Complet list of 2cps hssp file
Complete list of 2cps.hssp file
HSSP HOMOLOGY DERIVED SECONDARY STRUCTURE OF PROTEINS , VERSION 2.0 2011
PDBID 2CPS
THRESHOLD according to: t(L)=(290.15 * L ** -0.562) + 5
REFERENCE Sander C., Schneider R. : Database of homology-derived protein structures. Proteins, 9:56-68 (1991).
CONTACT Maintained at http://www.cmbi.ru.nl/ by Maarten L. Hekkelman
DATE file generated on 2014-05-17
HEADER VIRAL PROTEIN 16-APR-98 2CPS
COMPND MOL_ID: 1; MOLECULE: M13 MAJOR COAT PROTEIN; CHAIN: A; SYNONYM: M13 GE
SOURCE MOL_ID: 1; ORGANISM_SCIENTIFIC: ENTEROBACTERIA PHAGE M13; ORGANISM_TAX
AUTHOR C.H.M.PAPAVOINE,B.E.C.CHRISTIAANS,R.H.A.FOLMER, R.N.H.KONINGS,C.W.HILB
DBREF 2CPS A 1 50 UNP P69541 COATB_BPM13 24 73
SEQLENGTH 50
NCHAIN 1 chain(s) in 2CPS data set
NALIGN 63
NOTATION : ID: EMBL/SWISSPROT identifier of the aligned (homologous) protein
NOTATION : STRID: if the 3-D structure of the aligned protein is known, then STRID is the Protein Data Bank identifier as taken
NOTATION : from the database reference or DR-line of the EMBL/SWISSPROT entry
NOTATION : %IDE: percentage of residue identity of the alignment
NOTATION : %SIM (%WSIM): (weighted) similarity of the alignment
NOTATION : IFIR/ILAS: first and last residue of the alignment in the test sequence
NOTATION : JFIR/JLAS: first and last residue of the alignment in the alignend protein
NOTATION : LALI: length of the alignment excluding insertions and deletions
NOTATION : NGAP: number of insertions and deletions in the alignment
NOTATION : LGAP: total length of all insertions and deletions
NOTATION : LSEQ2: length of the entire sequence of the aligned protein
NOTATION : ACCNUM: SwissProt accession number
NOTATION : PROTEIN: one-line description of aligned protein
NOTATION : SeqNo,PDBNo,AA,STRUCTURE,BP1,BP2,ACC: sequential and PDB residue numbers, amino acid (lower case = Cys), secondary
NOTATION : structure, bridge partners, solvent exposure as in DSSP (Kabsch and Sander, Biopolymers 22, 2577-2637(1983)
NOTATION : VAR: sequence variability on a scale of 0-100 as derived from the NALIGN alignments
NOTATION : pair of lower case characters (AvaK) in the alignend sequence bracket a point of insertion in this sequence
NOTATION : dots (....) in the alignend sequence indicate points of deletion in this sequence
NOTATION : SEQUENCE PROFILE: relative frequency of an amino acid type at each position. Asx and Glx are in their
NOTATION : acid/amide form in proportion to their database frequencies
NOTATION : NOCC: number of aligned sequences spanning this position (including the test sequence)
NOTATION : NDEL: number of sequences with a deletion in the test protein at this position
NOTATION : NINS: number of sequences with an insertion in the test protein at this position
NOTATION : ENTROPY: entropy measure of sequence variability at this position
NOTATION : RELENT: relative entropy, i.e. entropy normalized to the range 0-100
NOTATION : WEIGHT: conservation weight
## PROTEINS : identifier and alignment statistics
NR. ID STRID %IDE %WSIM IFIR ILAS JFIR JLAS LALI NGAP LGAP LSEQ2 ACCNUM PROTEIN
1 : CAPSD_BPM13 2CPB 1.00 1.00 1 50 24 73 50 0 0 73 P69541 Capsid protein G8P OS=Enterobacteria phage M13 GN=VIII PE=1 SV=1
2 : J7I0P6_BPM13 1.00 1.00 1 50 24 73 50 0 0 73 J7I0P6 Major coat protein OS=Enterobacteria phage M13 GN=VIII PE=4 SV=1
3 : CAPSD_BPF1 0.98 1.00 1 50 24 73 50 0 0 73 P69540 Capsid protein G8P OS=Enterobacteria phage f1 GN=VIII PE=1 SV=1
4 : CAPSD_BPFD 1MZT 0.98 1.00 1 50 24 73 50 0 0 73 P69539 Capsid protein G8P OS=Enterobacteria phage fd GN=VIII PE=1 SV=1
5 : D0U160_BPF1 0.98 1.00 1 50 24 73 50 0 0 73 D0U160 VIII OS=Enterobacteria phage f1 GN=VIII PE=4 SV=1
6 : Q38211_BPF1 0.98 1.00 1 42 24 65 42 0 0 65 Q38211 Bacteriophage F1 and amber mutant M13-8H1, gene VIII, 5' end. (Precursor) OS=Enterobacteria phage f1 PE=4 SV=1
7 : Q9T0Q9_BPFD 1NH4 0.98 1.00 1 50 1 50 50 0 0 50 Q9T0Q9 Gene-8 protein, G8P=MAJOR coat protein OS=Enterobacteria phage fd PE=1 SV=1
8 : A7BJW7_BPF1 0.96 0.98 1 50 24 73 50 0 0 73 A7BJW7 Protein VIII OS=Enterobacteria phage f1 GN=VIII PE=4 SV=1
9 : A7BJX7_BPF1 0.96 0.98 1 50 24 73 50 0 0 73 A7BJX7 Protein VIII OS=Enterobacteria phage f1 GN=VIII PE=4 SV=1
10 : CAPSD_BPZJ2 0.96 1.00 1 50 1 50 50 0 0 50 P03618 Capsid protein G8P OS=Enterobacteria phage ZJ/2 GN=VIII PE=1 SV=1
11 : D0U170_BPF1 0.96 1.00 1 50 24 73 50 0 0 73 D0U170 VIII OS=Enterobacteria phage f1 GN=VIII PE=4 SV=1
12 : CAPSD_BPIF1 1IFK 0.67 0.84 2 50 26 74 49 0 0 74 P03619 Capsid protein G8P OS=Enterobacteria phage If1 GN=VIII PE=1 SV=2
13 : R8UTJ9_9ENTR 0.67 0.84 2 50 26 74 49 0 0 74 R8UTJ9 Capsid protein G8P OS=Citrobacter sp. KTE32 GN=WEU_04652 PE=4 SV=1
14 : D2U3R5_9ENTR 0.52 0.75 10 49 18 57 40 0 0 58 D2U3R5 Putative uncharacterized protein OS=Arsenophonus nasoniae GN=ARN_33020 PE=4 SV=1
15 : Q1Z2M5_PHOPR 0.52 0.74 4 49 31 76 46 0 0 77 Q1Z2M5 Uncharacterized protein OS=Photobacterium profundum 3TCK GN=P3TCK_08566 PE=4 SV=1
16 : Q1Z9G9_PHOPR 0.52 0.74 4 49 31 76 46 0 0 77 Q1Z9G9 Uncharacterized protein OS=Photobacterium profundum 3TCK GN=P3TCK_19935 PE=4 SV=1
17 : B3HXZ5_ECOLX 0.45 0.71 1 49 31 79 49 0 0 80 B3HXZ5 Coat protein B OS=Escherichia coli F11 GN=EcF11_4854 PE=4 SV=1
18 : D8BBY2_ECOLX 0.45 0.71 1 49 31 79 49 0 0 80 D8BBY2 Phage major coat protein, Gp8 OS=Escherichia coli MS 200-1 GN=HMPREF9553_00470 PE=4 SV=1
19 : E1S287_ECOUM 0.45 0.71 1 49 31 79 49 0 0 80 E1S287 Uncharacterized protein OS=Escherichia coli (strain UM146) GN=UM146_09465 PE=4 SV=1
20 : E9TNQ4_ECOLX 0.45 0.71 1 49 31 79 49 0 0 80 E9TNQ4 Phage major coat protein, Gp8 OS=Escherichia coli MS 60-1 GN=HMPREF9533_00002 PE=4 SV=1
21 : F0KSK7_YERE3 0.45 0.71 1 49 31 79 49 0 0 80 F0KSK7 Coat protein B OS=Yersinia enterocolitica subsp. palearctica serotype O:9 / biotype 3 (strain 105.5R(r)) GN=YE105_C2156 PE=4 SV=1
22 : F4N6M3_YEREN 0.45 0.71 1 49 31 79 49 0 0 80 F4N6M3 Capsid protein G8P OS=Yersinia enterocolitica W22703 GN=VIII PE=4 SV=1
23 : G9UD57_SALMO 0.45 0.71 1 49 31 79 49 0 0 80 G9UD57 Uncharacterized protein OS=Salmonella enterica subsp. enterica serovar Montevideo str. SARB30 GN=SEEM030_18899 PE=4 SV=1
24 : I4T142_ECOLX 0.45 0.71 1 49 31 79 49 0 0 80 I4T142 Uncharacterized protein OS=Escherichia coli 541-15 GN=EC54115_07707 PE=4 SV=1
25 : L3DQ15_ECOLX 0.45 0.71 1 49 31 79 49 0 0 80 L3DQ15 Uncharacterized protein OS=Escherichia coli KTE206 GN=A15M_01727 PE=4 SV=1
26 : L4KXB1_ECOLX 0.45 0.71 1 49 31 79 49 0 0 80 L4KXB1 Uncharacterized protein OS=Escherichia coli KTE192 GN=A13U_01911 PE=4 SV=1
27 : L4QUF1_ECOLX 0.45 0.71 1 49 31 79 49 0 0 80 L4QUF1 Uncharacterized protein OS=Escherichia coli KTE215 GN=A175_04714 PE=4 SV=1
28 : L4UFI9_ECOLX 0.45 0.71 1 49 31 79 49 0 0 80 L4UFI9 Uncharacterized protein OS=Escherichia coli KTE109 GN=WIA_04448 PE=4 SV=1
29 : L4YAV4_ECOLX 0.45 0.71 1 49 31 79 49 0 0 80 L4YAV4 Uncharacterized protein OS=Escherichia coli KTE131 GN=WIU_04681 PE=4 SV=1
30 : L4ZX73_ECOLX 0.45 0.71 1 49 31 79 49 0 0 80 L4ZX73 Uncharacterized protein OS=Escherichia coli KTE145 GN=WK5_04654 PE=4 SV=1
31 : L6YUM1_SALEN 0.45 0.71 1 49 31 79 49 0 0 80 L6YUM1 Coat protein B OS=Salmonella enterica subsp. enterica serovar Enteritidis str. 81-2625 GN=SEEE2625_18953 PE=4 SV=1
32 : M8SUX6_ECOLX 0.45 0.71 1 49 31 79 49 0 0 80 M8SUX6 Capsid protein G8P OS=Escherichia coli 2872000 GN=EC2872000_1771 PE=4 SV=1
33 : M8T8W9_ECOLX 0.45 0.71 1 49 31 79 49 0 0 80 M8T8W9 Capsid protein G8P OS=Escherichia coli 2871950 GN=EC2871950_1646 PE=4 SV=1
34 : N1AP57_SALET 0.45 0.71 1 49 31 79 49 0 0 80 N1AP57 Coat protein B OS=Salmonella enterica subsp. enterica serovar Agona str. 15.H.03 GN=SA15_4636 PE=4 SV=1
35 : N2E758_ECOLX 0.45 0.71 1 49 31 79 49 0 0 80 N2E758 Capsid protein G8P OS=Escherichia coli 2846750 GN=EC2846750_1459 PE=4 SV=1
36 : Q9T0Q8_BPIKE 0.45 0.70 7 50 10 53 44 0 0 53 Q9T0Q8 Gene-8 protein, G8P=MAJOR coat protein OS=Enterobacteria phage IKe PE=1 SV=1
37 : S1V122_KLEPN 0.45 0.71 1 49 31 79 49 0 0 80 S1V122 Phage major coat protein, Gp8 OS=Klebsiella pneumoniae UHKPC81 GN=H232_0512 PE=4 SV=1
38 : T6DZG4_ECOLX 0.45 0.71 1 49 31 79 49 0 0 80 T6DZG4 Uncharacterized protein OS=Escherichia coli HVH 56 (4-2153033) GN=G728_01402 PE=4 SV=1
39 : T6NXN3_ECOLX 0.45 0.71 1 49 31 79 49 0 0 80 T6NXN3 Uncharacterized protein OS=Escherichia coli HVH 100 (4-2850729) GN=G761_04629 PE=4 SV=1
40 : T6SUQ3_ECOLX 0.45 0.71 1 49 31 79 49 0 0 80 T6SUQ3 Uncharacterized protein OS=Escherichia coli HVH 112 (4-5987253) GN=G773_04746 PE=4 SV=1
41 : T7P632_ECOLX 0.45 0.71 1 49 31 79 49 0 0 80 T7P632 Uncharacterized protein OS=Escherichia coli HVH 185 (4-2876639) GN=G837_01484 PE=4 SV=1
42 : T8EDV1_ECOLX 0.45 0.71 1 49 31 79 49 0 0 80 T8EDV1 Uncharacterized protein OS=Escherichia coli KOEGE 30 (63a) GN=G881_01479 PE=4 SV=1
43 : T8HSY1_ECOLX 0.45 0.71 1 49 31 79 49 0 0 80 T8HSY1 Uncharacterized protein OS=Escherichia coli KOEGE 70 (185a) GN=G892_01406 PE=4 SV=1
44 : T8QJF9_ECOLX 0.45 0.71 1 49 31 79 49 0 0 80 T8QJF9 Uncharacterized protein OS=Escherichia coli UMEA 3113-1 GN=G909_01488 PE=4 SV=1
45 : T9KX77_ECOLX 0.45 0.71 1 49 31 79 49 0 0 80 T9KX77 Uncharacterized protein OS=Escherichia coli UMEA 3490-1 GN=G976_04870 PE=4 SV=1
46 : T9LSI9_ECOLX 0.45 0.71 1 49 31 79 49 0 0 80 T9LSI9 Uncharacterized protein OS=Escherichia coli UMEA 3617-1 GN=G980_01531 PE=4 SV=1
47 : U4ZPR2_9VIBR 0.45 0.84 13 50 41 78 38 0 0 78 U4ZPR2 Uncharacterized protein OS=Vibrio cyclitrophicus FF75 GN=M565_ctg5P0626 PE=4 SV=1
48 : V0UUN9_ECOLX 0.45 0.71 1 49 31 79 49 0 0 80 V0UUN9 Phage major coat protein, Gp8 OS=Escherichia coli 907710 GN=HMPREF1598_00807 PE=4 SV=1
49 : V1D241_ECOLX 0.45 0.71 1 49 31 79 49 0 0 80 V1D241 Phage major coat protein, Gp8 OS=Escherichia coli A35218R GN=HMPREF1622_00923 PE=4 SV=1
50 : V2RIA3_ECOLX 0.45 0.71 1 49 31 79 49 0 0 80 V2RIA3 Uncharacterized protein OS=Escherichia coli UMEA 3290-1 GN=G959_04714 PE=4 SV=1
51 : V2S0W4_ECOLX 0.45 0.71 1 49 31 79 49 0 0 80 V2S0W4 Uncharacterized protein OS=Escherichia coli UMEA 3426-1 GN=G974_01712 PE=4 SV=1
52 : V7QD36_SALET 0.45 0.71 1 49 31 79 49 0 0 80 V7QD36 Capsid protein OS=Salmonella enterica subsp. enterica serovar Cerro str. CFSAN001691 GN=CFSAN001691_22650 PE=4 SV=1
53 : V7R433_SALET 0.45 0.71 1 49 31 79 49 0 0 80 V7R433 Capsid protein OS=Salmonella enterica subsp. enterica serovar Cerro str. CFSAN001690 GN=CFSAN001690_22615 PE=4 SV=1
54 : V7SBK1_SALET 0.45 0.71 1 49 31 79 49 0 0 80 V7SBK1 Capsid protein OS=Salmonella enterica subsp. enterica serovar Cerro str. CFSAN001692 GN=CFSAN001692_22620 PE=4 SV=1
55 : V7T744_SALET 0.45 0.71 1 49 31 79 49 0 0 80 V7T744 Capsid protein OS=Salmonella enterica subsp. enterica serovar Cerro str. CFSAN001697 GN=CFSAN001697_22635 PE=4 SV=1
56 : V7VU65_SALET 0.45 0.71 1 49 31 79 49 0 0 80 V7VU65 Capsid protein OS=Salmonella enterica subsp. enterica serovar Cerro str. CFSAN001587 GN=CFSAN001587_22880 PE=4 SV=1
57 : V7YKX0_SALET 0.45 0.71 1 49 31 79 49 0 0 80 V7YKX0 Capsid protein OS=Salmonella enterica subsp. enterica serovar Cerro str. 5569 GN=SEEC5569_17025 PE=4 SV=1
58 : F9S7V9_9VIBR 0.44 0.76 10 50 33 73 41 0 0 73 F9S7V9 Uncharacterized protein OS=Vibrio ichthyoenteri ATCC 700023 GN=VII00023_20732 PE=4 SV=1
59 : W9ADL5_PHOPO 0.44 0.60 1 50 31 80 50 0 0 81 W9ADL5 Capsid protein G8P OS=Photobacterium phosphoreum ANT220 GN=VIII PE=4 SV=1
60 : A4G5A4_HERAR 0.43 0.66 3 49 28 74 47 0 0 75 A4G5A4 Uncharacterized protein OS=Herminiimonas arsenicoxydans GN=HEAR1524 PE=4 SV=1
61 : CAPSD_BPI22 0.41 0.69 1 49 35 83 49 0 0 84 P15416 Capsid protein G8P OS=Enterobacteria phage I2-2 GN=VIII PE=3 SV=1
62 : K8W5V2_9ENTR 0.41 0.77 5 48 34 77 44 0 0 78 K8W5V2 Uncharacterized protein OS=Providencia sneebia DSM 19967 GN=OO7_16330 PE=4 SV=1
63 : CAPSD_BPIKE 1IFL 0.40 0.69 2 49 34 81 48 0 0 82 P03620 Capsid protein G8P OS=Enterobacteria phage IKe GN=VIII PE=1 SV=1
## ALIGNMENTS 1 - 63
SeqNo PDBNo AA STRUCTURE BP1 BP2 ACC NOCC VAR ....:....1....:....2....:....3....:....4....:....5....:....6....:....7
1 1 A A 0 0 149 53 69 AAAAAAAAAAA TTTTTTTTTTTTTTTTTTT TTTTTTTTTT TTTTTTTTTT A S
2 2 A E + 0 0 204 56 61 EEEEEEEEEEEDD GGGGGGGGGGGGGGGGGGG GGGGGGGGGG GGGGGGGGGG D T A
3 3 A G + 0 0 65 57 21 GGGGGGGGGGGAA GGGGGGGGGSGSGGGGGGG GGGGGGGGGG GGGGGGGGGG PGA A
4 4 A D - 0 0 148 59 67 DDDDDDDDDDDTT GGTTTTTTTTTTTTTTTTTTT TTTTTTTTTT TTTTTTTTTT ADT T
5 5 A D > - 0 0 83 60 34 DDDDDDDDDDDSS TTDDDDDDDDDDDDDDDDDDD DDDDDDDDDD DDDDDDDDDD TDSQN
6 6 A P T 5S+ 0 0 118 60 131 PPPPPPPPPPPQQ GGYYYYYYYYYYYYYYYYYYY YYYYYYYYYY YYYYYYYYYY GPYPY
7 7 A A T >5S- 0 0 66 61 3 AAAAAAAAAAAAA AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA AAAAAAAAAA AGAAA
8 8 A K H >5S+ 0 0 136 61 89 KKKKKKKKKKKKK AAGGGGGGGGGGGGGGGGGGGTGGGGGGGGGG GGGGGGGGGG DVTQT
9 9 A A H >5S+ 0 0 31 61 73 AAAAAAAAAAAAA AAQQQQQQQQQQQQQQQQQQQEQQQQQQQQQQ QQQQQQQQQQ ADEDE
10 10 A A H >X S+ 0 0 150 63 55 FFFFFFFFFFFFFMFFMMMMMMMMMMMMMMMMMMMMMMMMMMMMMM MMMMMMMMMMFFIMIM
12 12 A N H 3X S+ 0 0 108 63 36 NNDDDDDDDDDDDDTTDDDDDDDDDDDDDDDDDDDDDDDDDDDDDD DDDDDDDDDDTANNTD
13 13 A S H 3< S+ 0 0 72 64 52 SSSSSSSSSSSSSSAAAAAAAAAAASASAAAAAAASAAAAAAAAAAAAAAAAAAAAAAQASSS
14 14 A L H X< S+ 0 0 119 64 13 LLLLLLLLLLLLLLVVLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLMLLLLLLLLLLVVLLIL
15 15 A Q H 3< S+ 0 0 154 64 106 QQQQQQQQQQQTTLGGLLLLLLLLLLLLLLLLLLLKLLLLLLLLLLTLLLLLLLLLLSASKGK
16 16 A A T 3< S+ 0 0 79 64 55 AAAAAAAAAATAATAATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAGTET
17 17 A S < + 0 0 101 64 80 SSSSSSSSSSSQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQAQQQQQQQQQQFLKQTQ
18 18 A A >> + 0 0 37 64 14 AAAAAAAAAAAAAAVVAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAVAAAA
19 19 A T T 34 S+ 0 0 124 64 72 TTTTTTTTNTTTTNTTNNNNNNNNNNNNNNNNNNNINNNNNNNNNNTNNNNNNNNNNTTTTTI
20 20 A E T 34 S+ 0 0 122 64 38 EEEEEEEEEEEEETEEDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDKLDGD
21 21 A Y T <> S+ 0 0 183 64 57 YYYYYYYYYYYMMLYYLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLYLLLLLLLLLLVFYLML
22 22 A I T < S+ 0 0 129 64 29 IIIIIIIIIIISSIEEIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIEIIII
23 23 A G T > S+ 0 0 40 64 26 GGGGGGGGGGGGGGGGGGGGGGGGGAGAGGGGGGGSGGGGGGGGGGAGGGGGGGGGGATTDDS
24 24 A Y H > S+ 0 0 156 64 116 YYYYYYYYYYYYYKYYKKKKKKKKKKKKKKKKKKKQKKKKKKKKKKMKKKKKKKKKKAAAQLQ
25 25 A A H X S+ 0 0 56 64 78 AAAAAAAAAAAAAVTTVVVVVVVVVVVVVVVVVVVTVVVVVVVVVVAVVVVVVVVVVAASTAT
26 26 A W H > S+ 0 0 185 64 0 WWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWFWWW
27 27 A A H X S+ 0 0 61 64 45 AAAAAAAAAAAAAPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPTPPPPPPPPPPPPAPPP
28 28 A M H X S+ 0 0 125 64 38 MMMMMMMMMMMLLVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVIVVVVVVVVVVIIVVVV
29 29 A V H >X S+ 0 0 73 64 9 VVVVVVVVVVVVVVIIVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVAVIV
30 30 A V H 3X>S+ 0 0 87 64 31 VVVVVVVVVVVVVVLLVVVVVVVVVVVVVVVVVVVTVVVVVVVVVVPVVVVVVVVVVTIVTAT
31 31 A V H 3<5S+ 0 0 93 64 79 VVVVVVVVVVVLLAAAAAAAAAAAAAAAAAAAAAATAAAAAAAAAAIAAAAAAAAAALSLSLT
32 32 A I H <<5S+ 0 0 117 64 17 IIIIIIIIIIIVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVLIVVVV
33 33 A V H >X5S+ 0 0 85 64 28 VVVVVVVVVVVVVVTTVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVTTAAVV
34 34 A G H 3X5S+ 0 0 36 64 24 GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGVGGGGGGGGGGVGGGGGGGGGGVVGVGV
35 35 A A H 3> S+ 0 0 69 64 85 TTTTTTTTTTTTTGFFGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGFGGGGGGGGGGFVFGFG
37 37 A I H X S+ 0 0 94 64 43 IIIIIIITIIIVVLIILLLLLLLLLLLLLLLLLLLLLLLLLLLLLLVLLLLLLLLLLIIWLLL
38 38 A G H X S+ 0 0 46 64 46 GGGGGGGGGGGGGAGGAAAAAAAAAAAAAAAAAAAVAAAAAAAAAAGAAAAAAAAAAGGGAAV
39 39 A I H X S+ 0 0 104 64 3 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIMIIIII
40 40 A K H X S+ 0 0 121 64 46 KKKKKKKKKKKKKRKKRRRRRRRRRRRRRRRRRRRKRRRRRRRRRRKRRRRRRRRRRKSARKR
41 41 A L H X S+ 0 0 96 64 36 LLLLLLLLLLLLLLLLIIIIIIIIILILIIIIIIILIIIIIIIIIILIIIIIIIIIILLMLLL
42 42 A F H X S+ 0 0 138 64 4 FFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFMFFF
43 43 A K H X S+ 0 0 99 63 0 KKKKK KKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKK
44 44 A K H < S+ 0 0 90 63 0 KKKKK KKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKK
45 45 A F H < S+ 0 0 150 63 29 FFFFF FFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFAFFFFFFFFFFAFAFVF
46 46 A T H < S+ 0 0 77 63 73 TTTTT TTTATVVSVVSSSSSSSSSSASSASSSSSVSSSSSSSSSSASSSSSSSSSSASFSSS
47 47 A S S < S+ 0 0 83 63 27 SSSSS SSSSSSSSNNSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSNSSSSSSSSSSNKSSNS
48 48 A K + 0 0 131 63 9 KKKKK KKKKKRRKKKKKKKKKKKKKKKKKKKKKKRKKKKKKKKKKKKKKKKKKKKKKKRKKK
49 49 A A 0 0 95 62 0 AAAAA AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA A
50 50 A S 0 0 180 17 32 SSSSS SSSSSSS S T SA
## SEQUENCE PROFILE AND ENTROPY
SeqNo PDBNo V L I M F W Y G A P S T C H R K Q E N D NOCC NDEL NINS ENTROPY RELENT WEIGHT
1 1 A 0 0 0 0 0 0 0 0 25 0 2 74 0 0 0 0 0 0 0 0 53 0 0 0.645 21 0.30
2 2 A 0 0 0 0 0 0 0 70 2 0 0 2 0 0 0 0 0 21 0 5 56 0 0 0.883 29 0.38
3 3 A 0 0 0 0 0 0 0 88 7 2 4 0 0 0 0 0 0 0 0 0 57 0 0 0.490 16 0.78
4 4 A 0 0 0 0 0 0 0 3 2 0 0 73 0 0 0 0 0 0 0 22 59 0 0 0.748 24 0.32
5 5 A 0 0 0 0 0 0 0 0 0 0 5 5 0 0 0 0 2 0 2 87 60 0 0 0.560 18 0.65
6 6 A 0 0 0 0 0 0 68 5 0 23 0 0 0 0 0 0 3 0 0 0 60 0 0 0.863 28 -0.31
7 7 A 0 0 0 0 0 0 0 2 98 0 0 0 0 0 0 0 0 0 0 0 61 0 0 0.084 2 0.96
8 8 A 2 0 0 0 0 0 0 64 3 0 0 5 0 0 0 23 2 0 0 2 61 0 0 1.086 36 0.10
9 9 A 0 0 0 0 0 0 0 0 28 0 0 0 0 0 0 0 64 5 0 3 61 0 0 0.902 30 0.26
10 10 A 0 0 0 0 0 0 0 0 100 0 0 0 0 0 0 0 0 0 0 0 63 0 0 0.000 0 1.00
11 11 A 0 0 3 68 29 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 63 0 0 0.728 24 0.45
12 12 A 0 0 0 0 0 0 0 0 2 0 0 6 0 0 0 0 0 0 8 84 63 0 0 0.587 19 0.64
13 13 A 0 0 0 0 0 0 0 0 66 0 33 0 0 0 0 0 2 0 0 0 64 0 0 0.707 23 0.47
14 14 A 6 91 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 64 0 0 0.392 13 0.86
15 15 A 0 63 0 0 0 0 0 5 2 0 3 5 0 0 0 5 19 0 0 0 64 0 0 1.211 40 -0.06
16 16 A 0 0 0 0 0 0 0 2 25 0 0 72 0 0 0 0 0 2 0 0 64 0 0 0.714 23 0.45
17 17 A 0 2 0 0 2 0 0 0 2 0 19 2 0 0 0 2 73 0 0 0 64 0 0 0.866 28 0.20
18 18 A 5 0 0 0 0 0 0 0 95 0 0 0 0 0 0 0 0 0 0 0 64 0 0 0.189 6 0.85
19 19 A 0 0 3 0 0 0 0 0 0 0 0 33 0 0 0 0 0 0 64 0 64 0 0 0.759 25 0.27
20 20 A 0 2 0 0 0 0 0 2 0 0 0 2 0 0 0 2 0 25 0 69 64 0 0 0.864 28 0.62
21 21 A 2 67 0 5 2 0 25 0 0 0 0 0 0 0 0 0 0 0 0 0 64 0 0 0.887 29 0.42
22 22 A 0 0 92 0 0 0 0 0 0 0 3 0 0 0 0 0 0 5 0 0 64 0 0 0.327 10 0.71
23 23 A 0 0 0 0 0 0 0 84 6 0 3 3 0 0 0 0 0 0 0 3 64 0 0 0.642 21 0.73
24 24 A 0 2 0 2 0 0 25 0 5 0 0 0 0 0 0 63 5 0 0 0 64 0 0 1.057 35 -0.17
25 25 A 63 0 0 0 0 0 0 0 28 0 2 8 0 0 0 0 0 0 0 0 64 0 0 0.915 30 0.22
26 26 A 0 0 0 0 2 98 0 0 0 0 0 0 0 0 0 0 0 0 0 0 64 0 0 0.080 2 0.99
27 27 A 0 0 0 0 0 0 0 0 23 75 0 2 0 0 0 0 0 0 0 0 64 0 0 0.621 20 0.54
28 28 A 73 3 5 19 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 64 0 0 0.792 26 0.62
29 29 A 94 0 5 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 64 0 0 0.269 8 0.90
30 30 A 86 3 2 0 0 0 0 0 2 2 0 6 0 0 0 0 0 0 0 0 64 0 0 0.607 20 0.69
31 31 A 19 8 2 0 0 0 0 0 66 0 3 3 0 0 0 0 0 0 0 0 64 0 0 1.071 35 0.21
32 32 A 78 2 20 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 64 0 0 0.582 19 0.82
33 33 A 91 0 0 0 0 0 0 0 3 0 0 6 0 0 0 0 0 0 0 0 64 0 0 0.371 12 0.72
34 34 A 9 0 0 0 0 0 0 91 0 0 0 0 0 0 0 0 0 0 0 0 64 0 0 0.311 10 0.75
35 35 A 0 0 0 0 0 0 0 6 94 0 0 0 0 0 0 0 0 0 0 0 64 0 0 0.234 7 0.88
36 36 A 2 0 0 0 9 0 0 67 0 0 0 22 0 0 0 0 0 0 0 0 64 0 0 0.887 29 0.14
37 37 A 5 69 23 0 0 2 0 0 0 0 0 2 0 0 0 0 0 0 0 0 64 0 0 0.871 29 0.57
38 38 A 3 0 0 0 0 0 0 31 66 0 0 0 0 0 0 0 0 0 0 0 64 0 0 0.748 24 0.53
39 39 A 0 0 98 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 64 0 0 0.080 2 0.96
40 40 A 0 0 0 0 0 0 0 0 2 0 2 0 0 0 66 31 0 0 0 0 64 0 0 0.770 25 0.53
41 41 A 0 41 58 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 64 0 0 0.748 24 0.63
42 42 A 0 0 0 2 98 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 64 0 0 0.080 2 0.96
43 43 A 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 100 0 0 0 0 63 0 0 0.000 0 1.00
44 44 A 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 100 0 0 0 0 63 0 0 0.000 0 1.00
45 45 A 2 0 0 0 94 0 0 0 5 0 0 0 0 0 0 0 0 0 0 0 63 0 0 0.272 9 0.71
46 46 A 8 0 0 0 2 0 0 0 8 0 67 16 0 0 0 0 0 0 0 0 63 0 0 1.030 34 0.26
47 47 A 0 0 0 0 0 0 0 0 0 0 90 0 0 0 0 2 0 0 8 0 63 0 0 0.357 11 0.72
48 48 A 0 0 0 0 0 0 0 0 0 0 0 0 0 0 6 94 0 0 0 0 63 0 0 0.236 7 0.91
49 49 A 0 0 0 0 0 0 0 0 100 0 0 0 0 0 0 0 0 0 0 0 62 0 0 0.000 0 1.00
50 50 A 0 0 0 0 0 0 0 0 6 0 88 6 0 0 0 0 0 0 0 0 17 0 0 0.444 14 0.67
## INSERTION LIST
AliNo IPOS JPOS Len Sequence
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