFFFFFF
23 23 A P T 34 S+ 0 0 86 95 15 PPSPPSPPPPPSPPPPPPPSPPPP
24 24 A R T <4 S- 0 0 214 95 63 QQGQQGQQKKKGQQQQQQQGQQKQ
25 25 A T < - 0 0 47 95 14 TTITTITTTTTITTTTTTTITTTT
26 26 A N S S+ 0 0 67 95 68 AAGASGAAAAAGAAASAAAGSAAS
27 27 A T S > S+ 0 0 118 95 50 IIFIIFIIVVVFIIIIIIIFSIVI
28 28 A G T 3 S+ 0 0 60 95 0 GGGGGGGGGGGGGGGGGGGGGGGG
29 29 A S T 3 S+ 0 0 81 95 72 VVAVVAVVPPPAVVVVVVVAVVPV
30 30 A G < + 0 0 20 95 20 GGEGEEGGGGGEGGGGGGGEEVGE
31 31 A T 0 0 114 95 55 AATAATAAAAATAAAAAAATAAAA
32 32 A P 0 0 160 94 0 PPPPPPPPPPPPPPPPPPPPPPPP
## SEQUENCE PROFILE AND ENTROPY
SeqNo PDBNo V L I M F W Y G A P S T C H R K Q E N D NOCC NDEL NINS ENTROPY RELENT WEIGHT
1 1 A 0 0 0 0 0 0 0 0 0 0 0 0 100 0 0 0 0 0 0 0 95 0 0 0.000 0 1.00
2 2 A 0 0 0 0 0 0 0 22 15 0 60 3 0 0 0 0 0 0 0 0 95 0 0 1.031 34 0.56
3 3 A 0 0 0 0 0 0 0 5 0 0 16 0 0 0 0 4 0 0 75 0 95 0 0 0.797 26 0.64
4 4 A 0 100 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 95 0 0 0.000 0 1.00
5 5 A 0 0 0 0 0 0 0 0 0 0 100 0 0 0 0 0 0 0 0 0 95 0 0 0.000 0 1.00
6 6 A 0 0 0 0 0 0 0 0 0 0 0 100 0 0 0 0 0 0 0 0 95 0 0 0.000 0 1.00
7 7 A 0 0 0 0 0 0 0 0 0 0 0 0 100 0 0 0 0 0 0 0 95 0 0 0.000 0 1.00
8 8 A 68 1 0 29 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 95 0 0 0.716 23 0.61
9 9 A 1 99 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 95 0 0 0.058 1 0.99
10 10 A 0 0 0 1 0 0 0 95 0 0 4 0 0 0 0 0 0 0 0 0 95 0 0 0.233 7 0.90
11 11 A 0 0 0 1 0 0 0 0 2 0 0 35 0 0 1 61 0 0 0 0 95 0 0 0.846 28 0.32
12 12 A 0 62 0 0 0 0 38 0 0 0 0 0 0 0 0 0 0 0 0 0 95 0 0 0.664 22 0.40
13 13 A 0 0 0 0 0 0 0 0 0 0 72 28 0 0 0 0 0 0 0 0 95 0 0 0.597 19 0.50
14 14 A 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4 96 0 0 0 95 0 0 0.175 5 0.91
15 15 A 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 51 4 45 95 0 0 0.837 27 0.73
16 16 A 0 81 4 0 15 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 95 0 0 0.586 19 0.89
17 17 A 0 1 0 0 0 0 0 0 0 0 4 0 0 61 0 0 0 0 34 0 95 0 0 0.849 28 0.42
18 18 A 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 93 0 1 4 0 95 0 0 0.333 11 0.86
19 19 A 0 60 0 1 39 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 95 0 0 0.722 24 0.84
20 20 A 0 0 0 0 0 0 0 0 0 0 0 0 0 39 0 0 60 0 1 0 95 0 0 0.722 24 0.59
21 21 A 0 0 0 0 0 0 0 0 0 0 2 98 0 0 0 0 0 0 0 0 95 0 0 0.102 3 0.96
22 22 A 0 0 1 0 55 0 43 0 0 0 0 0 0 0 0 0 0 0 1 0 95 0 0 0.788 26 0.92
23 23 A 0 0 0 0 0 0 0 0 0 93 5 1 0 0 0 0 1 0 0 0 95 0 0 0.322 10 0.85
24 24 A 0 0 0 0 0 0 0 5 0 0 0 0 0 0 62 4 28 0 0 0 95 0 0 0.942 31 0.36
25 25 A 0 0 4 0 0 0 1 0 0 0 0 95 0 0 0 0 0 0 0 0 95 0 0 0.233 7 0.86
26 26 A 0 0 0 0 0 0 0 4 27 0 5 0 0 0 0 0 0 0 37 26 95 0 0 1.362 45 0.31
27 27 A 46 0 27 0 5 0 0 0 0 0 1 20 0 0 0 0 0 0 0 0 95 0 0 1.236 41 0.49
28 28 A 0 0 0 0 0 0 0 100 0 0 0 0 0 0 0 0 0 0 0 0 95 0 0 0.000 0 1.00
29 29 A 28 0 0 0 0 0 0 0 49 4 17 0 0 0 0 0 0 0 1 0 95 0 0 1.187 39 0.27
30 30 A 1 0 0 0 0 0 0 88 1 0 1 0 0 0 1 0 0 7 0 0 95 0 0 0.493 16 0.80
31 31 A 4 0 0 0 0 0 0 0 34 0 0 62 0 0 0 0 0 0 0 0 95 0 0 0.796 26 0.45
32 32 A 0 0 0 0 0 0 0 0 0 100 0 0 0 0 0 0 0 0 0 0 94 0 0 0.000 0 1.00
## INSERTION LIST
AliNo IPOS JPOS Len Sequence
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