Complet list of 2eti hssp file
Complete list of 2eti.hssp file
HSSP HOMOLOGY DERIVED SECONDARY STRUCTURE OF PROTEINS , VERSION 2.0 2011
PDBID 2ETI
THRESHOLD according to: t(L)=(290.15 * L ** -0.562) + 5
REFERENCE Sander C., Schneider R. : Database of homology-derived protein structures. Proteins, 9:56-68 (1991).
CONTACT Maintained at http://www.cmbi.ru.nl/ by Maarten L. Hekkelman
DATE file generated on 2014-05-18
HEADER PROTEIN INHIBITOR 15-JUL-91 2ETI
COMPND MOL_ID: 1; MOLECULE: TRYPSIN INHIBITOR II; CHAIN: A; ENGINEERED: YES
SOURCE MOL_ID: 1; ORGANISM_SCIENTIFIC: ECBALLIUM ELATERIUM; ORGANISM_COMMON:
AUTHOR A.HEITZ,L.CHICHE,D.LE-NGUYEN,B.CASTRO
DBREF 2ETI A 1 28 UNP P12071 ITR2_ECBEL 1 28
SEQLENGTH 28
NCHAIN 1 chain(s) in 2ETI data set
NALIGN 40
NOTATION : ID: EMBL/SWISSPROT identifier of the aligned (homologous) protein
NOTATION : STRID: if the 3-D structure of the aligned protein is known, then STRID is the Protein Data Bank identifier as taken
NOTATION : from the database reference or DR-line of the EMBL/SWISSPROT entry
NOTATION : %IDE: percentage of residue identity of the alignment
NOTATION : %SIM (%WSIM): (weighted) similarity of the alignment
NOTATION : IFIR/ILAS: first and last residue of the alignment in the test sequence
NOTATION : JFIR/JLAS: first and last residue of the alignment in the alignend protein
NOTATION : LALI: length of the alignment excluding insertions and deletions
NOTATION : NGAP: number of insertions and deletions in the alignment
NOTATION : LGAP: total length of all insertions and deletions
NOTATION : LSEQ2: length of the entire sequence of the aligned protein
NOTATION : ACCNUM: SwissProt accession number
NOTATION : PROTEIN: one-line description of aligned protein
NOTATION : SeqNo,PDBNo,AA,STRUCTURE,BP1,BP2,ACC: sequential and PDB residue numbers, amino acid (lower case = Cys), secondary
NOTATION : structure, bridge partners, solvent exposure as in DSSP (Kabsch and Sander, Biopolymers 22, 2577-2637(1983)
NOTATION : VAR: sequence variability on a scale of 0-100 as derived from the NALIGN alignments
NOTATION : pair of lower case characters (AvaK) in the alignend sequence bracket a point of insertion in this sequence
NOTATION : dots (....) in the alignend sequence indicate points of deletion in this sequence
NOTATION : SEQUENCE PROFILE: relative frequency of an amino acid type at each position. Asx and Glx are in their
NOTATION : acid/amide form in proportion to their database frequencies
NOTATION : NOCC: number of aligned sequences spanning this position (including the test sequence)
NOTATION : NDEL: number of sequences with a deletion in the test protein at this position
NOTATION : NINS: number of sequences with an insertion in the test protein at this position
NOTATION : ENTROPY: entropy measure of sequence variability at this position
NOTATION : RELENT: relative entropy, i.e. entropy normalized to the range 0-100
NOTATION : WEIGHT: conservation weight
## PROTEINS : identifier and alignment statistics
NR. ID STRID %IDE %WSIM IFIR ILAS JFIR JLAS LALI NGAP LGAP LSEQ2 ACCNUM PROTEIN
1 : ITR2_ECBEL 2ETI 1.00 1.00 1 28 1 28 28 0 0 30 P12071 Trypsin inhibitor 2 OS=Ecballium elaterium PE=1 SV=2
2 : ITR2_BRYDI 0.86 0.93 1 28 2 29 28 0 0 29 P11968 Trypsin inhibitor 2 OS=Bryonia dioica PE=1 SV=1
3 : ITR4_CYCPE 0.78 0.81 2 28 3 29 27 0 0 29 P83395 Trypsin inhibitor 4 OS=Cyclanthera pedata PE=1 SV=1
4 : ITR1_CUCMA 1PPE 0.74 0.85 2 28 3 29 27 0 0 29 P01074 Trypsin inhibitor 1 OS=Cucurbita maxima PE=1 SV=1
5 : ITR1_MOMRE 0.74 0.85 2 28 3 29 27 0 0 29 P17680 Trypsin inhibitor 1 OS=Momordica repens PE=1 SV=1
6 : ITR3_CUCMC 0.74 0.89 2 28 4 30 27 0 0 30 P32041 Trypsin inhibitor 3 OS=Cucumis melo var. conomon PE=1 SV=1
7 : ITR3_CYCPE 0.74 0.81 2 28 3 29 27 0 0 29 P83394 Trypsin inhibitor 3 OS=Cyclanthera pedata PE=1 SV=1
8 : ITR3_LUFAE 0.74 0.78 2 28 3 29 27 0 0 29 Q9S8I2 Trypsin inhibitor 3 OS=Luffa aegyptiaca PE=1 SV=1
9 : ITR4_CUCMA 0.74 0.89 2 28 6 32 27 0 0 32 P07853 Trypsin inhibitor 4 OS=Cucurbita maxima PE=1 SV=2
10 : ITR4_LUFAE 0.74 0.78 2 28 2 28 27 0 0 28 P35628 Trypsin inhibitor 4 OS=Luffa aegyptiaca PE=1 SV=1
11 : ITR5_CYCPE 0.74 0.81 2 28 3 29 27 0 0 29 P83396 Trypsin inhibitor 5 OS=Cyclanthera pedata PE=1 SV=1
12 : ITR6_CYCPE 0.74 0.89 2 28 4 30 27 0 0 30 P83397 Trypsin inhibitor 6 OS=Cyclanthera pedata PE=1 SV=1
13 : ITR7_CYCPE 0.74 0.89 2 28 4 30 27 0 0 30 P83398 Trypsin inhibitor 7 OS=Cyclanthera pedata PE=1 SV=1
14 : Q9S8W2_CUCME 0.74 0.89 2 28 4 30 27 0 0 30 Q9S8W2 CMCTI-III=TRYPSIN inhibitor OS=Cucumis melo PE=3 SV=1
15 : Q9S8W3_CUCME 0.74 0.89 2 28 2 28 27 0 0 28 Q9S8W3 CMCTI-I=TRYPSIN inhibitor OS=Cucumis melo PE=3 SV=1
16 : Q9S8D2_CUCME 0.71 0.82 1 28 2 29 28 0 0 29 Q9S8D2 CMETI-B=TRYPSIN inhibitor OS=Cucumis melo PE=3 SV=1
17 : ITI1_LAGSI 0.70 0.85 2 28 4 30 27 0 0 30 P26771 Trypsin inhibitor 1 OS=Lagenaria siceraria PE=1 SV=2
18 : ITR1_LUFAE 0.70 0.78 2 28 3 29 27 0 0 29 P25849 Trypsin inhibitor 1 OS=Luffa aegyptiaca PE=1 SV=1
19 : ITR2_SECED 0.70 0.85 2 28 6 32 27 0 0 32 P84451 Trypsin inhibitor 2b OS=Sechium edule PE=1 SV=1
20 : ITR2_LUFAE 0.68 0.75 2 28 3 30 28 1 1 30 P25850 Trypsin inhibitor 2 OS=Luffa aegyptiaca PE=1 SV=1
21 : ITR3_MOMCH 0.68 0.86 1 28 3 30 28 0 0 30 Q9S747 Trypsin inhibitor 3 OS=Momordica charantia PE=1 SV=1
22 : ITR4_CUCSA 0.68 0.86 2 28 3 30 28 1 1 30 P10292 Trypsin inhibitor 4 OS=Cucumis sativus PE=1 SV=1
23 : ITR1_CITLA 0.67 0.85 2 28 4 30 27 0 0 30 P11969 Trypsin inhibitor 1 OS=Citrullus lanatus PE=1 SV=1
24 : ITR3_CUCPE 2BTC 0.67 0.85 2 28 6 32 27 0 0 32 P10293 Trypsin inhibitor 3 OS=Cucurbita pepo PE=1 SV=1
25 : ITR5_SECED 0.67 0.85 2 28 1 27 27 0 0 27 P84452 Trypsin inhibitor 5 OS=Sechium edule PE=1 SV=1
26 : ITR1_TRIKI 0.64 0.79 1 28 38 65 28 0 0 65 Q43667 Trypsin inhibitor 1 OS=Trichosanthes kirilowii PE=3 SV=1
27 : ITR2B_CUCSA 0.64 0.86 2 28 3 30 28 1 1 32 P10291 Trypsin inhibitor 2b OS=Cucumis sativus PE=1 SV=1
28 : ITR1_MOMCH 0.63 0.85 2 28 4 30 27 0 0 30 P10294 Trypsin inhibitor 1 OS=Momordica charantia PE=1 SV=1
29 : ITR5_LUFAE 0.63 0.78 2 28 37 63 27 0 0 63 P34950 Trypsin inhibitor 5 OS=Luffa aegyptiaca PE=1 SV=1
30 : A6N2U8_MOMCH 0.59 0.70 2 28 3 28 27 1 1 28 A6N2U8 Trypsin inhibitor 2 (Fragment) OS=Momordica charantia PE=3 SV=1
31 : IELI_MOMCH 0.59 0.67 2 28 6 31 27 1 1 31 P10296 Elastase inhibitor 4 OS=Momordica charantia PE=1 SV=2
32 : ITR1_MOMCO 0.59 0.85 2 28 8 34 27 0 0 34 P82408 Trypsin inhibitor 1 OS=Momordica cochinchinensis PE=1 SV=1
33 : ITR2_MOMCH 1F2S 0.59 0.70 2 28 3 28 27 1 1 28 P10295 Trypsin inhibitor 2 OS=Momordica charantia PE=1 SV=1
34 : ITR3_MOMCO 2LJS 0.57 0.82 1 28 3 30 28 0 0 30 P82410 Trypsin inhibitor 3 OS=Momordica cochinchinensis PE=1 SV=1
35 : J3R2I9_MOMCO 0.57 0.82 1 28 304 331 28 0 0 331 J3R2I9 Two inhibitor peptide topologies 2 (Precursor) OS=Momordica cochinchinensis GN=TIPTOP2 PE=2 SV=1
36 : J3R9Z5_MOMCO 0.57 0.82 1 28 404 431 28 0 0 431 J3R9Z5 Two inhibitor peptide topologies 3 (Precursor) OS=Momordica cochinchinensis GN=TIPTOP3 PE=2 SV=1
37 : J3RCD6_MOMCO 0.57 0.82 1 28 254 281 28 0 0 281 J3RCD6 Two inhibitor peptide topologies 1 (Precursor) OS=Momordica cochinchinensis GN=TIPTOP1 PE=2 SV=1
38 : J7IN40_9ROSI 0.57 0.82 1 28 303 330 28 0 0 330 J7IN40 Two inhibitor peptide topologies 2 OS=Momordica sphaeroidea GN=TIPTOP2 PE=3 SV=1
39 : ITR2_MOMCO 4GUX 0.56 0.85 2 28 8 34 27 0 0 34 P82409 Trypsin inhibitor 2 OS=Momordica cochinchinensis PE=1 SV=1
40 : ITRA_MOMCH 1MCT 0.54 0.71 1 28 2 28 28 1 1 28 P30709 Trypsin inhibitor A OS=Momordica charantia PE=1 SV=1
## ALIGNMENTS 1 - 40
SeqNo PDBNo AA STRUCTURE BP1 BP2 ACC NOCC VAR ....:....1....:....2....:....3....:....4....:....5....:....6....:....7
1 1 A G 0 0 87 12 43 GG G G A AAAAA S
2 2 A a + 0 0 24 41 0 CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
3 3 A P S S+ 0 0 58 41 0 PPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPP
4 4 A R S S- 0 0 192 41 22 RRRRRKRRRRRRRKKRRRKRRRRKRRKRRRLKRRRRRRKR
5 5 A I S S+ 0 0 119 41 0 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII
6 6 A L + 0 0 128 41 21 LLLLLLLLLLLLLLLLYLLLLLYLLLLLLWWLWLLLLLLW
7 7 A M S S- 0 0 24 41 37 MMMMMMMMMMMMMMMMMMMMKMMMMMMKMMMQMKKKKKKM
8 8 A R - 0 0 155 41 59 RREEEKEEKPEKKKKKEEREQKEEKPKQPEEREKKKKKKE
9 9 A b + 0 0 15 41 0 CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
10 10 A K S S+ 0 0 182 41 33 KKKKKKKSKSKKKKKKKSKSKKKKKKKKKKKRKRRRRRRT
11 11 A Q S S- 0 0 117 41 72 QRAKRQASKSAKKQQTHSRSQHRKLVHRTRRRRRRRRRRR
12 12 A D S > S+ 0 0 77 41 3 DDDDDDDDDDDDDDDDDDDDDDDDDNDDDDDDDDDDDDDD
13 13 A S T 3 S+ 0 0 88 41 22 SSSSSSSSSSSSSSSRSSSSSSASTDSSDSSSSSSSSSSS
14 14 A D T 3 S+ 0 0 41 41 0 DDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDD
15 15 A c S < S- 0 0 23 41 0 CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
16 16 A L - 0 0 81 41 54 LLLLLLLLLLLLLLLLLLLLPLLLFLLPMMLPMPPPPPPM
17 17 A A S S+ 0 0 95 41 59 AAAAALAAAAAAALLTAAAAGPAAPRLGLAAGAGGGGGGA
18 18 A G S S+ 0 0 78 41 53 GGQEQDQEEEQEEDDGDEKEEGDETGDEDQQAQEEEEEAK
19 19 A a - 0 0 11 41 0 CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
20 20 A V - 0 0 111 41 36 VVIVVVIIVIIIIVVTVITIIVVITKVIRIIIIIIIIIII
21 21 A b B +A 27 0A 39 41 0 CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
22 22 A G > + 0 0 46 41 79 GQQLKLELLLQEQLLKLLQLMLLLRLLMLVVRVKKQKQRV
23 23 A P T 3 S- 0 0 100 41 66 PKEERKEEEEEEEKKREEEEAEQEPSEASDDGDEGGGGGA
24 24 A N T 3 S- 0 0 149 41 61 NNNHQESNHNSHHEENHQSqHhHHSNdHNGGNGNNNNNNG
25 25 A G S < S+ 0 0 27 37 3 GGGGGGGGGGGGGGGGGGGgGeGGGGgGG..G.GGGGGG.
26 26 A F - 0 0 47 41 29 FYFYYFFFYFFFFFFYIFYFFYIYFYYFYHHYHYYYYYYH
27 27 A c B A 21 0A 2 41 0 CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
28 28 A G 0 0 61 41 0 GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG
## SEQUENCE PROFILE AND ENTROPY
SeqNo PDBNo V L I M F W Y G A P S T C H R K Q E N D NOCC NDEL NINS ENTROPY RELENT WEIGHT
1 1 A 0 0 0 0 0 0 0 42 50 0 8 0 0 0 0 0 0 0 0 0 12 0 0 0.918 30 0.56
2 2 A 0 0 0 0 0 0 0 0 0 0 0 0 100 0 0 0 0 0 0 0 41 0 0 0.000 0 1.00
3 3 A 0 0 0 0 0 0 0 0 0 100 0 0 0 0 0 0 0 0 0 0 41 0 0 0.000 0 1.00
4 4 A 0 2 0 0 0 0 0 0 0 0 0 0 0 0 78 20 0 0 0 0 41 0 0 0.603 20 0.78
5 5 A 0 0 100 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 41 0 0 0.000 0 1.00
6 6 A 0 85 0 0 0 10 5 0 0 0 0 0 0 0 0 0 0 0 0 0 41 0 0 0.509 17 0.79
7 7 A 0 0 0 78 0 0 0 0 0 0 0 0 0 0 0 20 2 0 0 0 41 0 0 0.603 20 0.62
8 8 A 0 0 0 0 0 0 0 0 0 7 0 0 0 0 12 39 5 37 0 0 41 0 0 1.330 44 0.41
9 9 A 0 0 0 0 0 0 0 0 0 0 0 0 100 0 0 0 0 0 0 0 41 0 0 0.000 0 1.00
10 10 A 0 0 0 0 0 0 0 0 0 0 10 2 0 0 17 71 0 0 0 0 41 0 0 0.864 28 0.66
11 11 A 2 2 0 0 0 0 0 0 7 0 10 5 0 7 39 12 15 0 0 0 41 0 0 1.843 61 0.27
12 12 A 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 98 41 0 0 0.115 3 0.97
13 13 A 0 0 0 0 0 0 0 0 2 0 88 2 0 0 2 0 0 0 0 5 41 0 0 0.533 17 0.77
14 14 A 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 100 41 0 0 0.000 0 1.00
15 15 A 0 0 0 0 0 0 0 0 0 0 0 0 100 0 0 0 0 0 0 0 41 0 0 0.000 0 1.00
16 16 A 0 66 0 10 2 0 0 0 0 22 0 0 0 0 0 0 0 0 0 0 41 0 0 0.926 30 0.46
17 17 A 0 12 0 0 0 0 0 22 56 5 0 2 0 0 2 0 0 0 0 0 41 0 0 1.242 41 0.40
18 18 A 0 0 0 0 0 0 0 15 5 0 0 2 0 0 0 5 17 39 0 17 41 0 0 1.637 54 0.47
19 19 A 0 0 0 0 0 0 0 0 0 0 0 0 100 0 0 0 0 0 0 0 41 0 0 0.000 0 1.00
20 20 A 32 0 56 0 0 0 0 0 0 0 0 7 0 0 2 2 0 0 0 0 41 0 0 1.061 35 0.64
21 21 A 0 0 0 0 0 0 0 0 0 0 0 0 100 0 0 0 0 0 0 0 41 0 0 0.000 0 1.00
22 22 A 10 39 0 5 0 0 0 5 0 0 0 0 0 0 7 12 17 5 0 0 41 0 0 1.786 59 0.20
23 23 A 0 0 0 0 0 0 0 15 7 7 5 0 0 0 5 10 2 41 0 7 41 0 0 1.833 61 0.33
24 24 A 0 0 0 0 0 0 0 10 0 0 10 0 0 24 0 0 7 7 39 2 41 4 3 1.639 54 0.38
25 25 A 0 0 0 0 0 0 0 97 0 0 0 0 0 0 0 0 0 3 0 0 37 0 0 0.124 4 0.96
26 26 A 0 0 5 0 41 0 44 0 0 0 0 0 0 10 0 0 0 0 0 0 41 0 0 1.101 36 0.70
27 27 A 0 0 0 0 0 0 0 0 0 0 0 0 100 0 0 0 0 0 0 0 41 0 0 0.000 0 1.00
28 28 A 0 0 0 0 0 0 0 100 0 0 0 0 0 0 0 0 0 0 0 0 41 0 0 0.000 0 1.00
## INSERTION LIST
AliNo IPOS JPOS Len Sequence
20 24 26 1 qDg
22 24 26 1 hIe
27 24 26 1 dIg
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