Complet list of 2dal hssp file
Complete list of 2dal.hssp file
HSSP HOMOLOGY DERIVED SECONDARY STRUCTURE OF PROTEINS , VERSION 2.0 2011
PDBID 2DAL
THRESHOLD according to: t(L)=(290.15 * L ** -0.562) + 5
REFERENCE Sander C., Schneider R. : Database of homology-derived protein structures. Proteins, 9:56-68 (1991).
CONTACT Maintained at http://www.cmbi.ru.nl/ by Maarten L. Hekkelman
DATE file generated on 2014-05-17
HEADER STRUCTURAL GENOMICS, UNKNOWN FUNCTION 14-DEC-05 2DAL
COMPND MOL_ID: 1; MOLECULE: PROTEIN KIAA0794; CHAIN: A; FRAGMENT: UBA-LIKE DO
SOURCE MOL_ID: 1; ORGANISM_SCIENTIFIC: HOMO SAPIENS; ORGANISM_COMMON: HUMAN;
AUTHOR C.ZHAO,T.KIGAWA,T.TOMIZAWA,S.KOSHIBA,M.INOUE,S.YOKOYAMA, RIKEN STRUCTU
DBREF 2DAL A 8 56 UNP O94888 UBXD7_HUMAN 5 54
SEQLENGTH 62
NCHAIN 1 chain(s) in 2DAL data set
NALIGN 62
NOTATION : ID: EMBL/SWISSPROT identifier of the aligned (homologous) protein
NOTATION : STRID: if the 3-D structure of the aligned protein is known, then STRID is the Protein Data Bank identifier as taken
NOTATION : from the database reference or DR-line of the EMBL/SWISSPROT entry
NOTATION : %IDE: percentage of residue identity of the alignment
NOTATION : %SIM (%WSIM): (weighted) similarity of the alignment
NOTATION : IFIR/ILAS: first and last residue of the alignment in the test sequence
NOTATION : JFIR/JLAS: first and last residue of the alignment in the alignend protein
NOTATION : LALI: length of the alignment excluding insertions and deletions
NOTATION : NGAP: number of insertions and deletions in the alignment
NOTATION : LGAP: total length of all insertions and deletions
NOTATION : LSEQ2: length of the entire sequence of the aligned protein
NOTATION : ACCNUM: SwissProt accession number
NOTATION : PROTEIN: one-line description of aligned protein
NOTATION : SeqNo,PDBNo,AA,STRUCTURE,BP1,BP2,ACC: sequential and PDB residue numbers, amino acid (lower case = Cys), secondary
NOTATION : structure, bridge partners, solvent exposure as in DSSP (Kabsch and Sander, Biopolymers 22, 2577-2637(1983)
NOTATION : VAR: sequence variability on a scale of 0-100 as derived from the NALIGN alignments
NOTATION : pair of lower case characters (AvaK) in the alignend sequence bracket a point of insertion in this sequence
NOTATION : dots (....) in the alignend sequence indicate points of deletion in this sequence
NOTATION : SEQUENCE PROFILE: relative frequency of an amino acid type at each position. Asx and Glx are in their
NOTATION : acid/amide form in proportion to their database frequencies
NOTATION : NOCC: number of aligned sequences spanning this position (including the test sequence)
NOTATION : NDEL: number of sequences with a deletion in the test protein at this position
NOTATION : NINS: number of sequences with an insertion in the test protein at this position
NOTATION : ENTROPY: entropy measure of sequence variability at this position
NOTATION : RELENT: relative entropy, i.e. entropy normalized to the range 0-100
NOTATION : WEIGHT: conservation weight
## PROTEINS : identifier and alignment statistics
NR. ID STRID %IDE %WSIM IFIR ILAS JFIR JLAS LALI NGAP LGAP LSEQ2 ACCNUM PROTEIN
1 : G1QLH4_NOMLE 0.85 0.93 4 62 2 60 59 0 0 491 G1QLH4 Uncharacterized protein OS=Nomascus leucogenys GN=UBXN7 PE=4 SV=1
2 : G2HFQ8_PANTR 0.85 0.93 4 62 2 60 59 0 0 489 G2HFQ8 UBX domain-containing protein 7 OS=Pan troglodytes PE=2 SV=1
3 : H7BYF4_HUMAN 0.85 0.93 4 62 2 60 59 0 0 125 H7BYF4 UBX domain-containing protein 7 (Fragment) OS=Homo sapiens GN=UBXN7 PE=4 SV=1
4 : K7CGS0_PANTR 0.85 0.93 4 62 2 60 59 0 0 489 K7CGS0 UBX domain protein 7 OS=Pan troglodytes GN=UBXN7 PE=2 SV=1
5 : UBXN7_HUMAN 2DLX 0.85 0.93 4 62 2 60 59 0 0 489 O94888 UBX domain-containing protein 7 OS=Homo sapiens GN=UBXN7 PE=1 SV=2
6 : UBXN7_PONAB 0.85 0.93 4 62 2 60 59 0 0 489 Q5REY7 UBX domain-containing protein 7 OS=Pongo abelii GN=UBXN7 PE=2 SV=2
7 : E2R9U7_CANFA 0.83 0.93 4 62 2 60 59 0 0 489 E2R9U7 Uncharacterized protein OS=Canis familiaris GN=UBXN7 PE=4 SV=1
8 : F6TFV9_CALJA 0.83 0.93 4 62 2 60 59 0 0 212 F6TFV9 Uncharacterized protein OS=Callithrix jacchus GN=UBXN7 PE=4 SV=1
9 : F6W4A2_HORSE 0.83 0.93 4 62 2 60 59 0 0 489 F6W4A2 Uncharacterized protein OS=Equus caballus GN=UBXN7 PE=4 SV=1
10 : F6XBM9_MONDO 0.83 0.93 4 62 2 60 59 0 0 437 F6XBM9 Uncharacterized protein OS=Monodelphis domestica GN=UBXN7 PE=4 SV=2
11 : G3TX32_LOXAF 0.83 0.93 4 62 2 60 59 0 0 489 G3TX32 Uncharacterized protein OS=Loxodonta africana GN=UBXN7 PE=4 SV=1
12 : G5E8R8_MOUSE 0.83 0.93 4 62 2 60 59 0 0 489 G5E8R8 MCG129950, isoform CRA_a OS=Mus musculus GN=Ubxn7 PE=1 SV=1
13 : H0XEU0_OTOGA 0.83 0.93 4 62 2 60 59 0 0 489 H0XEU0 Uncharacterized protein OS=Otolemur garnettii GN=UBXN7 PE=4 SV=1
14 : H9FSQ6_MACMU 0.83 0.93 4 62 2 60 59 0 0 491 H9FSQ6 UBX domain-containing protein 7 OS=Macaca mulatta GN=UBXN7 PE=2 SV=1
15 : L5MIB7_MYODS 0.83 0.93 4 62 2 60 59 0 0 489 L5MIB7 UBX domain-containing protein 7 OS=Myotis davidii GN=MDA_GLEAN10011689 PE=4 SV=1
16 : S7PMF3_MYOBR 0.83 0.93 4 62 2 60 59 0 0 489 S7PMF3 UBX domain-containing protein 7 OS=Myotis brandtii GN=D623_10032711 PE=4 SV=1
17 : U3D0M7_CALJA 0.83 0.93 4 62 2 60 59 0 0 489 U3D0M7 UBX domain-containing protein 7 OS=Callithrix jacchus GN=UBXN7 PE=2 SV=1
18 : U3D9K7_CALJA 0.83 0.93 4 62 2 60 59 0 0 489 U3D9K7 UBX domain-containing protein 7 OS=Callithrix jacchus GN=UBXN7 PE=2 SV=1
19 : UBXN7_MOUSE 0.83 0.93 4 62 2 60 59 0 0 467 Q6P5G6 UBX domain-containing protein 7 OS=Mus musculus GN=Ubxn7 PE=1 SV=2
20 : K9J1B3_DESRO 0.81 0.92 4 62 2 60 59 0 0 489 K9J1B3 Putative ubiquitin regulatory protein OS=Desmodus rotundus PE=2 SV=1
21 : M3W841_FELCA 0.81 0.90 1 62 29 90 62 0 0 519 M3W841 Uncharacterized protein OS=Felis catus GN=UBXN7 PE=4 SV=1
22 : M3XXS5_MUSPF 0.81 0.90 1 62 29 90 62 0 0 519 M3XXS5 Uncharacterized protein OS=Mustela putorius furo GN=UBXN7 PE=4 SV=1
23 : Q3UGV7_MOUSE 0.81 0.93 4 62 2 60 59 0 0 489 Q3UGV7 Putative uncharacterized protein OS=Mus musculus GN=Ubxn7 PE=2 SV=1
24 : W5QGI3_SHEEP 0.81 0.93 4 62 2 60 59 0 0 489 W5QGI3 Uncharacterized protein OS=Ovis aries GN=UBXN7 PE=4 SV=1
25 : G1T304_RABIT 0.79 0.90 1 62 36 97 62 0 0 526 G1T304 Uncharacterized protein OS=Oryctolagus cuniculus GN=UBXN7 PE=4 SV=2
26 : M0R9B9_RAT 0.78 0.93 3 62 2 61 60 0 0 106 M0R9B9 Protein Ubxn7 OS=Rattus norvegicus GN=Ubxn7 PE=4 SV=1
27 : G1KSF8_ANOCA 0.76 0.95 4 62 2 60 59 0 0 488 G1KSF8 Uncharacterized protein OS=Anolis carolinensis GN=UBXN7 PE=4 SV=1
28 : H0VI81_CAVPO 0.75 0.93 3 62 2 61 60 0 0 489 H0VI81 Uncharacterized protein OS=Cavia porcellus GN=UBXN7 PE=4 SV=1
29 : Q6P3G3_DANRE 0.73 0.93 8 62 5 59 55 0 0 505 Q6P3G3 Uncharacterized protein OS=Danio rerio GN=ubxn7 PE=2 SV=2
30 : G3T7N2_LOXAF 0.71 0.84 12 62 10 60 51 0 0 467 G3T7N2 Uncharacterized protein (Fragment) OS=Loxodonta africana GN=UBXN7 PE=4 SV=1
31 : G3UFW0_LOXAF 0.71 0.84 12 62 10 60 51 0 0 490 G3UFW0 Uncharacterized protein (Fragment) OS=Loxodonta africana GN=UBXN7 PE=4 SV=1
32 : H2MPI3_ORYLA 0.71 0.93 8 62 5 59 55 0 0 514 H2MPI3 Uncharacterized protein OS=Oryzias latipes GN=LOC101158307 PE=4 SV=1
33 : M4ANK4_XIPMA 0.71 0.89 8 62 5 59 55 0 0 526 M4ANK4 Uncharacterized protein OS=Xiphophorus maculatus PE=4 SV=1
34 : H2SJL4_TAKRU 0.69 0.91 8 62 5 59 55 0 0 534 H2SJL4 Uncharacterized protein OS=Takifugu rubripes GN=LOC101077376 PE=4 SV=1
35 : H2SJL5_TAKRU 0.69 0.91 8 62 5 59 55 0 0 496 H2SJL5 Uncharacterized protein OS=Takifugu rubripes GN=LOC101077376 PE=4 SV=1
36 : H2SJL6_TAKRU 0.69 0.91 8 62 5 59 55 0 0 474 H2SJL6 Uncharacterized protein OS=Takifugu rubripes GN=LOC101077376 PE=4 SV=1
37 : H3DCQ5_TETNG 0.69 0.91 8 62 5 59 55 0 0 444 H3DCQ5 Uncharacterized protein OS=Tetraodon nigroviridis PE=4 SV=1
38 : Q4RVE6_TETNG 0.69 0.91 8 62 6 60 55 0 0 472 Q4RVE6 Chromosome 15 SCAF14992, whole genome shotgun sequence. (Fragment) OS=Tetraodon nigroviridis GN=GSTENG00028370001 PE=4 SV=1
39 : U3J621_ANAPL 0.68 0.80 5 62 3 61 59 1 1 490 U3J621 Uncharacterized protein (Fragment) OS=Anas platyrhynchos GN=UBXN7 PE=4 SV=1
40 : W5MUC0_LEPOC 0.68 0.89 1 62 10 71 62 0 0 533 W5MUC0 Uncharacterized protein OS=Lepisosteus oculatus PE=4 SV=1
41 : G3PK47_GASAC 0.67 0.91 8 62 5 59 55 0 0 531 G3PK47 Uncharacterized protein OS=Gasterosteus aculeatus PE=4 SV=1
42 : V9KM74_CALMI 0.67 0.92 2 62 2 62 61 0 0 499 V9KM74 UBX domain-containing protein 7 OS=Callorhynchus milii PE=2 SV=1
43 : H3A8K4_LATCH 0.66 0.88 7 62 5 60 56 0 0 505 H3A8K4 Uncharacterized protein OS=Latimeria chalumnae PE=4 SV=1
44 : I3JU34_ORENI 0.65 0.89 1 62 10 71 62 0 0 540 I3JU34 Uncharacterized protein OS=Oreochromis niloticus GN=ubxn7 PE=4 SV=1
45 : Q6NTX4_XENLA 0.62 0.86 14 62 6 55 50 1 1 488 Q6NTX4 MGC81461 protein OS=Xenopus laevis GN=ubxn7 PE=2 SV=1
46 : V8NM57_OPHHA 0.62 0.75 15 62 24 66 48 1 5 472 V8NM57 UBX domain-containing protein 7 (Fragment) OS=Ophiophagus hannah GN=Ubxn7 PE=4 SV=1
47 : M7BKA3_CHEMY 0.59 0.76 10 62 346 397 54 2 3 857 M7BKA3 UBX domain-containing protein 7 OS=Chelonia mydas GN=UY3_14274 PE=4 SV=1
48 : L7M6A9_9ACAR 0.50 0.83 8 55 2 49 48 0 0 464 L7M6A9 Uncharacterized protein OS=Rhipicephalus pulchellus PE=2 SV=1
49 : K1R818_CRAGI 0.46 0.82 13 62 2 51 50 0 0 177 K1R818 UBX domain-containing protein 7 OS=Crassostrea gigas GN=CGI_10006504 PE=4 SV=1
50 : T1JSA8_TETUR 0.46 0.70 4 59 2 58 57 1 1 501 T1JSA8 Uncharacterized protein OS=Tetranychus urticae PE=4 SV=1
51 : V3ZTQ5_LOTGI 0.42 0.60 15 62 22 60 48 1 9 487 V3ZTQ5 Uncharacterized protein OS=Lottia gigantea GN=LOTGIDRAFT_132375 PE=4 SV=1
52 : C3ZEN2_BRAFL 0.41 0.83 4 62 1 59 59 0 0 500 C3ZEN2 Putative uncharacterized protein (Fragment) OS=Branchiostoma floridae GN=BRAFLDRAFT_209954 PE=4 SV=1
53 : D5G5L9_TUBMM 0.40 0.62 15 62 1 48 48 0 0 532 D5G5L9 Whole genome shotgun sequence assembly, scaffold_111, strain Mel28 OS=Tuber melanosporum (strain Mel28) GN=GSTUM_00001479001 PE=4 SV=1
54 : D7FS95_ECTSI 0.40 0.67 1 62 18 76 63 2 5 609 D7FS95 Putative uncharacterized protein OS=Ectocarpus siliculosus GN=Esi_0229_0023 PE=4 SV=1
55 : T1KRM8_TETUR 0.40 0.67 6 59 4 58 55 1 1 672 T1KRM8 Uncharacterized protein OS=Tetranychus urticae PE=4 SV=1
56 : C1LH31_SCHJA 0.39 0.65 15 62 1 49 49 1 1 393 C1LH31 UBX domain-containing protein OS=Schistosoma japonicum PE=2 SV=1
57 : T0Q6Q6_9STRA 0.39 0.67 14 62 5 49 49 1 4 437 T0Q6Q6 Uncharacterized protein OS=Saprolegnia diclina VS20 GN=SDRG_13017 PE=4 SV=1
58 : T1HM56_RHOPR 0.38 0.60 11 59 2 51 50 1 1 434 T1HM56 Uncharacterized protein OS=Rhodnius prolixus PE=4 SV=1
59 : W8BVU4_CERCA 0.37 0.75 13 62 2 52 51 1 1 492 W8BVU4 UBX domain-containing protein 7 OS=Ceratitis capitata GN=UBXN7 PE=2 SV=1
60 : E9FTF8_DAPPU 0.35 0.63 1 62 23 85 63 1 1 480 E9FTF8 Putative uncharacterized protein OS=Daphnia pulex GN=DAPPUDRAFT_190703 PE=4 SV=1
61 : T2MHW3_HYDVU 0.35 0.69 1 61 6 67 62 1 1 464 T2MHW3 UBX domain-containing protein 7 (Fragment) OS=Hydra vulgaris GN=UBXN7 PE=2 SV=1
62 : W7THF8_9STRA 0.35 0.70 2 58 67 123 57 0 0 159 W7THF8 DNA-binding SAP OS=Nannochloropsis gaditana GN=Naga_100984g2 PE=4 SV=1
## ALIGNMENTS 1 - 62
SeqNo PDBNo AA STRUCTURE BP1 BP2 ACC NOCC VAR ....:....1....:....2....:....3....:....4....:....5....:....6....:....7
1 1 A G 0 0 118 9 19 GG G G G G GS
2 2 A S + 0 0 138 11 74 KK K G A G G STP
3 3 A S - 0 0 105 13 85 MM MA A K A K K ETG
4 4 A G + 0 0 85 38 67 AAAAAAAAAAAAAAAAAAAAAAAAAAAA M V M S A G KNS
5 5 A S - 0 0 118 39 51 AAAAAAAAAAAAAAAAAAAAAAAAAHAH SA G A S T A SAS
6 6 A S - 0 0 107 40 88 HHHHHHHHHHHHHHHHHHHHHHHHHGAG HA D A S M GP ANA
7 7 A G + 0 0 73 41 52 GGGGGGGGGGGGGGGGGGGGGGGGGGGG GL GGL G A GG KKP
8 8 A G - 0 0 70 51 48 GGGGGGGGGGGGGGGGGGGGGGGGGSGSG GGGGGGGDGGAEG A S D GS SMT
9 9 A S + 0 0 118 51 73 SSSSSSSSSSSSSSSSSSSSSSSSSASAD DDDDDDDADDGAD S M P DT KAA
10 10 A A S S- 0 0 84 52 57 AAAAAAAAAAAAAAAAAAAAAAAAAAASA TTTTTTTVATSAT AS S S GS SAS
11 11 A A S S+ 0 0 71 53 68 AAAAAAAAAAAAAAAAAAAAAAAAAAAAS SSTTTTTASSASS AS M K NM S KSA
12 12 A S > + 0 0 67 55 62 SSSSSSSSSSSSSSSSSSSSSSSASSAAASSAAAAAAASTAGSA NA S L DS R SNT
13 13 A S H > S+ 0 0 92 57 77 SSSSSSSSSSSSSSSSSSSSSSSSSSSSPSSPPLLLLLRPPSAP CSTA R EF DSCIA
14 14 A A H > S+ 0 0 78 59 70 AAAAAAAAAAAAAAAAAAAAAAAAAAAAGKKGEGGGGGLGEARGG SSSE G KE AQTVTP
15 15 A L H > S+ 0 0 15 63 46 LLLLLLLLLLLLLLLLLLLLLLLLLLLLVLLVAVVVVVLLVLLVVLVNIELMMLEMLLLVVS
16 16 A K H X S+ 0 0 112 63 73 KKKKKKKKKKKKKKKKKKKKKKKKRKKKNLLNNNNNNNENNQKNSKEIRKNDDAKDTESTSS
17 17 A G H X S+ 0 0 36 63 61 GGGGGGGGGGGGGGGGGGGGGGGGGGGGGTTGGGGGGGgGGGGGqKGNEqSAEQqvNeerdA
18 18 A L H X S+ 0 0 51 58 40 LLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLvLLLLLl..LKa.LL.av.mlqlT
19 19 A I H X S+ 0 0 11 58 16 IIIIIIIIIIIIIIIIIIIIIIIIIILIIFFIIIIIIIQIIIVIL..III.II.IV.IVIVI
20 20 A Q H X S+ 0 0 103 59 62 QQQQQQQQQQQQQQQQQQQQQQQQQQQQQTTQQRRRRRSQQRQQR.KEEE.ES.EE.IEEQA
21 21 A Q H X S+ 0 0 110 59 34 QQQQQQQQQQQQQQQQQQQQQQQQQQQQQIIQQQQQQQQQQQQQE.KNQQ.QQ.QN.GRQQD
22 22 A F H X>S+ 0 0 0 61 11 FFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFF.QFFF.FFFFFFFVFYF
23 23 A T H <5S+ 0 0 19 62 67 TTTTTTTTTTTTTTTTTTTITTTTTTTTTSSTTTTTTTTTTTITTGNCCC.RTICCMSVCIC
24 24 A T H <5S+ 0 0 104 62 49 TTTTTTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGAAAAAAAVASN.ATANCAEEASS
25 25 A I H <5S+ 0 0 93 62 19 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIVIIIIIISLVIF.IIVFIIIVVIL
26 26 A T T <5S- 0 0 35 62 10 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTSSTTTTTTTTTTTTTTSQTTT.TTTTTTTTTTT
27 27 A G < + 0 0 59 63 6 GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGSnGGGGDGgGGGGGGGG
28 28 A A - 0 0 20 63 21 AAAAAAAAAAAAAAAAAAAAAATAAAAAAAAAAAAAAAAAAAAAAAaAAAATAsEAASASAA
29 29 A S > - 0 0 74 63 60 SSSSSSSSSSSSSSSSSSSSSSSSSSTSTSSTTTTTTTSTTSNTTSSDDTDTTSASDPSTDG
30 30 A E H > S+ 0 0 104 63 38 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEDEEEQEREVEEEAAAEKP
31 31 A S H > S+ 0 0 99 63 63 SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSNSSSSNENDDRDNIGEEDTE
32 32 A V H >> S+ 0 0 57 63 52 VVVVVVVVVVVVVVVVVVVVVVVVVVIVVVVVVVVVVVVVVVVVVAVVVRVVKVRETNEVIA
33 33 A G H 3X S+ 0 0 0 63 34 GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGAGGAGAGAAAAAASAAAA
34 34 A K H 3X S+ 0 0 91 63 40 KKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKQKKKKKKKKKGRENKKQRKRLV
35 35 A H H < S+ 0 0 29 63 43 MMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMIMMMMMMLTLMYWTFYFLLMI
37 37 A L H ><>S+ 0 0 0 63 2 LLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLILL
38 38 A E H 3<5S+ 0 0 108 63 19 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEDESELE
39 39 A A T <<5S+ 0 0 62 63 15 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAVAAAISAAAA
40 40 A C T < 5S- 0 0 3 63 42 CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCSNCFTACCLM
41 41 A N T 5S- 0 0 155 63 26 NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNSNNNNNNNNGDANDNNNRNG
42 42 A N S - 0 0 61 63 18 NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNDSNNHNDNND
44 44 A L H > S+ 0 0 19 63 15 LLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLILLLLVYVLVLLL
45 45 A E H > S+ 0 0 152 63 2 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEDEEEEEE
46 46 A M H > S+ 0 0 91 63 45 MMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMLLMMQNLEEMSRMQ
47 47 A A H X S+ 0 0 0 63 0 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
48 48 A V H X S+ 0 0 15 63 9 VVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVIIVIIIVVVVLVVVV
49 49 A T H X S+ 0 0 89 63 55 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTNDNGTQSNKNTADNS
50 50 A M H X S+ 0 0 79 63 20 MMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMLMMALTLMMY
51 51 A F H < S+ 0 0 59 63 37 FFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFYYFFFFHHHHHYFHYFFYHYY
52 52 A L H < S+ 0 0 87 63 19 LLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLVMVMLFMVFMYFMLL
53 53 A D H < S+ 0 0 143 63 10 DDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDEDDDDEEEEED
54 54 A G S < S+ 0 0 55 63 32 GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGSSGVGTSGSSGQGGS
55 55 A G - 0 0 51 63 34 GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGDGIGGGGIEGGGLLG
56 56 A G + 0 0 70 62 27 GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGAGGGGGG GDDAGADDGGGSCG
57 57 A S - 0 0 120 62 67 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIMIIIIIIIIIIIIII PTVGAGNSSFGEVI
58 58 A G - 0 0 49 62 46 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAPAA SGGADGSVGPANPG
59 59 A P S S- 0 0 135 61 51 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEDEE AEQSMGEHASPPE
60 60 A S S S+ 0 0 114 58 45 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE P QGEA SA DQP
61 61 A S 0 0 120 58 41 PPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPP P GGSG GS APS
62 62 A G 0 0 133 57 39 SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS P DAGG GG AS
## SEQUENCE PROFILE AND ENTROPY
SeqNo PDBNo V L I M F W Y G A P S T C H R K Q E N D NOCC NDEL NINS ENTROPY RELENT WEIGHT
1 1 A 0 0 0 0 0 0 0 89 0 0 11 0 0 0 0 0 0 0 0 0 9 0 0 0.349 11 0.80
2 2 A 0 0 0 0 0 0 0 27 9 9 18 9 0 0 0 27 0 0 0 0 11 0 0 1.673 55 0.25
3 3 A 0 0 0 23 0 0 0 8 23 0 8 8 0 0 0 23 0 8 0 0 13 0 0 1.804 60 0.15
4 4 A 3 0 0 5 0 0 0 5 76 0 5 0 0 0 0 3 0 0 3 0 38 0 0 0.958 31 0.32
5 5 A 0 0 0 0 0 0 0 3 77 0 13 3 0 5 0 0 0 0 0 0 39 0 0 0.805 26 0.49
6 6 A 0 0 0 3 0 0 0 8 13 3 5 0 0 65 0 0 0 0 3 3 40 0 0 1.253 41 0.11
7 7 A 0 5 0 0 0 0 0 85 2 2 0 0 0 0 0 5 0 0 0 0 41 0 0 0.611 20 0.48
8 8 A 0 0 0 2 0 0 0 76 4 0 10 2 0 0 0 0 0 2 0 4 51 0 0 0.918 30 0.51
9 9 A 0 0 0 2 0 0 0 2 12 2 55 2 0 0 0 2 0 0 0 24 51 0 0 1.307 43 0.26
10 10 A 2 0 0 0 0 0 0 2 63 0 15 17 0 0 0 0 0 0 0 0 52 0 0 1.032 34 0.42
11 11 A 0 0 0 4 0 0 0 0 62 0 19 9 0 0 0 4 0 0 2 0 53 0 0 1.155 38 0.32
12 12 A 0 2 0 0 0 0 0 2 25 0 60 4 0 0 2 0 0 0 4 2 55 0 0 1.187 39 0.37
13 13 A 0 9 2 0 2 0 0 0 5 11 60 2 4 0 4 0 0 2 0 2 57 0 0 1.503 50 0.23
14 14 A 2 2 0 0 0 0 0 19 53 2 5 3 0 0 2 5 2 7 0 0 59 0 0 1.597 53 0.30
15 15 A 21 65 2 5 0 0 0 0 2 0 2 0 0 0 0 0 0 3 2 0 63 0 0 1.123 37 0.54
16 16 A 0 3 2 0 0 0 0 0 2 0 6 3 0 0 3 51 2 5 19 5 63 0 0 1.651 55 0.27
17 17 A 2 0 0 0 0 0 0 70 3 0 2 3 0 0 2 2 6 6 3 2 63 5 9 1.258 41 0.39
18 18 A 3 86 0 2 0 0 0 0 3 0 0 2 0 0 0 2 2 0 0 0 58 0 0 0.640 21 0.60
19 19 A 7 3 84 0 3 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0 58 0 0 0.629 21 0.84
20 20 A 0 0 2 0 0 0 0 0 2 0 3 3 0 0 12 2 63 14 0 0 59 0 0 1.253 41 0.37
21 21 A 0 0 3 0 0 0 0 2 0 0 0 0 0 0 2 2 85 2 3 2 59 0 0 0.715 23 0.66
22 22 A 2 0 0 0 95 0 2 0 0 0 0 0 0 0 0 0 2 0 0 0 61 0 0 0.250 8 0.89
23 23 A 2 0 6 2 0 0 0 2 0 0 5 69 11 0 2 0 0 0 2 0 62 0 0 1.156 38 0.33
24 24 A 2 0 0 0 0 0 0 2 71 0 5 13 2 0 0 0 0 3 3 0 62 0 0 1.075 35 0.50
25 25 A 8 3 84 0 3 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0 62 0 0 0.639 21 0.80
26 26 A 0 0 0 0 0 0 0 0 0 0 5 94 0 0 0 0 2 0 0 0 62 0 0 0.275 9 0.90
27 27 A 0 0 0 0 0 0 0 95 0 0 2 0 0 0 0 0 0 0 2 2 63 0 2 0.244 8 0.93
28 28 A 0 0 0 0 0 0 0 0 90 0 5 3 0 0 0 0 0 2 0 0 63 0 0 0.411 13 0.78
29 29 A 0 0 0 0 0 0 0 2 2 2 59 27 0 0 0 0 0 0 2 8 63 0 0 1.130 37 0.40
30 30 A 2 0 0 0 0 0 0 0 5 2 0 0 0 0 2 2 2 86 0 2 63 0 0 0.672 22 0.61
31 31 A 0 0 2 0 0 0 0 2 0 0 75 2 0 0 2 0 0 6 6 6 63 0 0 1.007 33 0.36
32 32 A 83 0 3 0 0 0 0 0 3 0 0 2 0 0 3 2 0 3 2 0 63 0 0 0.794 26 0.48
33 33 A 0 0 0 0 0 0 0 78 21 0 2 0 0 0 0 0 0 0 0 0 63 0 0 0.587 19 0.66
34 34 A 2 2 0 0 0 0 0 2 0 0 0 0 0 0 5 84 3 2 2 0 63 0 0 0.729 24 0.60
35 35 A 3 0 0 0 2 0 0 0 0 0 0 3 0 84 2 0 3 0 3 0 63 0 0 0.715 23 0.54
36 36 A 0 6 3 79 3 2 3 0 0 0 0 3 0 0 0 0 0 0 0 0 63 0 0 0.862 28 0.57
37 37 A 0 98 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 63 0 0 0.082 2 0.97
38 38 A 0 2 0 0 0 0 0 0 0 0 2 0 0 0 0 2 0 94 0 2 63 0 0 0.324 10 0.81
39 39 A 2 0 2 0 0 0 0 0 95 0 2 0 0 0 0 0 0 0 0 0 63 0 0 0.244 8 0.84
40 40 A 0 2 0 2 2 0 0 0 2 0 2 2 89 0 0 0 0 0 2 0 63 0 0 0.565 18 0.58
41 41 A 0 0 0 0 0 0 0 3 2 0 2 0 0 0 2 0 0 0 89 3 63 0 0 0.521 17 0.73
42 42 A 0 0 0 0 0 6 3 13 0 0 2 0 0 2 0 0 0 0 75 0 63 0 0 0.897 29 0.32
43 43 A 0 0 0 0 0 0 0 0 0 0 2 0 0 2 0 0 0 0 92 5 63 0 0 0.353 11 0.82
44 44 A 5 92 2 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 63 0 0 0.353 11 0.84
45 45 A 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 98 0 2 63 0 0 0.082 2 0.98
46 46 A 0 5 0 84 0 0 0 0 0 0 2 0 0 0 2 0 3 3 2 0 63 0 0 0.707 23 0.55
47 47 A 0 0 0 0 0 0 0 0 100 0 0 0 0 0 0 0 0 0 0 0 63 0 0 0.000 0 1.00
48 48 A 90 2 8 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 63 0 0 0.357 11 0.91
49 49 A 0 0 0 0 0 0 0 2 2 0 3 79 0 0 0 2 2 0 8 3 63 0 0 0.867 28 0.44
50 50 A 0 5 0 90 0 0 2 0 2 0 0 2 0 0 0 0 0 0 0 0 63 0 0 0.433 14 0.79
51 51 A 0 0 0 0 78 0 11 0 0 0 0 0 0 11 0 0 0 0 0 0 63 0 0 0.684 22 0.63
52 52 A 5 81 0 8 5 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 63 0 0 0.728 24 0.80
53 53 A 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 10 0 90 63 0 0 0.314 10 0.89
54 54 A 2 0 0 0 0 0 0 86 0 0 10 2 0 0 0 0 2 0 0 0 63 0 0 0.553 18 0.68
55 55 A 0 3 3 0 0 0 0 90 0 0 0 0 0 0 0 0 0 2 0 2 63 0 0 0.441 14 0.66
56 56 A 0 0 0 0 0 0 0 85 5 0 2 0 2 0 0 0 0 0 0 6 62 0 0 0.591 19 0.73
57 57 A 3 0 76 2 2 0 0 5 2 2 5 2 0 0 0 0 0 2 2 0 62 0 0 1.080 36 0.33
58 58 A 2 0 0 0 0 0 0 10 77 5 3 0 0 0 0 0 0 0 2 2 62 0 0 0.881 29 0.54
59 59 A 0 0 0 2 0 0 0 2 3 5 3 0 0 2 0 0 2 80 0 2 61 0 0 0.885 29 0.49
60 60 A 0 0 0 0 0 0 0 2 3 3 3 0 0 0 0 0 3 83 0 2 58 0 0 0.761 25 0.55
61 61 A 0 0 0 0 0 0 0 7 2 84 7 0 0 0 0 0 0 0 0 0 58 0 0 0.581 19 0.58
62 62 A 0 0 0 0 0 0 0 9 4 2 84 0 0 0 0 0 0 0 0 2 57 0 0 0.618 20 0.61
## INSERTION LIST
AliNo IPOS JPOS Len Sequence
39 14 16 1 gWv
45 5 10 1 qQl
47 17 362 1 nSa
50 15 16 1 qAa
54 24 41 1 gVs
55 13 16 1 qAa
56 4 4 1 vSv
58 8 9 1 eEm
59 6 7 1 eEl
60 18 40 1 rQq
61 18 23 1 dDl
//