Complet list of 2fc6 hssp file
Complete list of 2fc6.hssp file
HSSP HOMOLOGY DERIVED SECONDARY STRUCTURE OF PROTEINS , VERSION 2.0 2011
PDBID 2FC6
THRESHOLD according to: t(L)=(290.15 * L ** -0.562) + 5
REFERENCE Sander C., Schneider R. : Database of homology-derived protein structures. Proteins, 9:56-68 (1991).
CONTACT Maintained at http://www.cmbi.ru.nl/ by Maarten L. Hekkelman
DATE file generated on 2014-05-18
HEADER TRANSCRIPTION 12-DEC-05 2FC6
COMPND MOL_ID: 1; MOLECULE: TARGET OF EGR1, MEMBER 1; CHAIN: A; FRAGMENT: ZF-
SOURCE MOL_ID: 1; ORGANISM_SCIENTIFIC: HOMO SAPIENS; ORGANISM_COMMON: HUMAN;
AUTHOR W.DANG,Y.MUTO,M.INOUE,T.KIGAWA,M.SHIROUZU,T.TERADA, S.YOKOYAMA,RIKEN S
DBREF 2FC6 A 8 44 GB 56205992 CAI21722 285 321
SEQLENGTH 50
NCHAIN 1 chain(s) in 2FC6 data set
NALIGN 5
NOTATION : ID: EMBL/SWISSPROT identifier of the aligned (homologous) protein
NOTATION : STRID: if the 3-D structure of the aligned protein is known, then STRID is the Protein Data Bank identifier as taken
NOTATION : from the database reference or DR-line of the EMBL/SWISSPROT entry
NOTATION : %IDE: percentage of residue identity of the alignment
NOTATION : %SIM (%WSIM): (weighted) similarity of the alignment
NOTATION : IFIR/ILAS: first and last residue of the alignment in the test sequence
NOTATION : JFIR/JLAS: first and last residue of the alignment in the alignend protein
NOTATION : LALI: length of the alignment excluding insertions and deletions
NOTATION : NGAP: number of insertions and deletions in the alignment
NOTATION : LGAP: total length of all insertions and deletions
NOTATION : LSEQ2: length of the entire sequence of the aligned protein
NOTATION : ACCNUM: SwissProt accession number
NOTATION : PROTEIN: one-line description of aligned protein
NOTATION : SeqNo,PDBNo,AA,STRUCTURE,BP1,BP2,ACC: sequential and PDB residue numbers, amino acid (lower case = Cys), secondary
NOTATION : structure, bridge partners, solvent exposure as in DSSP (Kabsch and Sander, Biopolymers 22, 2577-2637(1983)
NOTATION : VAR: sequence variability on a scale of 0-100 as derived from the NALIGN alignments
NOTATION : pair of lower case characters (AvaK) in the alignend sequence bracket a point of insertion in this sequence
NOTATION : dots (....) in the alignend sequence indicate points of deletion in this sequence
NOTATION : SEQUENCE PROFILE: relative frequency of an amino acid type at each position. Asx and Glx are in their
NOTATION : acid/amide form in proportion to their database frequencies
NOTATION : NOCC: number of aligned sequences spanning this position (including the test sequence)
NOTATION : NDEL: number of sequences with a deletion in the test protein at this position
NOTATION : NINS: number of sequences with an insertion in the test protein at this position
NOTATION : ENTROPY: entropy measure of sequence variability at this position
NOTATION : RELENT: relative entropy, i.e. entropy normalized to the range 0-100
NOTATION : WEIGHT: conservation weight
## PROTEINS : identifier and alignment statistics
NR. ID STRID %IDE %WSIM IFIR ILAS JFIR JLAS LALI NGAP LGAP LSEQ2 ACCNUM PROTEIN
1 : J3SEB7_CROAD 0.49 0.63 8 44 258 298 41 1 4 537 J3SEB7 Target of EGR1 protein 1-like OS=Crotalus adamanteus PE=2 SV=1
2 : G1KQR3_ANOCA 0.44 0.66 8 44 273 313 41 1 4 553 G1KQR3 Uncharacterized protein OS=Anolis carolinensis GN=TOE1 PE=4 SV=2
3 : C3YIK6_BRAFL 0.41 0.59 7 43 260 300 41 1 4 463 C3YIK6 Putative uncharacterized protein OS=Branchiostoma floridae GN=BRAFLDRAFT_287482 PE=4 SV=1
4 : C3YIK8_BRAFL 0.41 0.59 7 43 256 296 41 1 4 454 C3YIK8 Putative uncharacterized protein (Fragment) OS=Branchiostoma floridae GN=BRAFLDRAFT_146106 PE=4 SV=1
5 : C1G5Y0_PARBD 0.39 0.49 5 49 272 320 49 1 4 516 C1G5Y0 CCCH zinc finger protein OS=Paracoccidioides brasiliensis (strain Pb18) GN=PADG_02585 PE=4 SV=1
## ALIGNMENTS 1 - 5
SeqNo PDBNo AA STRUCTURE BP1 BP2 ACC NOCC VAR ....:....1....:....2....:....3....:....4....:....5....:....6....:....7
1 1 A G 0 0 126 1 0
2 2 A S + 0 0 135 1 0
3 3 A S + 0 0 121 1 0
4 4 A G + 0 0 66 1 0
5 5 A S - 0 0 118 2 0 S
6 6 A S - 0 0 128 2 80 T
7 7 A G - 0 0 52 4 43 DDG
8 8 A C + 0 0 139 6 22 CCCCS
9 9 A C - 0 0 115 6 31 SSCCC
10 10 A L - 0 0 122 6 8 LLLLF
11 11 A P > - 0 0 85 6 57 PSPPK
12 12 A P T 3 S+ 0 0 132 6 47 DDDDG
13 13 A A T 3 S- 0 0 83 6 99 vinnp
14 14 A T S < S- 0 0 117 6 61 tntti
15 15 A H - 0 0 155 6 53 DDQQH
16 16 A R - 0 0 166 6 76 STSSD
17 17 A P - 0 0 124 6 65 AATTP
18 18 A H - 0 0 148 6 77 NNTTH
19 19 A P - 0 0 67 6 83 KKVVK
20 20 A T S S- 0 0 137 6 39 IVIIV
21 21 A S - 0 0 61 6 79 VTPPA
22 22 A I B -a 41 0A 60 6 76 ITYYI
23 23 A C - 0 0 9 6 0 CCCCC
24 24 A D S > S+ 0 0 112 6 58 QQEEK
25 25 A N H >>S+ 0 0 52 6 80 PTQQE
26 26 A F H 45S+ 0 0 56 6 4 FFYYF
27 27 A S H 45S- 0 0 52 6 80 SSAAL
28 28 A A H <5S+ 0 0 74 6 36 AAAAQ
29 29 A Y T <5S- 0 0 164 6 82 YYHHT
30 30 A G < + 0 0 23 6 0 GGGGG
31 31 A W - 0 0 156 6 97 WWTTK
32 32 A C > - 0 0 15 6 0 CCCCC
33 33 A P T 3 S+ 0 0 88 6 0 PPPPP
34 34 A L T >> S- 0 0 99 6 93 DDKKA
35 35 A G G X4 - 0 0 25 6 0 GGGGG
36 36 A P G 34 S+ 0 0 113 6 71 LPVVL
37 37 A Q G <4 S+ 0 0 158 6 104 KRLLA
38 38 A C << - 0 0 13 6 0 CCCCC
39 39 A P S S+ 0 0 111 6 72 TSPPD
40 40 A Q S S- 0 0 73 6 44 QQQQL
41 41 A S B -a 22 0A 56 6 0 SSSSS
42 42 A H + 0 0 46 6 0 HHHHH
43 43 A D - 0 0 88 6 31 NNDDD
44 44 A I + 0 0 97 4 68 II P
45 45 A S - 0 0 105 2 0 S
46 46 A G - 0 0 59 2 80 P
47 47 A P - 0 0 117 2 93 E
48 48 A S - 0 0 119 2 93 R
49 49 A S 0 0 129 2 0 S
50 50 A G 0 0 123 1 0
## SEQUENCE PROFILE AND ENTROPY
SeqNo PDBNo V L I M F W Y G A P S T C H R K Q E N D NOCC NDEL NINS ENTROPY RELENT WEIGHT
1 1 A 0 0 0 0 0 0 0 100 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0.000 0 1.00
2 2 A 0 0 0 0 0 0 0 0 0 0 100 0 0 0 0 0 0 0 0 0 1 0 0 0.000 0 1.00
3 3 A 0 0 0 0 0 0 0 0 0 0 100 0 0 0 0 0 0 0 0 0 1 0 0 0.000 0 1.00
4 4 A 0 0 0 0 0 0 0 100 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0.000 0 1.00
5 5 A 0 0 0 0 0 0 0 0 0 0 100 0 0 0 0 0 0 0 0 0 2 0 0 0.000 0 1.00
6 6 A 0 0 0 0 0 0 0 0 0 0 50 50 0 0 0 0 0 0 0 0 2 0 0 0.693 23 0.20
7 7 A 0 0 0 0 0 0 0 50 0 0 0 0 0 0 0 0 0 0 0 50 4 0 0 0.693 23 0.56
8 8 A 0 0 0 0 0 0 0 0 0 0 17 0 83 0 0 0 0 0 0 0 6 0 0 0.451 15 0.78
9 9 A 0 0 0 0 0 0 0 0 0 0 33 0 67 0 0 0 0 0 0 0 6 0 0 0.637 21 0.69
10 10 A 0 83 0 0 17 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 6 0 0 0.451 15 0.92
11 11 A 0 0 0 0 0 0 0 0 0 67 17 0 0 0 0 17 0 0 0 0 6 0 0 0.868 28 0.42
12 12 A 0 0 0 0 0 0 0 17 0 17 0 0 0 0 0 0 0 0 0 67 6 0 0 0.868 28 0.53
13 13 A 17 0 17 0 0 0 0 0 17 17 0 0 0 0 0 0 0 0 33 0 6 0 5 1.561 52 0.01
14 14 A 0 0 17 0 0 0 0 0 0 0 0 67 0 0 0 0 0 0 17 0 6 0 0 0.868 28 0.38
15 15 A 0 0 0 0 0 0 0 0 0 0 0 0 0 33 0 0 33 0 0 33 6 0 0 1.099 36 0.47
16 16 A 0 0 0 0 0 0 0 0 0 0 50 17 0 0 17 0 0 0 0 17 6 0 0 1.242 41 0.23
17 17 A 0 0 0 0 0 0 0 0 33 33 0 33 0 0 0 0 0 0 0 0 6 0 0 1.099 36 0.34
18 18 A 0 0 0 0 0 0 0 0 0 0 0 33 0 33 0 0 0 0 33 0 6 0 0 1.099 36 0.22
19 19 A 33 0 0 0 0 0 0 0 0 17 0 0 0 0 0 50 0 0 0 0 6 0 0 1.011 33 0.16
20 20 A 33 0 50 0 0 0 0 0 0 0 0 17 0 0 0 0 0 0 0 0 6 0 0 1.011 33 0.60
21 21 A 17 0 0 0 0 0 0 0 17 33 17 17 0 0 0 0 0 0 0 0 6 0 0 1.561 52 0.20
22 22 A 0 0 50 0 0 0 33 0 0 0 0 17 0 0 0 0 0 0 0 0 6 0 0 1.011 33 0.23
23 23 A 0 0 0 0 0 0 0 0 0 0 0 0 100 0 0 0 0 0 0 0 6 0 0 0.000 0 1.00
24 24 A 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 17 33 33 0 17 6 0 0 1.330 44 0.41
25 25 A 0 0 0 0 0 0 0 0 0 17 0 17 0 0 0 0 33 17 17 0 6 0 0 1.561 52 0.19
26 26 A 0 0 0 0 67 0 33 0 0 0 0 0 0 0 0 0 0 0 0 0 6 0 0 0.637 21 0.96
27 27 A 0 17 0 0 0 0 0 0 33 0 50 0 0 0 0 0 0 0 0 0 6 0 0 1.011 33 0.19
28 28 A 0 0 0 0 0 0 0 0 83 0 0 0 0 0 0 0 17 0 0 0 6 0 0 0.451 15 0.64
29 29 A 0 0 0 0 0 0 50 0 0 0 0 17 0 33 0 0 0 0 0 0 6 0 0 1.011 33 0.18
30 30 A 0 0 0 0 0 0 0 100 0 0 0 0 0 0 0 0 0 0 0 0 6 0 0 0.000 0 1.00
31 31 A 0 0 0 0 0 50 0 0 0 0 0 33 0 0 0 17 0 0 0 0 6 0 0 1.011 33 0.02
32 32 A 0 0 0 0 0 0 0 0 0 0 0 0 100 0 0 0 0 0 0 0 6 0 0 0.000 0 1.00
33 33 A 0 0 0 0 0 0 0 0 0 100 0 0 0 0 0 0 0 0 0 0 6 0 0 0.000 0 1.00
34 34 A 0 17 0 0 0 0 0 0 17 0 0 0 0 0 0 33 0 0 0 33 6 0 0 1.330 44 0.06
35 35 A 0 0 0 0 0 0 0 100 0 0 0 0 0 0 0 0 0 0 0 0 6 0 0 0.000 0 1.00
36 36 A 33 33 0 0 0 0 0 0 0 33 0 0 0 0 0 0 0 0 0 0 6 0 0 1.099 36 0.29
37 37 A 0 33 0 0 0 0 0 0 17 0 0 0 0 0 17 17 17 0 0 0 6 0 0 1.561 52 -0.05
38 38 A 0 0 0 0 0 0 0 0 0 0 0 0 100 0 0 0 0 0 0 0 6 0 0 0.000 0 1.00
39 39 A 0 0 0 0 0 0 0 0 0 50 17 17 0 0 0 0 0 0 0 17 6 0 0 1.242 41 0.27
40 40 A 0 17 0 0 0 0 0 0 0 0 0 0 0 0 0 0 83 0 0 0 6 0 0 0.451 15 0.55
41 41 A 0 0 0 0 0 0 0 0 0 0 100 0 0 0 0 0 0 0 0 0 6 0 0 0.000 0 1.00
42 42 A 0 0 0 0 0 0 0 0 0 0 0 0 0 100 0 0 0 0 0 0 6 0 0 0.000 0 1.00
43 43 A 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 33 67 6 0 0 0.637 21 0.69
44 44 A 0 0 75 0 0 0 0 0 0 25 0 0 0 0 0 0 0 0 0 0 4 0 0 0.562 18 0.31
45 45 A 0 0 0 0 0 0 0 0 0 0 100 0 0 0 0 0 0 0 0 0 2 0 0 0.000 0 1.00
46 46 A 0 0 0 0 0 0 0 50 0 50 0 0 0 0 0 0 0 0 0 0 2 0 0 0.693 23 0.20
47 47 A 0 0 0 0 0 0 0 0 0 50 0 0 0 0 0 0 0 50 0 0 2 0 0 0.693 23 0.07
48 48 A 0 0 0 0 0 0 0 0 0 0 50 0 0 0 50 0 0 0 0 0 2 0 0 0.693 23 0.07
49 49 A 0 0 0 0 0 0 0 0 0 0 100 0 0 0 0 0 0 0 0 0 2 0 0 0.000 0 1.00
50 50 A 0 0 0 0 0 0 0 100 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0.000 0 1.00
## INSERTION LIST
AliNo IPOS JPOS Len Sequence
1 7 264 4 vSQAQt
2 7 279 4 iSQPGn
3 8 267 4 nLLNTt
4 8 263 4 nLLNTt
5 10 281 4 pNCPYi
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