Complet list of 2esy hssp file
Complete list of 2esy.hssp file
HSSP HOMOLOGY DERIVED SECONDARY STRUCTURE OF PROTEINS , VERSION 2.0 2011
PDBID 2ESY
THRESHOLD according to: t(L)=(290.15 * L ** -0.562) + 5
REFERENCE Sander C., Schneider R. : Database of homology-derived protein structures. Proteins, 9:56-68 (1991).
CONTACT Maintained at http://www.cmbi.ru.nl/ by Maarten L. Hekkelman
DATE file generated on 2014-05-18
HEADER LIPID BINDING PROTEIN 27-OCT-05 2ESY
COMPND MOL_ID: 1; MOLECULE: LUNG SURFACTANT PROTEIN C; CHAIN: A; ENGINEERED:
SOURCE MOL_ID: 1; SYNTHETIC: YES; OTHER_DETAILS: PEPTIDE SYNTHESIS USING F-MO
AUTHOR J.LI,E.LIEPINSH,A.ALMLEN,J.THYBERG,T.CURSTEDT,H.JORNVALL, J.JOHANSSON
DBREF 2ESY A 1 32 PDB 2ESY 2ESY 1 32
SEQLENGTH 31
NCHAIN 1 chain(s) in 2ESY data set
NALIGN 35
NOTATION : ID: EMBL/SWISSPROT identifier of the aligned (homologous) protein
NOTATION : STRID: if the 3-D structure of the aligned protein is known, then STRID is the Protein Data Bank identifier as taken
NOTATION : from the database reference or DR-line of the EMBL/SWISSPROT entry
NOTATION : %IDE: percentage of residue identity of the alignment
NOTATION : %SIM (%WSIM): (weighted) similarity of the alignment
NOTATION : IFIR/ILAS: first and last residue of the alignment in the test sequence
NOTATION : JFIR/JLAS: first and last residue of the alignment in the alignend protein
NOTATION : LALI: length of the alignment excluding insertions and deletions
NOTATION : NGAP: number of insertions and deletions in the alignment
NOTATION : LGAP: total length of all insertions and deletions
NOTATION : LSEQ2: length of the entire sequence of the aligned protein
NOTATION : ACCNUM: SwissProt accession number
NOTATION : PROTEIN: one-line description of aligned protein
NOTATION : SeqNo,PDBNo,AA,STRUCTURE,BP1,BP2,ACC: sequential and PDB residue numbers, amino acid (lower case = Cys), secondary
NOTATION : structure, bridge partners, solvent exposure as in DSSP (Kabsch and Sander, Biopolymers 22, 2577-2637(1983)
NOTATION : VAR: sequence variability on a scale of 0-100 as derived from the NALIGN alignments
NOTATION : pair of lower case characters (AvaK) in the alignend sequence bracket a point of insertion in this sequence
NOTATION : dots (....) in the alignend sequence indicate points of deletion in this sequence
NOTATION : SEQUENCE PROFILE: relative frequency of an amino acid type at each position. Asx and Glx are in their
NOTATION : acid/amide form in proportion to their database frequencies
NOTATION : NOCC: number of aligned sequences spanning this position (including the test sequence)
NOTATION : NDEL: number of sequences with a deletion in the test protein at this position
NOTATION : NINS: number of sequences with an insertion in the test protein at this position
NOTATION : ENTROPY: entropy measure of sequence variability at this position
NOTATION : RELENT: relative entropy, i.e. entropy normalized to the range 0-100
NOTATION : WEIGHT: conservation weight
## PROTEINS : identifier and alignment statistics
NR. ID STRID %IDE %WSIM IFIR ILAS JFIR JLAS LALI NGAP LGAP LSEQ2 ACCNUM PROTEIN
1 : B4DNY9_HUMAN 0.81 0.94 1 31 12 42 31 0 0 121 B4DNY9 cDNA FLJ52871, highly similar to Pulmonary surfactant-associated protein C OS=Homo sapiens PE=2 SV=1
2 : C9JYF6_HUMAN 0.81 0.94 1 31 12 42 31 0 0 161 C9JYF6 Pulmonary surfactant-associated protein C OS=Homo sapiens GN=SFTPC PE=2 SV=2
3 : E5RG93_HUMAN 0.81 0.94 1 31 12 42 31 0 0 119 E5RG93 Uncharacterized protein OS=Homo sapiens GN=SFTPC PE=4 SV=1
4 : E5RI92_HUMAN 0.81 0.94 1 31 12 42 31 0 0 150 E5RI92 Pulmonary surfactant-associated protein C OS=Homo sapiens GN=SFTPC PE=2 SV=1
5 : F7HAC7_MACMU 0.81 0.94 1 31 12 42 31 0 0 191 F7HAC7 Pulmonary surfactant-associated protein C OS=Macaca mulatta GN=SFTPC PE=4 SV=1
6 : G1L9D6_AILME 0.81 0.94 1 31 12 42 31 0 0 196 G1L9D6 Uncharacterized protein OS=Ailuropoda melanoleuca GN=SFTPC PE=4 SV=1
7 : G1SGM9_RABIT 0.81 0.94 1 31 103 133 31 0 0 279 G1SGM9 Pulmonary surfactant-associated protein C OS=Oryctolagus cuniculus GN=SFTPC PE=4 SV=2
8 : G5B9P9_HETGA 0.81 0.94 1 31 12 42 31 0 0 200 G5B9P9 Pulmonary surfactant-associated protein C OS=Heterocephalus glaber GN=GW7_20725 PE=4 SV=1
9 : G7N0N0_MACMU 0.81 0.94 1 31 12 42 31 0 0 197 G7N0N0 Pulmonary surfactant-associated protein C OS=Macaca mulatta GN=EGK_18752 PE=4 SV=1
10 : G7PCP6_MACFA 0.81 0.94 1 31 12 42 31 0 0 197 G7PCP6 Pulmonary surfactant-associated protein C OS=Macaca fascicularis GN=EGM_17143 PE=4 SV=1
11 : H0WQW3_OTOGA 0.81 0.94 1 31 12 42 31 0 0 192 H0WQW3 Uncharacterized protein OS=Otolemur garnettii GN=SFTPC PE=4 SV=1
12 : H2PPR4_PONAB 0.81 0.94 1 31 50 80 31 0 0 229 H2PPR4 Uncharacterized protein OS=Pongo abelii GN=SFTPC PE=4 SV=2
13 : H2QVU6_PANTR 0.81 0.94 1 31 12 42 31 0 0 197 H2QVU6 Uncharacterized protein OS=Pan troglodytes GN=SFTPC PE=4 SV=1
14 : PSPC_HUMAN 2YAD 0.81 0.94 1 31 12 42 31 0 0 197 P11686 Pulmonary surfactant-associated protein C OS=Homo sapiens GN=SFTPC PE=1 SV=2
15 : PSPC_MACMU 0.81 0.94 1 31 12 42 31 0 0 191 P55152 Pulmonary surfactant-associated protein C OS=Macaca mulatta GN=SFTPC PE=2 SV=1
16 : PSPC_RABIT 0.81 0.94 1 31 12 42 31 0 0 188 P22398 Pulmonary surfactant-associated protein C OS=Oryctolagus cuniculus GN=SFTPC PE=1 SV=3
17 : D2H048_AILME 0.79 0.93 4 31 10 37 28 0 0 192 D2H048 Putative uncharacterized protein (Fragment) OS=Ailuropoda melanoleuca GN=PANDA_002766 PE=4 SV=1
18 : F6SF60_CALJA 0.77 0.90 1 31 12 42 31 0 0 197 F6SF60 Uncharacterized protein OS=Callithrix jacchus GN=SFTPC PE=4 SV=1
19 : F6UR56_CALJA 0.77 0.90 1 31 12 42 31 0 0 197 F6UR56 Uncharacterized protein OS=Callithrix jacchus GN=SFTPC PE=4 SV=1
20 : F6URC7_HORSE 0.77 0.90 1 31 12 42 31 0 0 190 F6URC7 Uncharacterized protein OS=Equus caballus GN=SFTPC PE=4 SV=1
21 : U3EVB1_CALJA 0.77 0.90 1 31 12 42 31 0 0 191 U3EVB1 Pulmonary surfactant-associated protein C isoform 2 proprotein OS=Callithrix jacchus GN=SFTPC PE=2 SV=1
22 : F1PGB5_CANFA 0.74 0.90 1 31 21 51 31 0 0 200 F1PGB5 Pulmonary surfactant-associated protein C OS=Canis familiaris GN=SFTPC PE=4 SV=2
23 : G1NX18_MYOLU 0.74 0.90 1 31 12 42 31 0 0 190 G1NX18 Uncharacterized protein OS=Myotis lucifugus GN=SFTPC PE=4 SV=1
24 : L5L6I3_PTEAL 0.74 0.90 1 31 12 42 31 0 0 190 L5L6I3 Pulmonary surfactant-associated protein C OS=Pteropus alecto GN=PAL_GLEAN10006763 PE=4 SV=1
25 : M3W2P6_FELCA 0.74 0.94 1 31 12 42 31 0 0 195 M3W2P6 Uncharacterized protein OS=Felis catus GN=SFTPC PE=4 SV=1
26 : S7P917_MYOBR 0.74 0.90 1 31 12 42 31 0 0 190 S7P917 Pulmonary surfactant-associated protein C OS=Myotis brandtii GN=D623_10014344 PE=4 SV=1
27 : T1W420_PANTA 0.74 0.90 1 31 21 51 31 0 0 199 T1W420 Pulmonary surfactant-associated protein C OS=Panthera tigris altaica GN=SFTPC PE=2 SV=1
28 : T1W4U2_PANTA 0.74 0.90 1 31 21 51 31 0 0 199 T1W4U2 Pulmonary surfactant-associated protein C OS=Panthera tigris altaica GN=SFTPC PE=2 SV=1
29 : G3TKR5_LOXAF 0.71 0.87 1 31 12 42 31 0 0 196 G3TKR5 Uncharacterized protein OS=Loxodonta africana GN=BMP1 PE=4 SV=1
30 : H0WCE9_CAVPO 0.71 0.90 1 31 12 42 31 0 0 191 H0WCE9 Uncharacterized protein OS=Cavia porcellus GN=Sftpc PE=4 SV=1
31 : L9JR85_TUPCH 0.71 0.94 1 31 12 42 31 0 0 1415 L9JR85 Bone morphogenetic protein 1 OS=Tupaia chinensis GN=TREES_T100017959 PE=3 SV=1
32 : M3XXP5_MUSPF 0.68 0.90 1 31 12 42 31 0 0 190 M3XXP5 Uncharacterized protein OS=Mustela putorius furo PE=4 SV=1
33 : PSPC_MOUSE 0.68 0.90 1 31 12 42 31 0 0 193 P21841 Pulmonary surfactant-associated protein C OS=Mus musculus GN=Sftpc PE=2 SV=1
34 : PSPC_NEOVI 0.68 0.90 1 31 12 42 31 0 0 190 P35245 Pulmonary surfactant-associated protein C OS=Neovison vison GN=SFTPC PE=2 SV=1
35 : Q6P8P8_MOUSE 0.68 0.90 1 31 12 42 31 0 0 193 Q6P8P8 Pulmonary surfactant-associated protein C OS=Mus musculus GN=Sftpc PE=2 SV=1
## ALIGNMENTS 1 - 35
SeqNo PDBNo AA STRUCTURE BP1 BP2 ACC NOCC VAR ....:....1....:....2....:....3....:....4....:....5....:....6....:....7
1 1 A S 0 0 161 35 20 SSSSSSSSSSSSSSSS SSSSSSSSSSSSSSNSNS
2 2 A P - 0 0 104 35 0 PPPPPPPPPPPPPPPP PPPPPPPPPPPPPPPPPP
3 3 A P - 0 0 127 35 0 PPPPPPPPPPPPPPPP PPPPPPPPPPPPPPPPPP
4 4 A D - 0 0 111 36 0 DDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDD
5 5 A Y + 0 0 215 36 0 YYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYY
6 6 A S + 0 0 98 36 0 SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
7 7 A A S S- 0 0 82 36 12 AAAAAAAAAAAAAAAAAVVAVAAAAAAAAAAAAAA
8 8 A A - 0 0 44 36 14 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAASAGAG
9 9 A P - 0 0 71 36 0 PPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPP
10 10 A R + 0 0 177 36 24 RRRRRRRRRRRRRRRRRRRRRRQRRQRRRRRQRQR
11 11 A G S S+ 0 0 88 36 18 GGGGGGGGGGGGGGGGGGGGGGGGGGGGGASGSGS
12 12 A R S S- 0 0 213 36 21 RRRRRRRRRRRRRRRRRRRRRRRQRRRRRQRRQRQ
13 13 A F S S+ 0 0 218 36 3 FFFFFFFFFFFFFFFFFFFFFLFFFFFFFFLFFFF
14 14 A G S S- 0 0 30 36 60 GGGGGGGGGGGGGGGGGGGGGGRRSRCCVRGGRGR
15 15 A I + 0 0 99 36 11 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIILILI
16 16 A P - 0 0 66 36 0 PPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPP
17 17 A F S > S+ 0 0 152 36 13 CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
18 18 A F T >> + 0 0 108 36 46 CCCCCCCCCCCCCCCCCCCCCFCCCCCCCCCFCFC
19 19 A P H 3> S+ 0 0 65 36 0 PPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPP
20 20 A V H <> S+ 0 0 84 36 42 VVVVVVVVVVVVVVVVVVVVVSVVVVVVGVVSVSV
21 21 A H H <> S+ 0 0 105 36 58 HHHHHNHHHHHHHHHHNHHPHSHHNHNNNHHSHSH
22 22 A L H >X S+ 0 0 102 36 0 LLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLL
23 23 A K H 3X S+ 0 0 137 36 0 KKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKK
24 24 A R H 3X S+ 0 0 137 36 0 RRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRR
25 25 A L H