Complet list of 2beg hssp file
Complete list of 2beg.hssp file
HSSP HOMOLOGY DERIVED SECONDARY STRUCTURE OF PROTEINS , VERSION 2.0 2011
PDBID 2BEG
THRESHOLD according to: t(L)=(290.15 * L ** -0.562) + 5
REFERENCE Sander C., Schneider R. : Database of homology-derived protein structures. Proteins, 9:56-68 (1991).
CONTACT Maintained at http://www.cmbi.ru.nl/ by Maarten L. Hekkelman
DATE file generated on 2014-05-16
HEADER PROTEIN FIBRIL 24-OCT-05 2BEG
COMPND MOL_ID: 1; MOLECULE: AMYLOID BETA A4 PROTEIN; CHAIN: A, B, C, D, E; FR
SOURCE MOL_ID: 1; ORGANISM_SCIENTIFIC: HOMO SAPIENS; ORGANISM_COMMON: HUMAN;
AUTHOR T.LUHRS,C.RITTER,M.ADRIAN,D.RIEK-LOHER,B.BOHRMANN,H.DOBELI, D.SCHUBERT
DBREF 2BEG A 1 42 UNP P05067 A4_HUMAN 672 713
DBREF 2BEG B 1 42 UNP P05067 A4_HUMAN 672 713
DBREF 2BEG C 1 42 UNP P05067 A4_HUMAN 672 713
DBREF 2BEG D 1 42 UNP P05067 A4_HUMAN 672 713
DBREF 2BEG E 1 42 UNP P05067 A4_HUMAN 672 713
SEQLENGTH 26
NCHAIN 5 chain(s) in 2BEG data set
KCHAIN 1 chain(s) used here ; chains(s) : A
NALIGN 199
NOTATION : ID: EMBL/SWISSPROT identifier of the aligned (homologous) protein
NOTATION : STRID: if the 3-D structure of the aligned protein is known, then STRID is the Protein Data Bank identifier as taken
NOTATION : from the database reference or DR-line of the EMBL/SWISSPROT entry
NOTATION : %IDE: percentage of residue identity of the alignment
NOTATION : %SIM (%WSIM): (weighted) similarity of the alignment
NOTATION : IFIR/ILAS: first and last residue of the alignment in the test sequence
NOTATION : JFIR/JLAS: first and last residue of the alignment in the alignend protein
NOTATION : LALI: length of the alignment excluding insertions and deletions
NOTATION : NGAP: number of insertions and deletions in the alignment
NOTATION : LGAP: total length of all insertions and deletions
NOTATION : LSEQ2: length of the entire sequence of the aligned protein
NOTATION : ACCNUM: SwissProt accession number
NOTATION : PROTEIN: one-line description of aligned protein
NOTATION : SeqNo,PDBNo,AA,STRUCTURE,BP1,BP2,ACC: sequential and PDB residue numbers, amino acid (lower case = Cys), secondary
NOTATION : structure, bridge partners, solvent exposure as in DSSP (Kabsch and Sander, Biopolymers 22, 2577-2637(1983)
NOTATION : VAR: sequence variability on a scale of 0-100 as derived from the NALIGN alignments
NOTATION : pair of lower case characters (AvaK) in the alignend sequence bracket a point of insertion in this sequence
NOTATION : dots (....) in the alignend sequence indicate points of deletion in this sequence
NOTATION : SEQUENCE PROFILE: relative frequency of an amino acid type at each position. Asx and Glx are in their
NOTATION : acid/amide form in proportion to their database frequencies
NOTATION : NOCC: number of aligned sequences spanning this position (including the test sequence)
NOTATION : NDEL: number of sequences with a deletion in the test protein at this position
NOTATION : NINS: number of sequences with an insertion in the test protein at this position
NOTATION : ENTROPY: entropy measure of sequence variability at this position
NOTATION : RELENT: relative entropy, i.e. entropy normalized to the range 0-100
NOTATION : WEIGHT: conservation weight
## PROTEINS : identifier and alignment statistics
NR. ID STRID %IDE %WSIM IFIR ILAS JFIR JLAS LALI NGAP LGAP LSEQ2 ACCNUM PROTEIN
1 : A4_BOVIN 1.00 1.00 1 26 23 48 26 0 0 59 Q28053 Amyloid beta A4 protein (Fragment) OS=Bos taurus GN=APP PE=3 SV=1
2 : A4_CANFA 1.00 1.00 1 26 23 48 26 0 0 58 Q28280 Amyloid beta A4 protein (Fragment) OS=Canis familiaris GN=APP PE=3 SV=1
3 : A4_CAVPO 1.00 1.00 1 26 688 713 26 0 0 770 Q60495 Amyloid beta A4 protein OS=Cavia porcellus GN=APP PE=1 SV=2
4 : A4_FELCA 1.00 1.00 1 24 17 40 24 0 0 40 P86906 Amyloid beta A4 protein (Fragment) OS=Felis catus GN=APP PE=1 SV=1
5 : A4_HUMAN 2LLM 1.00 1.00 1 26 688 713 26 0 0 770 P05067 Amyloid beta A4 protein OS=Homo sapiens GN=APP PE=1 SV=3
6 : A4_MACFA 1.00 1.00 1 26 688 713 26 0 0 770 P53601 Amyloid beta A4 protein OS=Macaca fascicularis GN=APP PE=2 SV=3
7 : A4_MOUSE 2YT1 1.00 1.00 1 26 688 713 26 0 0 770 P12023 Amyloid beta A4 protein OS=Mus musculus GN=App PE=1 SV=3
8 : A4_PANTR 1.00 1.00 1 26 688 713 26 0 0 770 Q5IS80 Amyloid beta A4 protein OS=Pan troglodytes GN=APP PE=2 SV=1
9 : A4_PIG 1.00 1.00 1 26 688 713 26 0 0 770 P79307 Amyloid beta A4 protein OS=Sus scrofa GN=APP PE=2 SV=2
10 : A4_RABIT 1.00 1.00 1 26 22 47 26 0 0 58 Q28748 Amyloid beta A4 protein (Fragment) OS=Oryctolagus cuniculus GN=APP PE=3 SV=1
11 : A4_RAT 1NMJ 1.00 1.00 1 26 688 713 26 0 0 770 P08592 Amyloid beta A4 protein OS=Rattus norvegicus GN=App PE=1 SV=2
12 : A4_SAISC 1.00 1.00 1 26 669 694 26 0 0 751 Q95241 Amyloid beta A4 protein OS=Saimiri sciureus GN=APP PE=2 SV=1
13 : A4_SHEEP 1.00 1.00 1 26 22 47 26 0 0 58 Q28757 Amyloid beta A4 protein (Fragment) OS=Ovis aries GN=APP PE=3 SV=1
14 : A4_TETFL 1.00 1.00 1 26 698 723 26 0 0 780 O73683 Amyloid beta A4 protein OS=Tetraodon fluviatilis GN=app PE=2 SV=1
15 : A4_URSMA 1.00 1.00 1 26 22 47 26 0 0 57 Q29149 Amyloid beta A4 protein (Fragment) OS=Ursus maritimus GN=APP PE=3 SV=1
16 : B4DGD0_HUMAN 1.00 1.00 1 26 632 657 26 0 0 714 B4DGD0 cDNA FLJ50491, highly similar to Amyloid beta A4 protein (APP) (ABPP)(Alzheimer disease amyloid protein) (Cerebral vascularamyloid peptide) (CVAP) (Protease nexin-II) (PN-II)(APPI) (PreA4) OS=Homo sapiens PE=2 SV=1
17 : B4DJT9_HUMAN 1.00 1.00 1 26 578 603 26 0 0 660 B4DJT9 cDNA FLJ59550, highly similar to Homo sapiens amyloid beta (A4) protein, transcript variant 3, mRNA OS=Homo sapiens PE=2 SV=1
18 : B4DM00_HUMAN 1.00 1.00 1 26 446 471 26 0 0 528 B4DM00 cDNA FLJ54367, highly similar to Amyloid beta A4 protein (APP) (ABPP)(Alzheimer disease amyloid protein homolog) OS=Homo sapiens PE=2 SV=1
19 : B4DMD5_HUMAN 1.00 1.00 1 26 540 565 26 0 0 622 B4DMD5 cDNA FLJ54261, highly similar to Homo sapiens amyloid beta (A4) protein, transcript variant 3, mRNA OS=Homo sapiens PE=2 SV=1
20 : B4DQM1_HUMAN 1.00 1.00 1 26 598 623 26 0 0 680 B4DQM1 cDNA FLJ51942, highly similar to Homo sapiens amyloid beta (A4) protein, transcript variant 3, mRNA OS=Homo sapiens PE=2 SV=1
21 : B7Z313_HUMAN 1.00 1.00 1 26 196 221 26 0 0 278 B7Z313 cDNA FLJ50525, highly similar to Amyloid beta A4 protein (APP) (ABPP) (Alzheimer disease amyloid protein homolog) OS=Homo sapiens PE=2 SV=1
22 : D2HDM3_AILME 1.00 1.00 1 26 668 693 26 0 0 750 D2HDM3 Putative uncharacterized protein (Fragment) OS=Ailuropoda melanoleuca GN=PANDA_008804 PE=4 SV=1
23 : E0A3M4_HETGA 1.00 1.00 1 26 35 60 26 0 0 105 E0A3M4 Amyloid beta protein (Fragment) OS=Heterocephalus glaber GN=APP PE=2 SV=1
24 : E1C440_CHICK 1.00 1.00 1 26 653 678 26 0 0 735 E1C440 Uncharacterized protein (Fragment) OS=Gallus gallus GN=APP PE=4 SV=2
25 : E9PEV0_HUMAN 1.00 1.00 1 26 578 603 26 0 0 660 E9PEV0 Gamma-secretase C-terminal fragment 59 OS=Homo sapiens GN=APP PE=2 SV=1
26 : E9PG40_HUMAN 1.00 1.00 1 26 632 657 26 0 0 714 E9PG40 Gamma-secretase C-terminal fragment 59 OS=Homo sapiens GN=APP PE=2 SV=1
27 : F1C7C1_PERFV 1.00 1.00 1 26 279 304 26 0 0 361 F1C7C1 Amyloid beta a4 protein (Fragment) OS=Perca flavescens GN=App PE=2 SV=1
28 : F1P0B2_CHICK 1.00 1.00 1 26 597 622 26 0 0 679 F1P0B2 Uncharacterized protein (Fragment) OS=Gallus gallus GN=APP PE=4 SV=2
29 : F1P603_CANFA 1.00 1.00 1 26 688 713 26 0 0 770 F1P603 Amyloid beta A4 protein OS=Canis familiaris GN=APP PE=4 SV=2
30 : F1P606_CANFA 1.00 1.00 1 26 669 694 26 0 0 751 F1P606 Amyloid beta A4 protein OS=Canis familiaris GN=APP PE=4 SV=2
31 : F1P615_CANFA 1.00 1.00 1 26 632 657 26 0 0 714 F1P615 Amyloid beta A4 protein OS=Canis familiaris GN=APP PE=4 SV=2
32 : F1PC71_CANFA 1.00 1.00 1 26 613 638 26 0 0 695 F1PC71 Amyloid beta A4 protein OS=Canis familiaris GN=APP PE=4 SV=2
33 : F6XKR3_HORSE 1.00 1.00 1 26 650 675 26 0 0 732 F6XKR3 Uncharacterized protein (Fragment) OS=Equus caballus GN=APP PE=4 SV=1
34 : F6XL78_HORSE 1.00 1.00 1 26 669 694 26 0 0 751 F6XL78 Uncharacterized protein (Fragment) OS=Equus caballus GN=APP PE=4 SV=1
35 : F7CLL9_MACMU 1.00 1.00 1 26 557 582 26 0 0 639 F7CLL9 Uncharacterized protein OS=Macaca mulatta GN=LOC100423808 PE=4 SV=1
36 : F7CLM6_MACMU 1.00 1.00 1 26 613 638 26 0 0 695 F7CLM6 Uncharacterized protein OS=Macaca mulatta GN=LOC100423808 PE=4 SV=1
37 : F7CLP0_MACMU 1.00 1.00 1 26 688 713 26 0 0 770 F7CLP0 Uncharacterized protein OS=Macaca mulatta GN=LOC100423808 PE=4 SV=1
38 : F7ELT1_MACMU 1.00 1.00 1 26 670 695 26 0 0 752 F7ELT1 Uncharacterized protein OS=Macaca mulatta GN=LOC100423808 PE=4 SV=1
39 : F7ELT5_MACMU 1.00 1.00 1 26 669 694 26 0 0 751 F7ELT5 Uncharacterized protein OS=Macaca mulatta GN=LOC100423808 PE=4 SV=1
40 : F7FJ79_MACMU 1.00 1.00 1 26 632 657 26 0 0 714 F7FJ79 Uncharacterized protein OS=Macaca mulatta GN=LOC100423808 PE=4 SV=1
41 : G1KQA1_ANOCA 1.00 1.00 1 26 694 719 26 0 0 776 G1KQA1 Uncharacterized protein (Fragment) OS=Anolis carolinensis GN=APP PE=4 SV=1
42 : G1MFV5_AILME 1.00 1.00 1 26 688 713 26 0 0 770 G1MFV5 Uncharacterized protein (Fragment) OS=Ailuropoda melanoleuca GN=APP PE=4 SV=1
43 : G1NNT9_MELGA 1.00 1.00 1 26 653 678 26 0 0 735 G1NNT9 Uncharacterized protein (Fragment) OS=Meleagris gallopavo GN=APP PE=4 SV=2
44 : G1PHP7_MYOLU 1.00 1.00 1 26 689 714 26 0 0 771 G1PHP7 Uncharacterized protein (Fragment) OS=Myotis lucifugus GN=APP PE=4 SV=1
45 : G1QQU0_NOMLE 1.00 1.00 1 26 622 647 26 0 0 704 G1QQU0 Uncharacterized protein OS=Nomascus leucogenys GN=APP PE=4 SV=2
46 : G1SZM2_RABIT 1.00 1.00 1 26 687 712 26 0 0 769 G1SZM2 Uncharacterized protein OS=Oryctolagus cuniculus GN=LOC100009546 PE=4 SV=1
47 : G3HMG4_CRIGR 1.00 1.00 1 26 351 376 26 0 0 433 G3HMG4 Amyloid beta A4 protein OS=Cricetulus griseus GN=I79_011926 PE=4 SV=1
48 : G3NGM2_GASAC 1.00 1.00 1 26 667 692 26 0 0 749 G3NGM2 Uncharacterized protein OS=Gasterosteus aculeatus PE=4 SV=1
49 : G3PQL0_GASAC 1.00 1.00 1 26 705 730 26 0 0 787 G3PQL0 Uncharacterized protein (Fragment) OS=Gasterosteus aculeatus PE=4 SV=1
50 : G3QD87_GORGO 1.00 1.00 1 26 688 713 26 0 0 770 G3QD87 Uncharacterized protein OS=Gorilla gorilla gorilla GN=101132687 PE=4 SV=1
51 : G3S7J3_GORGO 1.00 1.00 1 26 688 713 26 0 0 770 G3S7J3 Uncharacterized protein (Fragment) OS=Gorilla gorilla gorilla GN=101132687 PE=4 SV=1
52 : G3SSG6_LOXAF 1.00 1.00 1 26 669 694 26 0 0 751 G3SSG6 Uncharacterized protein (Fragment) OS=Loxodonta africana GN=APP PE=4 SV=1
53 : G3UL78_LOXAF 1.00 1.00 1 26 198 223 26 0 0 280 G3UL78 Uncharacterized protein (Fragment) OS=Loxodonta africana GN=APP PE=4 SV=1
54 : G3URW3_MELGA 1.00 1.00 1 26 623 648 26 0 0 705 G3URW3 Uncharacterized protein (Fragment) OS=Meleagris gallopavo GN=APP PE=4 SV=1
55 : G3USJ4_MELGA 1.00 1.00 1 26 597 622 26 0 0 679 G3USJ4 Uncharacterized protein (Fragment) OS=Meleagris gallopavo GN=APP PE=4 SV=1
56 : G5BQQ4_HETGA 1.00 1.00 1 26 669 694 26 0 0 751 G5BQQ4 Amyloid beta A4 protein (Fragment) OS=Heterocephalus glaber GN=GW7_00368 PE=4 SV=1
57 : G7MNB1_MACMU 1.00 1.00 1 26 688 713 26 0 0 770 G7MNB1 Alzheimer disease amyloid protein OS=Macaca mulatta GN=APP PE=2 SV=1
58 : G7P1M4_MACFA 1.00 1.00 1 26 447 472 26 0 0 529 G7P1M4 Alzheimer disease amyloid protein (Fragment) OS=Macaca fascicularis GN=EGM_12262 PE=4 SV=1
59 : H0UW66_CAVPO 1.00 1.00 1 26 688 713 26 0 0 770 H0UW66 Amyloid beta A4 protein OS=Cavia porcellus GN=APP PE=4 SV=1
60 : H0VZT1_CAVPO 1.00 1.00 1 26 18 43 26 0 0 43 H0VZT1 Amyloid beta A4 protein OS=Cavia porcellus GN=APP PE=4 SV=1
61 : H0WCQ9_CAVPO 1.00 1.00 1 26 669 694 26 0 0 751 H0WCQ9 Amyloid beta A4 protein (Fragment) OS=Cavia porcellus GN=APP PE=4 SV=1
62 : H0ZTL2_TAEGU 1.00 1.00 1 26 670 695 26 0 0 752 H0ZTL2 Uncharacterized protein (Fragment) OS=Taeniopygia guttata GN=APP PE=4 SV=1
63 : H2LJY4_ORYLA 1.00 1.00 1 26 692 717 26 0 0 742 H2LJY4 Uncharacterized protein (Fragment) OS=Oryzias latipes PE=4 SV=1
64 : H2P2T9_PONAB 1.00 1.00 2 26 655 679 25 0 0 736 H2P2T9 Uncharacterized protein OS=Pongo abelii GN=APP PE=4 SV=1
65 : H2TNW1_TAKRU 1.00 1.00 1 26 682 707 26 0 0 764 H2TNW1 Uncharacterized protein (Fragment) OS=Takifugu rubripes GN=LOC101066792 PE=4 SV=1
66 : H2TNW2_TAKRU 1.00 1.00 1 26 660 685 26 0 0 742 H2TNW2 Uncharacterized protein (Fragment) OS=Takifugu rubripes GN=LOC101066792 PE=4 SV=1
67 : H2TNW3_TAKRU 1.00 1.00 1 26 612 637 26 0 0 694 H2TNW3 Uncharacterized protein (Fragment) OS=Takifugu rubripes GN=LOC101066792 PE=4 SV=1
68 : H2TNW4_TAKRU 1.00 1.00 6 26 534 554 21 0 0 610 H2TNW4 Uncharacterized protein (Fragment) OS=Takifugu rubripes GN=LOC101066792 PE=4 SV=1
69 : H3BXB8_TETNG 1.00 1.00 1 26 656 681 26 0 0 738 H3BXB8 Uncharacterized protein OS=Tetraodon nigroviridis PE=4 SV=1
70 : H3BYK8_TETNG 1.00 1.00 1 26 668 693 26 0 0 750 H3BYK8 Uncharacterized protein OS=Tetraodon nigroviridis PE=4 SV=1
71 : H3C1S2_TETNG 1.00 1.00 1 26 590 615 26 0 0 672 H3C1S2 Uncharacterized protein OS=Tetraodon nigroviridis PE=4 SV=1
72 : H3C327_TETNG 1.00 1.00 1 26 688 713 26 0 0 770 H3C327 Uncharacterized protein (Fragment) OS=Tetraodon nigroviridis PE=4 SV=1
73 : H3D8S6_TETNG 1.00 1.00 1 26 674 699 26 0 0 756 H3D8S6 Uncharacterized protein (Fragment) OS=Tetraodon nigroviridis PE=4 SV=1
74 : H3DAM0_TETNG 1.00 1.00 1 26 646 671 26 0 0 728 H3DAM0 Uncharacterized protein OS=Tetraodon nigroviridis PE=4 SV=1
75 : H7C104_HUMAN 1.00 1.00 1 24 257 280 24 0 0 280 H7C104 Amyloid beta A4 protein (Fragment) OS=Homo sapiens GN=APP PE=2 SV=2
76 : I0FGN2_MACMU 1.00 1.00 1 26 613 638 26 0 0 695 I0FGN2 Amyloid beta A4 protein isoform c OS=Macaca mulatta GN=APP PE=2 SV=1
77 : I0FGN3_MACMU 1.00 1.00 1 26 669 694 26 0 0 751 I0FGN3 Amyloid beta A4 protein isoform b OS=Macaca mulatta GN=APP PE=2 SV=1
78 : I0FRG1_MACMU 1.00 1.00 1 26 687 712 26 0 0 769 I0FRG1 Amyloid beta A4 protein isoform a OS=Macaca mulatta GN=APP PE=2 SV=1
79 : I3K2G0_ORENI 1.00 1.00 1 26 702 727 26 0 0 784 I3K2G0 Uncharacterized protein OS=Oreochromis niloticus GN=LOC100694218 PE=4 SV=1
80 : I3K2G1_ORENI 1.00 1.00 1 26 694 719 26 0 0 776 I3K2G1 Uncharacterized protein (Fragment) OS=Oreochromis niloticus GN=LOC100694218 PE=4 SV=1
81 : J3S3Z4_CROAD 1.00 1.00 1 26 668 693 26 0 0 750 J3S3Z4 Amyloid beta A4 protein-like OS=Crotalus adamanteus PE=2 SV=1
82 : K9IN53_DESRO 1.00 1.00 1 26 595 620 26 0 0 677 K9IN53 Putative conserved secreted mucin OS=Desmodus rotundus PE=2 SV=1
83 : K9IZI9_DESRO 1.00 1.00 1 26 670 695 26 0 0 752 K9IZI9 Putative conserved secreted mucin OS=Desmodus rotundus PE=2 SV=1
84 : K9IZK4_DESRO 1.00 1.00 1 26 688 713 26 0 0 770 K9IZK4 Putative conserved secreted mucin OS=Desmodus rotundus PE=2 SV=1
85 : K9J2F8_DESRO 1.00 1.00 1 26 613 638 26 0 0 695 K9J2F8 Putative conserved secreted mucin OS=Desmodus rotundus PE=2 SV=1
86 : K9KAU3_HORSE 1.00 1.00 1 26 170 195 26 0 0 252 K9KAU3 Amyloid beta A4 protein-like protein (Fragment) OS=Equus caballus PE=2 SV=1
87 : L5KXN3_PTEAL 1.00 1.00 1 26 666 691 26 0 0 748 L5KXN3 Amyloid beta A4 protein OS=Pteropus alecto GN=PAL_GLEAN10018500 PE=4 SV=1
88 : L5M5V8_MYODS 1.00 1.00 1 26 253 278 26 0 0 335 L5M5V8 Amyloid beta A4 protein OS=Myotis davidii GN=MDA_GLEAN10015941 PE=4 SV=1
89 : L7XCZ9_HUMAN 1.00 1.00 2 26 1 25 25 0 0 49 L7XCZ9 Amyloid beta A4 protein (Fragment) OS=Homo sapiens GN=APP PE=2 SV=1
90 : L8I4L3_9CETA 1.00 1.00 1 26 641 666 26 0 0 723 L8I4L3 Amyloid beta A4 protein (Fragment) OS=Bos mutus GN=M91_03351 PE=4 SV=1
91 : L9JEB8_TUPCH 1.00 1.00 1 26 643 668 26 0 0 725 L9JEB8 Amyloid beta A4 protein OS=Tupaia chinensis GN=TREES_T100005586 PE=4 SV=1
92 : M1EDY4_MUSPF 1.00 1.00 1 26 324 349 26 0 0 405 M1EDY4 Amyloid beta protein (Fragment) OS=Mustela putorius furo PE=2 SV=1
93 : M3XPJ8_MUSPF 1.00 1.00 1 26 548 573 26 0 0 630 M3XPJ8 Uncharacterized protein OS=Mustela putorius furo GN=APP PE=4 SV=1
94 : M4AC86_XIPMA 1.00 1.00 1 26 614 639 26 0 0 696 M4AC86 Uncharacterized protein OS=Xiphophorus maculatus PE=4 SV=1
95 : O35463_CRIGR 1.00 1.00 1 26 37 62 26 0 0 79 O35463 Alzheimer's amyloid beta protein (Fragment) OS=Cricetulus griseus GN=beta APP PE=2 SV=1
96 : O93296_CHICK 1.00 1.00 1 26 452 477 26 0 0 534 O93296 Amyloid protein (Fragment) OS=Gallus gallus PE=2 SV=1
97 : O97917_BOVIN 1.00 1.00 2 26 1 25 25 0 0 49 O97917 Amyloid protein (Fragment) OS=Bos taurus GN=APP PE=4 SV=1
98 : Q08E54_BOVIN 1.00 1.00 1 26 613 638 26 0 0 695 Q08E54 Amyloid beta (A4) protein OS=Bos taurus GN=APP PE=2 SV=1
99 : Q2XQ98_PIG 1.00 1.00 2 26 1 25 25 0 0 49 Q2XQ98 Amyloid protein (Fragment) OS=Sus scrofa GN=APP PE=2 SV=1
100 : Q2XQ99_PIG 1.00 1.00 1 26 669 694 26 0 0 751 Q2XQ99 Amyloid beta A4 protein OS=Sus scrofa GN=APP PE=2 SV=1
101 : Q2XQA0_PIG 1.00 1.00 1 26 613 638 26 0 0 695 Q2XQA0 Amyloid beta A4 protein OS=Sus scrofa GN=APP PE=2 SV=1
102 : Q3TWF3_MOUSE 1.00 1.00 1 26 670 695 26 0 0 752 Q3TWF3 Putative uncharacterized protein OS=Mus musculus GN=App PE=2 SV=1
103 : Q3TXI9_MOUSE 1.00 1.00 1 26 670 695 26 0 0 752 Q3TXI9 Putative uncharacterized protein OS=Mus musculus GN=App PE=2 SV=1
104 : Q4R4R8_MACFA 1.00 1.00 1 26 669 694 26 0 0 751 Q4R4R8 Brain cDNA, clone: QflA-13524, similar to human amyloid beta (A4) protein (protease nexin-II,Alzheimer disease) (APP), transcript variant 2, OS=Macaca fascicularis PE=2 SV=1
105 : Q4RY33_TETNG 1.00 1.00 1 26 672 697 26 0 0 754 Q4RY33 Chromosome 3 SCAF14978, whole genome shotgun sequence. (Fragment) OS=Tetraodon nigroviridis GN=GSTENG00027170001 PE=4 SV=1
106 : Q4S0J4_TETNG 1.00 1.00 1 26 677 702 26 0 0 759 Q4S0J4 Chromosome 2 SCAF14781, whole genome shotgun sequence OS=Tetraodon nigroviridis GN=GSTENG00025991001 PE=4 SV=1
107 : Q53ZT3_MOUSE 1.00 1.00 1 26 688 713 26 0 0 770 Q53ZT3 Amyloid-beta protein-like protein long isoform OS=Mus musculus GN=App PE=2 SV=1
108 : Q56JJ6_GRAGR 1.00 1.00 1 26 17 42 26 0 0 42 Q56JJ6 Amyloid beta protein (Fragment) OS=Grampus griseus PE=2 SV=1
109 : Q56JJ7_TURTR 1.00 1.00 1 26 17 42 26 0 0 42 Q56JJ7 Amyloid beta protein (Fragment) OS=Tursiops truncatus PE=2 SV=1
110 : Q56JK2_STECO 1.00 1.00 1 26 667 692 26 0 0 749 Q56JK2 Beta-amyloid protein 749 OS=Stenella coeruleoalba PE=2 SV=1
111 : Q56JK3_CANFA 1.00 1.00 1 26 613 638 26 0 0 695 Q56JK3 Beta-amyloid protein 695 OS=Canis familiaris PE=2 SV=1
112 : Q56JK4_CANFA 1.00 1.00 1 26 632 657 26 0 0 714 Q56JK4 Beta-amyloid protein 714 OS=Canis familiaris PE=2 SV=1
113 : Q56JK5_CANFA 1.00 1.00 1 26 669 694 26 0 0 751 Q56JK5 Beta-amyloid protein 751 OS=Canis familiaris PE=2 SV=1
114 : Q56JK6_CANFA 1.00 1.00 1 26 688 713 26 0 0 770 Q56JK6 Beta-amyloid protein 770 OS=Canis familiaris PE=2 SV=1
115 : Q5R477_PONAB 1.00 1.00 1 26 613 638 26 0 0 695 Q5R477 Putative uncharacterized protein DKFZp459D212 OS=Pongo abelii GN=DKFZp459D212 PE=2 SV=1
116 : Q6GR78_MOUSE 1.00 1.00 1 26 613 638 26 0 0 695 Q6GR78 Amyloid beta (A4) protein OS=Mus musculus GN=App PE=2 SV=1
117 : Q6P6Q5_RAT 1.00 1.00 1 26 651 676 26 0 0 733 Q6P6Q5 App protein OS=Rattus norvegicus GN=App PE=2 SV=1
118 : Q6RH28_CANFA 1.00 1.00 1 26 669 694 26 0 0 751 Q6RH28 Beta amyloid protein isoform APP751 OS=Canis familiaris GN=beta APP PE=2 SV=1
119 : Q6RH29_CANFA 1.00 1.00 1 26 613 638 26 0 0 695 Q6RH29 Beta amyloid protein isoform APP695 OS=Canis familiaris GN=beta APP PE=2 SV=1
120 : Q6RH30_CANFA 1.00 1.00 1 26 688 713 26 0 0 770 Q6RH30 Beta amyloid protein isoform APP770 OS=Canis familiaris GN=beta APP PE=2 SV=1
121 : Q7M088_CAVPO 1.00 1.00 1 26 17 42 26 0 0 42 Q7M088 Beta-amyloid protein (Fragment) OS=Cavia porcellus PE=1 SV=1
122 : Q8BPC7_MOUSE 1.00 1.00 1 26 302 327 26 0 0 384 Q8BPC7 Putative uncharacterized protein (Fragment) OS=Mus musculus GN=App PE=2 SV=1
123 : Q8BPV5_MOUSE 1.00 1.00 1 26 136 161 26 0 0 218 Q8BPV5 Putative uncharacterized protein (Fragment) OS=Mus musculus GN=App PE=2 SV=1
124 : Q8JH58_CHESE 1.00 1.00 1 26 31 56 26 0 0 113 Q8JH58 Amyloid beta protein (Fragment) OS=Chelydra serpentina PE=2 SV=1
125 : Q9DGJ7_CHICK 1.00 1.00 1 26 669 694 26 0 0 751 Q9DGJ7 Beta-amyloid protein 751 isoform OS=Gallus gallus PE=2 SV=1
126 : Q9DGJ8_CHICK 1.00 1.00 1 26 613 638 26 0 0 695 Q9DGJ8 Beta-amyloid protein 695 isoform OS=Gallus gallus PE=2 SV=1
127 : Q9PVL1_CHICK 1.00 1.00 1 26 488 513 26 0 0 569 Q9PVL1 Amyloid protein (Fragment) OS=Gallus gallus GN=APP PE=2 SV=1
128 : S5WHW2_TUPBE 1.00 1.00 1 26 613 638 26 0 0 695 S5WHW2 APP OS=Tupaia belangeri PE=2 SV=1
129 : S9XY19_9CETA 1.00 1.00 1 26 367 392 26 0 0 449 S9XY19 Amyloid beta A4 protein-like isoform 1 OS=Camelus ferus GN=CB1_000876006 PE=4 SV=1
130 : T1E6J6_CROHD 1.00 1.00 1 26 668 693 26 0 0 750 T1E6J6 Amyloid beta A4 protein-like protein OS=Crotalus horridus PE=2 SV=1
131 : U3BFP5_CALJA 1.00 1.00 1 26 613 638 26 0 0 695 U3BFP5 Amyloid beta A4 protein isoform c OS=Callithrix jacchus GN=APP PE=2 SV=1
132 : U3BYM5_CALJA 1.00 1.00 1 26 669 694 26 0 0 751 U3BYM5 Amyloid beta A4 protein isoform b OS=Callithrix jacchus GN=APP PE=2 SV=1
133 : U3DDZ5_CALJA 1.00 1.00 1 26 670 695 26 0 0 752 U3DDZ5 Amyloid beta A4 protein isoform h OS=Callithrix jacchus GN=APP PE=2 SV=1
134 : U3EFG5_CALJA 1.00 1.00 1 26 688 713 26 0 0 770 U3EFG5 Amyloid beta A4 protein isoform a OS=Callithrix jacchus GN=APP PE=2 SV=1
135 : U3FGW5_CALJA 1.00 1.00 1 26 595 620 26 0 0 677 U3FGW5 Amyloid beta A4 protein isoform j OS=Callithrix jacchus GN=APP PE=2 SV=1
136 : U3FL54_CALJA 1.00 1.00 1 26 651 676 26 0 0 733 U3FL54 Amyloid beta A4 protein isoform i OS=Callithrix jacchus GN=APP PE=2 SV=1
137 : U3IMZ0_ANAPL 1.00 1.00 1 26 125 150 26 0 0 207 U3IMZ0 Uncharacterized protein (Fragment) OS=Anas platyrhynchos GN=APP PE=4 SV=1
138 : U3IMZ9_ANAPL 1.00 1.00 1 26 271 296 26 0 0 353 U3IMZ9 Uncharacterized protein (Fragment) OS=Anas platyrhynchos GN=APP PE=4 SV=1
139 : U3KBV2_FICAL 1.00 1.00 1 26 656 681 26 0 0 738 U3KBV2 Uncharacterized protein (Fragment) OS=Ficedula albicollis GN=APP PE=4 SV=1
140 : W5MXT3_LEPOC 1.00 1.00 1 26 664 689 26 0 0 746 W5MXT3 Uncharacterized protein (Fragment) OS=Lepisosteus oculatus PE=4 SV=1
141 : W5Q0C6_SHEEP 1.00 1.00 1 26 688 713 26 0 0 770 W5Q0C6 Amyloid beta A4 protein OS=Ovis aries GN=APP PE=4 SV=1
142 : A4_TAKRU 0.96 1.00 1 26 655 680 26 0 0 737 O93279 Amyloid beta A4 protein OS=Takifugu rubripes GN=app PE=3 SV=1
143 : F1R9V9_DANRE 0.96 1.00 1 26 351 376 26 0 0 433 F1R9V9 Uncharacterized protein (Fragment) OS=Danio rerio GN=appa PE=4 SV=1
144 : F6VZ17_CALJA 0.96 1.00 1 26 446 471 26 0 0 528 F6VZ17 Uncharacterized protein OS=Callithrix jacchus GN=APP PE=4 SV=1
145 : F6ZWG7_CALJA 0.96 1.00 1 26 688 713 26 0 0 770 F6ZWG7 Uncharacterized protein OS=Callithrix jacchus GN=APP PE=4 SV=1
146 : F6ZXB5_CALJA 0.96 1.00 1 26 669 694 26 0 0 751 F6ZXB5 Uncharacterized protein OS=Callithrix jacchus GN=APP PE=4 SV=1
147 : F7BG93_CALJA 0.96 1.00 1 26 578 603 26 0 0 660 F7BG93 Uncharacterized protein OS=Callithrix jacchus GN=APP PE=4 SV=1
148 : F7BVA8_CALJA 0.96 1.00 1 26 540 565 26 0 0 622 F7BVA8 Uncharacterized protein OS=Callithrix jacchus GN=APP PE=4 SV=1
149 : F7D9N7_XENTR 0.96 1.00 1 26 689 714 26 0 0 771 F7D9N7 Uncharacterized protein (Fragment) OS=Xenopus tropicalis GN=app PE=4 SV=1
150 : F7FDC4_CALJA 0.96 1.00 1 26 632 657 26 0 0 714 F7FDC4 Uncharacterized protein OS=Callithrix jacchus GN=APP PE=4 SV=1
151 : F7HVD8_CALJA 0.96 1.00 1 26 598 623 26 0 0 680 F7HVD8 Uncharacterized protein OS=Callithrix jacchus GN=APP PE=4 SV=1
152 : F7HZ59_CALJA 0.96 1.00 1 26 613 638 26 0 0 695 F7HZ59 Uncharacterized protein OS=Callithrix jacchus GN=APP PE=4 SV=1
153 : G5DY97_9PIPI 0.96 1.00 1 26 136 161 26 0 0 210 G5DY97 Putative beta-amyloid a4 (Fragment) OS=Pipa carvalhoi PE=2 SV=1
154 : H2TSC9_TAKRU 0.96 1.00 1 26 667 692 26 0 0 749 H2TSC9 Uncharacterized protein OS=Takifugu rubripes GN=LOC101078447 PE=4 SV=1
155 : H2TSD0_TAKRU 0.96 1.00 1 26 653 678 26 0 0 735 H2TSD0 Uncharacterized protein OS=Takifugu rubripes GN=LOC101078447 PE=4 SV=1
156 : H2TSD1_TAKRU 0.96 1.00 1 26 611 636 26 0 0 693 H2TSD1 Uncharacterized protein OS=Takifugu rubripes GN=LOC101078447 PE=4 SV=1
157 : H2TSD2_TAKRU 0.96 1.00 1 26 280 305 26 0 0 362 H2TSD2 Uncharacterized protein OS=Takifugu rubripes GN=LOC101078447 PE=4 SV=1
158 : H2ZW72_LATCH 0.96 1.00 1 26 570 595 26 0 0 652 H2ZW72 Uncharacterized protein OS=Latimeria chalumnae PE=4 SV=1
159 : I6ZM20_DANRE 0.96 1.00 1 26 600 625 26 0 0 682 I6ZM20 Amyloid beta protein a OS=Danio rerio GN=appa PE=2 SV=1
160 : M4AE25_XIPMA 0.96 1.00 1 26 625 650 26 0 0 707 M4AE25 Uncharacterized protein OS=Xiphophorus maculatus PE=4 SV=1
161 : Q6DJB6_XENTR 0.96 1.00 1 26 668 693 26 0 0 750 Q6DJB6 Amyloid beta (A4) protein OS=Xenopus tropicalis GN=app PE=2 SV=1
162 : Q6NRR1_XENLA 0.96 1.00 1 26 667 692 26 0 0 749 Q6NRR1 App protein OS=Xenopus laevis GN=app PE=2 SV=1
163 : Q6NUZ1_DANRE 0.96 1.00 1 26 656 681 26 0 0 738 Q6NUZ1 Amyloid beta (A4) protein a OS=Danio rerio GN=appa PE=2 SV=1
164 : Q7ZZT1_DANRE 0.96 1.00 1 26 596 621 26 0 0 678 Q7ZZT1 Amyloid protein a variant 2 OS=Danio rerio GN=appa PE=2 SV=1
165 : Q8UUI8_DANRE 0.96 1.00 1 26 275 300 26 0 0 357 Q8UUI8 Putative mebrane protein (Fragment) OS=Danio rerio GN=appa PE=2 SV=1
166 : Q8UUS0_DANRE 0.96 1.00 1 26 390 415 26 0 0 472 Q8UUS0 Putative membrane protein (Fragment) OS=Danio rerio GN=appa PE=2 SV=1
167 : Q90W28_DANRE 0.96 1.00 1 26 656 681 26 0 0 738 Q90W28 Amyloid protein OS=Danio rerio GN=appa PE=2 SV=1
168 : Q91963_9PIPI 0.96 1.00 1 26 665 690 26 0 0 747 Q91963 APP747 OS=Xenopus GN=APP747 PE=2 SV=1
169 : Q98SG0_XENLA 0.96 1.00 1 26 611 636 26 0 0 693 Q98SG0 Beta-amyloid protein A (Precursor) OS=Xenopus laevis GN=app PE=2 SV=1
170 : Q9I9E7_DANRE 0.96 1.00 1 26 530 555 26 0 0 612 Q9I9E7 Amyloid protein (Fragment) OS=Danio rerio GN=appa PE=2 SV=1
171 : S7PAA7_MYOBR 0.96 1.00 1 26 735 760 26 0 0 817 S7PAA7 Amyloid beta A4 protein OS=Myotis brandtii GN=D623_10008979 PE=4 SV=1
172 : V8PCH2_OPHHA 0.96 1.00 1 26 656 681 26 0 0 738 V8PCH2 Amyloid beta A4 protein (Fragment) OS=Ophiophagus hannah GN=APP PE=4 SV=1
173 : V9KDA3_CALMI 0.96 1.00 1 26 671 696 26 0 0 753 V9KDA3 Amyloid beta A4 protein-like protein OS=Callorhynchus milii PE=2 SV=1
174 : V9KFG0_CALMI 0.96 1.00 1 26 615 640 26 0 0 697 V9KFG0 Amyloid beta A4 protein OS=Callorhynchus milii PE=2 SV=1
175 : W5L6V9_ASTMX 0.96 1.00 1 26 791 816 26 0 0 873 W5L6V9 Uncharacterized protein OS=Astyanax mexicanus PE=4 SV=1
176 : W5U9W6_ICTPU 0.96 1.00 1 26 673 698 26 0 0 754 W5U9W6 Amyloid beta A4 protein OS=Ictalurus punctatus GN=app PE=2 SV=1
177 : H2TNW0_TAKRU 0.95 1.00 5 26 672 693 22 0 0 750 H2TNW0 Uncharacterized protein (Fragment) OS=Takifugu rubripes GN=LOC101066792 PE=4 SV=1
178 : I3KA26_ORENI 0.92 0.96 1 26 611 636 26 0 0 693 I3KA26 Uncharacterized protein OS=Oreochromis niloticus GN=LOC100709268 PE=4 SV=1
179 : I3KA27_ORENI 0.92 0.96 1 26 668 693 26 0 0 750 I3KA27 Uncharacterized protein (Fragment) OS=Oreochromis niloticus GN=LOC100709268 PE=4 SV=1
180 : O57394_NARJA 0.92 0.96 1 26 617 642 26 0 0 699 O57394 EL amyloid protein 699 OS=Narke japonica GN=el app699 PE=2 SV=1
181 : Q7ZXQ0_XENLA 0.92 1.00 1 26 613 638 26 0 0 695 Q7ZXQ0 MGC52816 protein OS=Xenopus laevis GN=MGC52816 PE=2 SV=1
182 : Q98SF9_XENLA 0.92 1.00 1 26 613 638 26 0 0 695 Q98SF9 Beta-amyloid protein B (Precursor) OS=Xenopus laevis GN=app PE=2 SV=1
183 : W5K5D8_ASTMX 0.92 1.00 2 26 682 706 25 0 0 763 W5K5D8 Uncharacterized protein OS=Astyanax mexicanus PE=4 SV=1
184 : W5K5E1_ASTMX 0.92 1.00 2 26 678 702 25 0 0 759 W5K5E1 Uncharacterized protein (Fragment) OS=Astyanax mexicanus PE=4 SV=1
185 : B0V0E4_DANRE 0.88 1.00 1 26 612 637 26 0 0 694 B0V0E4 Uncharacterized protein OS=Danio rerio GN=appb PE=4 SV=1
186 : B0V0E5_DANRE 0.88 1.00 1 26 669 694 26 0 0 751 B0V0E5 Uncharacterized protein OS=Danio rerio GN=appb PE=1 SV=1
187 : F1R8S2_DANRE 0.88 1.00 1 26 280 305 26 0 0 362 F1R8S2 Uncharacterized protein OS=Danio rerio GN=appb PE=4 SV=1
188 : F1RC40_DANRE 0.88 1.00 1 26 280 305 26 0 0 362 F1RC40 Uncharacterized protein OS=Danio rerio GN=appb PE=4 SV=1
189 : F6RJV8_MONDO 0.88 0.96 1 26 591 616 26 0 0 673 F6RJV8 Uncharacterized protein OS=Monodelphis domestica GN=APP PE=4 SV=2
190 : G3VGV4_SARHA 0.88 1.00 1 26 668 693 26 0 0 750 G3VGV4 Uncharacterized protein OS=Sarcophilus harrisii GN=APP PE=4 SV=1
191 : G3VGV5_SARHA 0.88 1.00 1 26 667 692 26 0 0 749 G3VGV5 Uncharacterized protein (Fragment) OS=Sarcophilus harrisii GN=APP PE=4 SV=1
192 : H2LYH0_ORYLA 0.88 1.00 2 26 668 692 25 0 0 749 H2LYH0 Uncharacterized protein OS=Oryzias latipes GN=LOC101172288 PE=4 SV=1
193 : I6Z1P1_DANRE 0.88 1.00 1 26 612 637 26 0 0 694 I6Z1P1 Amyloid beta protein b OS=Danio rerio GN=appb PE=2 SV=1
194 : Q3MQ25_ANTST 0.88 1.00 1 26 32 57 26 0 0 64 Q3MQ25 Amyloid beta A4 protein (Fragment) OS=Antechinus stuartii GN=app PE=2 SV=1
195 : Q5XIY5_DANRE 0.88 1.00 1 26 280 305 26 0 0 362 Q5XIY5 Appb protein OS=Danio rerio GN=appb PE=2 SV=1
196 : Q8UUI7_DANRE 0.88 1.00 1 26 157 182 26 0 0 239 Q8UUI7 Putative membrane protein (Fragment) OS=Danio rerio GN=appb PE=2 SV=1
197 : Q8UUR9_DANRE 0.88 1.00 1 26 612 637 26 0 0 694 Q8UUR9 Putative membrane protein OS=Danio rerio GN=appb PE=2 SV=1
198 : B0CM02_DANRE 0.86 1.00 1 22 612 633 22 0 0 666 B0CM02 Appb (Fragment) OS=Danio rerio GN=appb PE=2 SV=1
199 : F1QKA6_DANRE 0.81 0.95 1 21 612 632 21 0 0 660 F1QKA6 Uncharacterized protein OS=Danio rerio GN=appb PE=4 SV=1
## ALIGNMENTS 1 - 70
SeqNo PDBNo AA STRUCTURE BP1 BP2 ACC NOCC VAR ....:....1....:....2....:....3....:....4....:....5....:....6....:....7
1 17 A L 0 0 134 191 1 LLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLL LLL LL
2 18 A V E -a 29 0A 69 198 21 VVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVV VV
3 19 A F E -a 30 0A 73 198 0 FFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFF FF
4 20 A F E +a 31 0A 106 198 8 FFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFF FF
5 21 A A E +a 32 0A 48 199 6 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA AA
6 22 A E E -a 33 0A 83 200 8 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE
7 23 A D E -a 34 0A 40 200 13 DDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDD
8 24 A V E -a 35 0A 71 200 35 VVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVV
9 25 A G E -a 36 0A 48 200 17 GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG
10 26 A S E -a 37 0A 47 200 0 SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
11 27 A N S S+ 0 0 128 200 0 NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
12 28 A K + 0 0 114 200 0 KKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKK
13 29 A G + 0 0 37 200 0 GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG
14 30 A A S S- 0 0 69 200 0 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
15 31 A I E S+e 42 0B 122 200 0 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII
16 32 A I E -e 43 0B 72 200 0 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII
17 33 A G E -e 44 0B 18 200 0 GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG
18 34 A L E +e 45 0B 82 200 0 LLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLL
19 35 A M E +e 46 0B 109 200 0 MMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMM
20 36 A V E -e 47 0B 106 200 4 VVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVV
21 37 A G E -e 48 0B 30 200 0 GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG
22 38 A G E +e 49 0B 70 199 0 GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG
23 39 A V E +e 50 0B 60 198 4 VVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVV
24 40 A V E +e 51 0B 119 198 0 VVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVV
25 41 A I E e 52 0B 83 196 0 III IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII
26 42 A A 0 0 120 196 0 AAA AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
## ALIGNMENTS 71 - 140
SeqNo PDBNo AA STRUCTURE BP1 BP2 ACC NOCC VAR ....:....8....:....9....:....0....:....1....:....2....:....3....:....4
1 17 A L 0 0 134 191 1 LLLLLLLLLLLLLLLLLL LLLLLLL L LLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLL
2 18 A V E -a 29 0A 69 198 21 VVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVV
3 19 A F E -a 30 0A 73 198 0 FFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFF
4 20 A F E +a 31 0A 106 198 8 FFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFF
5 21 A A E +a 32 0A 48 199 6 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
6 22 A E E -a 33 0A 83 200 8 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE
7 23 A D E -a 34 0A 40 200 13 DDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDD
8 24 A V E -a 35 0A 71 200 35 VVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVV
9 25 A G E -a 36 0A 48 200 17 GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG
10 26 A S E -a 37 0A 47 200 0 SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
11 27 A N S S+ 0 0 128 200 0 NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
12 28 A K + 0 0 114 200 0 KKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKK
13 29 A G + 0 0 37 200 0 GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG
14 30 A A S S- 0 0 69 200 0 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
15 31 A I E S+e 42 0B 122 200 0 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII
16 32 A I E -e 43 0B 72 200 0 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII
17 33 A G E -e 44 0B 18 200 0 GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG
18 34 A L E +e 45 0B 82 200 0 LLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLL
19 35 A M E +e 46 0B 109 200 0 MMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMM
20 36 A V E -e 47 0B 106 200 4 VVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVV
21 37 A G E -e 48 0B 30 200 0 GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG
22 38 A G E +e 49 0B 70 199 0 GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG
23 39 A V E +e 50 0B 60 198 4 VVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVV
24 40 A V E +e 51 0B 119 198 0 VVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVV
25 41 A I E e 52 0B 83 196 0 IIII IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII
26 42 A A 0 0 120 196 0 AAAA AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
## ALIGNMENTS 141 - 199
SeqNo PDBNo AA STRUCTURE BP1 BP2 ACC NOCC VAR ....:....5....:....6....:....7....:....8....:....9....:....0....:....1
1 17 A L 0 0 134 191 1 LLLLLLLLLLLLLLLLLLLLLLLLLLLLLLMVLLLL LLLLL LLLLLLL LLLLLLL
2 18 A V E -a 29 0A 69 198 21 VVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVV VVVVVVVMMMMVVVVMVMMMMM
3 19 A F E -a 30 0A 73 198 0 FFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFF FFFFFFFFFFFFFFLFFFFFFF
4 20 A F E +a 31 0A 106 198 8 FFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFF FFFFFYYLLLLFFFLLFLLLLL
5 21 A A E +a 32 0A 48 199 6 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAPPAAAAAPAAAAAAAAAAASAAAAAAA
6 22 A E E -a 33 0A 83 200 8 EDEEEEEEEEEEEDDDDEEEEEEEEEEEEEEEEEEENDDKDDEEEEEEEEEEEEEEEEE
7 23 A D E -a 34 0A 40 200 13 DDDHHHHHEHHHEDDDDDDDEEDDDDDEEDDDDDDDDDDDEEDDDDDDDDDDDDDDDDD
8 24 A V E -a 35 0A 71 200 35 VVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVAAVVVMMMMMMMMMVMMMMMMM
9 25 A G E -a 36 0A 48 200 17 GGSGGGGGGGGGGGGGGGSSGGSSSSSGGSGGGGSSGGGGGGGGGGGGNSSGGSGGGGG
10 26 A S E -a 37 0A 47 200 0 SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
11 27 A N S S+ 0 0 128 200 0 NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
12 28 A K + 0 0 114 200 0 KKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKK
13 29 A G + 0 0 37 200 0 GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG
14 30 A A S S- 0 0 69 200 0 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
15 31 A I E S+e 42 0B 122 200 0 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII
16 32 A I E -e 43 0B 72 200 0 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII
17 33 A G E -e 44 0B 18 200 0 GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG
18 34 A L E +e 45 0B 82 200 0 LLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLL
19 35 A M E +e 46 0B 109 200 0 MMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMM
20 36 A V E -e 47 0B 106 200 4 VVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVG
21 37 A G E -e 48 0B 30 200 0 GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG
22 38 A G E +e 49 0B 70 199 0 GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG
23 39 A V E +e 50 0B 60 198 4 VVVVVVVVVVVVVVVVVIVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVIIIVVIVVV
24 40 A V E +e 51 0B 119 198 0 VVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVV
25 41 A I E e 52 0B 83 196 0 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII
26 42 A A 0 0 120 196 0 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
## SEQUENCE PROFILE AND ENTROPY
SeqNo PDBNo V L I M F W Y G A P S T C H R K Q E N D NOCC NDEL NINS ENTROPY RELENT WEIGHT
1 17 A 1 99 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 191 0 0 0.065 2 0.99
2 18 A 95 0 0 5 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 198 0 0 0.200 6 0.78
3 19 A 0 1 0 0 99 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 198 0 0 0.032 1 0.99
4 20 A 0 6 0 0 93 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 198 0 0 0.270 9 0.92
5 21 A 0 0 0 0 0 0 0 0 98 2 1 0 0 0 0 0 0 0 0 0 199 0 0 0.110 3 0.93
6 22 A 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 94 0 5 200 0 0 0.246 8 0.91
7 23 A 0 0 0 0 0 0 0 0 0 0 0 0 0 4 0 0 0 4 0 92 200 0 0 0.334 11 0.87
8 24 A 91 0 0 8 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 200 0 0 0.334 11 0.65
9 25 A 0 0 0 0 0 0 0 93 0 0 7 0 0 0 0 0 0 0 0 0 200 0 0 0.285 9 0.82
10 26 A 0 0 0 0 0 0 0 0 0 0 100 0 0 0 0 0 0 0 0 0 200 0 0 0.000 0 1.00
11 27 A 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 100 0 200 0 0 0.000 0 1.00
12 28 A 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 100 0 0 0 0 200 0 0 0.000 0 1.00
13 29 A 0 0 0 0 0 0 0 100 0 0 0 0 0 0 0 0 0 0 0 0 200 0 0 0.000 0 1.00
14 30 A 0 0 0 0 0 0 0 0 100 0 0 0 0 0 0 0 0 0 0 0 200 0 0 0.000 0 1.00
15 31 A 0 0 100 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 200 0 0 0.000 0 1.00
16 32 A 0 0 100 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 200 0 0 0.000 0 1.00
17 33 A 0 0 0 0 0 0 0 100 0 0 0 0 0 0 0 0 0 0 0 0 200 0 0 0.000 0 1.00
18 34 A 0 100 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 200 0 0 0.000 0 1.00
19 35 A 0 0 0 100 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 200 0 0 0.000 0 1.00
20 36 A 100 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 200 0 0 0.031 1 0.95
21 37 A 0 0 0 0 0 0 0 100 0 0 0 0 0 0 0 0 0 0 0 0 200 0 0 0.000 0 1.00
22 38 A 0 0 0 0 0 0 0 100 0 0 0 0 0 0 0 0 0 0 0 0 199 0 0 0.000 0 1.00
23 39 A 97 0 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 198 0 0 0.118 3 0.96
24 40 A 100 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 198 0 0 0.000 0 1.00
25 41 A 0 0 100 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 196 0 0 0.000 0 1.00
26 42 A 0 0 0 0 0 0 0 0 100 0 0 0 0 0 0 0 0 0 0 0 196 0 0 0.000 0 1.00
## INSERTION LIST
AliNo IPOS JPOS Len Sequence
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