Complet list of 2b4n hssp file
Complete list of 2b4n.hssp file
HSSP HOMOLOGY DERIVED SECONDARY STRUCTURE OF PROTEINS , VERSION 2.0 2011
PDBID 2B4N
THRESHOLD according to: t(L)=(290.15 * L ** -0.562) + 5
REFERENCE Sander C., Schneider R. : Database of homology-derived protein structures. Proteins, 9:56-68 (1991).
CONTACT Maintained at http://www.cmbi.ru.nl/ by Maarten L. Hekkelman
DATE file generated on 2014-05-16
HEADER HORMONE/GROWTH FACTOR 26-SEP-05 2B4N
COMPND MOL_ID: 1; MOLECULE: GASTRIC INHIBITORY POLYPEPTIDE; CHAIN: A; FRAGMEN
SOURCE MOL_ID: 1; ORGANISM_SCIENTIFIC: HOMO SAPIENS; ORGANISM_COMMON: HUMAN;
AUTHOR I.ALANA,C.M.HEWAGE,F.P.M.O'HARTE,J.P.G.MALTHOUSE
DBREF 2B4N A 1 42 UNP P09681 GIP_HUMAN 52 93
SEQLENGTH 42
NCHAIN 1 chain(s) in 2B4N data set
NALIGN 97
NOTATION : ID: EMBL/SWISSPROT identifier of the aligned (homologous) protein
NOTATION : STRID: if the 3-D structure of the aligned protein is known, then STRID is the Protein Data Bank identifier as taken
NOTATION : from the database reference or DR-line of the EMBL/SWISSPROT entry
NOTATION : %IDE: percentage of residue identity of the alignment
NOTATION : %SIM (%WSIM): (weighted) similarity of the alignment
NOTATION : IFIR/ILAS: first and last residue of the alignment in the test sequence
NOTATION : JFIR/JLAS: first and last residue of the alignment in the alignend protein
NOTATION : LALI: length of the alignment excluding insertions and deletions
NOTATION : NGAP: number of insertions and deletions in the alignment
NOTATION : LGAP: total length of all insertions and deletions
NOTATION : LSEQ2: length of the entire sequence of the aligned protein
NOTATION : ACCNUM: SwissProt accession number
NOTATION : PROTEIN: one-line description of aligned protein
NOTATION : SeqNo,PDBNo,AA,STRUCTURE,BP1,BP2,ACC: sequential and PDB residue numbers, amino acid (lower case = Cys), secondary
NOTATION : structure, bridge partners, solvent exposure as in DSSP (Kabsch and Sander, Biopolymers 22, 2577-2637(1983)
NOTATION : VAR: sequence variability on a scale of 0-100 as derived from the NALIGN alignments
NOTATION : pair of lower case characters (AvaK) in the alignend sequence bracket a point of insertion in this sequence
NOTATION : dots (....) in the alignend sequence indicate points of deletion in this sequence
NOTATION : SEQUENCE PROFILE: relative frequency of an amino acid type at each position. Asx and Glx are in their
NOTATION : acid/amide form in proportion to their database frequencies
NOTATION : NOCC: number of aligned sequences spanning this position (including the test sequence)
NOTATION : NDEL: number of sequences with a deletion in the test protein at this position
NOTATION : NINS: number of sequences with an insertion in the test protein at this position
NOTATION : ENTROPY: entropy measure of sequence variability at this position
NOTATION : RELENT: relative entropy, i.e. entropy normalized to the range 0-100
NOTATION : WEIGHT: conservation weight
## PROTEINS : identifier and alignment statistics
NR. ID STRID %IDE %WSIM IFIR ILAS JFIR JLAS LALI NGAP LGAP LSEQ2 ACCNUM PROTEIN
1 : F7CST3_CALJA 1.00 1.00 1 42 52 93 42 0 0 153 F7CST3 Uncharacterized protein OS=Callithrix jacchus GN=GIP PE=3 SV=1
2 : F7FHN3_CALJA 1.00 1.00 1 42 52 93 42 0 0 152 F7FHN3 Uncharacterized protein OS=Callithrix jacchus GN=GIP PE=3 SV=1
3 : F7GY24_MACMU 1.00 1.00 1 42 52 93 42 0 0 153 F7GY24 Uncharacterized protein OS=Macaca mulatta GN=GIP PE=3 SV=1
4 : G1QQZ6_NOMLE 1.00 1.00 1 42 52 93 42 0 0 153 G1QQZ6 Uncharacterized protein OS=Nomascus leucogenys GN=GIP PE=3 SV=1
5 : G3RDA9_GORGO 1.00 1.00 1 42 52 93 42 0 0 153 G3RDA9 Uncharacterized protein OS=Gorilla gorilla gorilla GN=101132288 PE=3 SV=1
6 : G3SCT1_GORGO 1.00 1.00 1 42 52 93 42 0 0 153 G3SCT1 Uncharacterized protein OS=Gorilla gorilla gorilla GN=101132288 PE=3 SV=1
7 : G7NHE2_MACMU 1.00 1.00 1 42 52 93 42 0 0 151 G7NHE2 Putative uncharacterized protein OS=Macaca mulatta GN=EGK_08492 PE=3 SV=1
8 : G7PU86_MACFA 1.00 1.00 1 42 52 93 42 0 0 151 G7PU86 Putative uncharacterized protein OS=Macaca fascicularis GN=EGM_07681 PE=3 SV=1
9 : GIP_HUMAN 1T5Q 1.00 1.00 1 42 52 93 42 0 0 153 P09681 Gastric inhibitory polypeptide OS=Homo sapiens GN=GIP PE=1 SV=1
10 : H2NVK0_PONAB 1.00 1.00 1 42 23 64 42 0 0 124 H2NVK0 Uncharacterized protein (Fragment) OS=Pongo abelii GN=GIP PE=3 SV=1
11 : H2QDC7_PANTR 1.00 1.00 1 42 52 93 42 0 0 153 H2QDC7 Uncharacterized protein OS=Pan troglodytes GN=GIP PE=3 SV=1
12 : E2RTE2_CANFA 0.98 1.00 1 42 44 85 42 0 0 144 E2RTE2 Uncharacterized protein OS=Canis familiaris GN=LOC100856162 PE=3 SV=1
13 : G1LEN0_AILME 0.98 1.00 1 42 44 85 42 0 0 144 G1LEN0 Uncharacterized protein OS=Ailuropoda melanoleuca GN=GIP PE=3 SV=1
14 : G3SUF9_LOXAF 0.98 1.00 1 42 44 85 42 0 0 144 G3SUF9 Uncharacterized protein OS=Loxodonta africana GN=GIP PE=3 SV=1
15 : H0X206_OTOGA 0.98 1.00 1 42 52 93 42 0 0 150 H0X206 Uncharacterized protein OS=Otolemur garnettii GN=GIP PE=3 SV=1
16 : I3M3G3_SPETR 0.98 1.00 1 42 44 85 42 0 0 142 I3M3G3 Uncharacterized protein OS=Spermophilus tridecemlineatus GN=GIP PE=3 SV=1
17 : L5JQD8_PTEAL 0.98 1.00 1 42 40 81 42 0 0 138 L5JQD8 Gastric inhibitory polypeptide OS=Pteropus alecto GN=PAL_GLEAN10019694 PE=3 SV=1
18 : L8Y5N4_TUPCH 0.98 1.00 1 42 44 85 42 0 0 176 L8Y5N4 Gastric inhibitory polypeptide OS=Tupaia chinensis GN=TREES_T100015364 PE=3 SV=1
19 : M3WAI1_FELCA 0.98 1.00 1 42 44 85 42 0 0 145 M3WAI1 Uncharacterized protein OS=Felis catus GN=GIP PE=3 SV=1
20 : M3YV87_MUSPF 0.98 1.00 1 42 44 85 42 0 0 144 M3YV87 Uncharacterized protein OS=Mustela putorius furo GN=GIP PE=3 SV=1
21 : G1PJ19_MYOLU 0.95 1.00 1 42 43 84 42 0 0 143 G1PJ19 Uncharacterized protein OS=Myotis lucifugus GN=GIP PE=3 SV=1
22 : G3HJN5_CRIGR 0.95 1.00 1 42 93 134 42 0 0 205 G3HJN5 Gastric inhibitory polypeptide OS=Cricetulus griseus GN=I79_010883 PE=3 SV=1
23 : GIP_PIG 0.95 1.00 1 42 1 42 42 0 0 42 P01281 Gastric inhibitory polypeptide OS=Sus scrofa GN=GIP PE=1 SV=1
24 : GIP_RAT 0.95 1.00 1 42 44 85 42 0 0 144 Q06145 Gastric inhibitory polypeptide OS=Rattus norvegicus GN=Gip PE=2 SV=2
25 : I3LI45_PIG 0.95 1.00 1 42 41 82 42 0 0 82 I3LI45 Uncharacterized protein OS=Sus scrofa GN=LOC100621117 PE=3 SV=1
26 : I3RLE6_PIG 0.95 1.00 1 42 44 85 42 0 0 144 I3RLE6 Gastric inhibitory polypeptide OS=Sus scrofa GN=GIP PE=2 SV=1
27 : D2H576_AILME 0.94 1.00 1 35 20 54 35 0 0 54 D2H576 Putative uncharacterized protein (Fragment) OS=Ailuropoda melanoleuca GN=PANDA_005025 PE=3 SV=1
28 : F1MQC0_BOVIN 0.93 0.98 1 42 46 87 42 0 0 146 F1MQC0 Gastric inhibitory polypeptide OS=Bos taurus GN=GIP PE=3 SV=1
29 : G5C4N3_HETGA 0.93 1.00 1 42 42 83 42 0 0 136 G5C4N3 Gastric inhibitory polypeptide (Fragment) OS=Heterocephalus glaber GN=GW7_21751 PE=3 SV=1
30 : GIP_BOVIN 0.93 0.98 1 42 1 42 42 0 0 42 P09680 Gastric inhibitory polypeptide OS=Bos taurus GN=GIP PE=1 SV=1
31 : GIP_MOUSE 0.93 1.00 1 42 44 85 42 0 0 144 P48756 Gastric inhibitory polypeptide OS=Mus musculus GN=Gip PE=2 SV=2
32 : L8IV68_9CETA 0.93 0.98 1 42 46 87 42 0 0 146 L8IV68 Gastric inhibitory polypeptide (Fragment) OS=Bos mutus GN=M91_15622 PE=3 SV=1
33 : Q3SXG6_MOUSE 0.93 1.00 1 42 44 85 42 0 0 144 Q3SXG6 Gastric inhibitory polypeptide OS=Mus musculus GN=Gip PE=2 SV=1
34 : Q9CVF1_MOUSE 0.93 1.00 1 42 30 71 42 0 0 130 Q9CVF1 Putative uncharacterized protein (Fragment) OS=Mus musculus GN=Gip PE=2 SV=1
35 : W5P9D2_SHEEP 0.93 0.98 1 42 46 87 42 0 0 146 W5P9D2 Uncharacterized protein OS=Ovis aries GN=GIP PE=3 SV=1
36 : G3WME3_SARHA 0.91 0.97 1 34 44 77 34 0 0 78 G3WME3 Uncharacterized protein OS=Sarcophilus harrisii GN=GIP PE=3 SV=1
37 : S7MWG4_MYOBR 0.91 1.00 1 35 43 77 35 0 0 101 S7MWG4 Gastric inhibitory polypeptide OS=Myotis brandtii GN=D623_10017029 PE=3 SV=1
38 : S9X9V9_9CETA 0.91 0.97 1 35 44 78 35 0 0 78 S9X9V9 Uncharacterized protein OS=Camelus ferus GN=CB1_000261070 PE=3 SV=1
39 : H0W5W9_CAVPO 0.90 0.95 1 42 43 84 42 0 0 138 H0W5W9 Uncharacterized protein OS=Cavia porcellus GN=GIP PE=3 SV=1
40 : G1SLR3_RABIT 0.88 1.00 1 42 44 85 42 0 0 145 G1SLR3 Uncharacterized protein OS=Oryctolagus cuniculus GN=GIP PE=3 SV=1
41 : K7E4A9_MONDO 0.86 0.95 1 42 45 86 42 0 0 144 K7E4A9 Uncharacterized protein OS=Monodelphis domestica GN=GIP PE=3 SV=1
42 : B3TDE1_SALSA 0.56 0.74 1 34 41 74 34 0 0 108 B3TDE1 Gastric inhibitory polypeptide OS=Salmo salar GN=Gip PE=4 SV=1
43 : W5KMG2_ASTMX 0.53 0.74 1 34 19 52 34 0 0 86 W5KMG2 Uncharacterized protein (Fragment) OS=Astyanax mexicanus PE=4 SV=1
44 : A1DPK0_CHICK 0.51 0.89 1 35 39 73 35 0 0 150 A1DPK0 Glucose-dependent insulinotropic polypeptide OS=Gallus gallus GN=GIP PE=2 SV=1
45 : G1N5G2_MELGA 0.51 0.89 1 35 39 73 35 0 0 148 G1N5G2 Uncharacterized protein OS=Meleagris gallopavo GN=LOC100547961 PE=4 SV=2
46 : R0JHZ2_ANAPL 0.51 0.89 1 35 15 49 35 0 0 123 R0JHZ2 Gastric inhibitory polypeptide (Fragment) OS=Anas platyrhynchos GN=Anapl_09419 PE=4 SV=1
47 : U3J0H6_ANAPL 0.51 0.89 1 35 40 74 35 0 0 151 U3J0H6 Uncharacterized protein OS=Anas platyrhynchos PE=4 SV=1
48 : D2HQW4_AILME 0.50 0.76 2 35 54 87 34 0 0 179 D2HQW4 Putative uncharacterized protein (Fragment) OS=Ailuropoda melanoleuca GN=PANDA_014319 PE=3 SV=1
49 : E2RPI2_CANFA 0.50 0.74 2 35 54 87 34 0 0 178 E2RPI2 Glucagon OS=Canis familiaris GN=GCG PE=3 SV=2
50 : F1RPQ1_PIG 0.50 0.74 2 35 54 87 34 0 0 180 F1RPQ1 Glucagon OS=Sus scrofa GN=GCG PE=3 SV=1
51 : F7ABP1_HORSE 0.50 0.74 2 35 54 87 34 0 0 180 F7ABP1 Uncharacterized protein OS=Equus caballus GN=GCG PE=3 SV=1
52 : G1QG18_MYOLU 0.50 0.76 2 35 54 87 34 0 0 178 G1QG18 Uncharacterized protein OS=Myotis lucifugus PE=3 SV=1
53 : GLUC_BOVIN 1KX6 0.50 0.74 2 35 54 87 34 0 0 180 P01272 Glucagon OS=Bos taurus GN=GCG PE=1 SV=1
54 : GLUC_CANFA 0.50 0.74 2 35 54 87 34 0 0 180 P29794 Glucagon OS=Canis familiaris GN=GCG PE=1 SV=2
55 : GLUC_PIG 1GCN 0.50 0.74 2 35 54 87 34 0 0 180 P01274 Glucagon OS=Sus scrofa GN=GCG PE=1 SV=4
56 : GLUC_SHEEP 0.50 0.74 2 35 54 87 34 0 0 176 Q8MJ25 Glucagon (Fragment) OS=Ovis aries GN=GCG PE=2 SV=1
57 : L5K2B6_PTEAL 0.50 0.74 2 35 334 367 34 0 0 459 L5K2B6 Seprase OS=Pteropus alecto GN=PAL_GLEAN10025906 PE=3 SV=1
58 : L8IJL8_9CETA 0.50 0.74 2 35 54 87 34 0 0 179 L8IJL8 Glucagon OS=Bos mutus GN=M91_05757 PE=3 SV=1
59 : M3XNA6_MUSPF 0.50 0.76 2 35 54 87 34 0 0 180 M3XNA6 Uncharacterized protein OS=Mustela putorius furo GN=GCG PE=3 SV=1
60 : T0MG31_9CETA 0.50 0.74 2 35 38 71 34 0 0 163 T0MG31 Glucagon-like protein OS=Camelus ferus GN=CB1_000290027 PE=3 SV=1
61 : U3KK79_FICAL 0.50 0.82 1 34 4 37 34 0 0 37 U3KK79 Uncharacterized protein (Fragment) OS=Ficedula albicollis PE=4 SV=1
62 : U6CR11_NEOVI 0.50 0.76 2 35 54 87 34 0 0 180 U6CR11 Glucagon OS=Neovison vison GN=GLUC PE=2 SV=1
63 : W5P8Q7_SHEEP 0.50 0.74 2 35 54 87 34 0 0 180 W5P8Q7 Glucagon OS=Ovis aries GN=GCG PE=3 SV=1
64 : A1DPK4_DANRE 0.49 0.74 1 35 44 78 35 0 0 112 A1DPK4 Glucose-dependent insulinotropic polypeptide OS=Danio rerio GN=gip PE=4 SV=1
65 : A6H8Q5_DANRE 0.49 0.74 1 35 44 78 35 0 0 224 A6H8Q5 Gip protein OS=Danio rerio GN=gip PE=2 SV=1
66 : F1R6N0_DANRE 0.49 0.74 1 35 44 78 35 0 0 112 F1R6N0 Uncharacterized protein OS=Danio rerio GN=gip PE=4 SV=1
67 : A2AS86_MOUSE 0.47 0.74 2 35 54 87 34 0 0 173 A2AS86 Glucagon (Fragment) OS=Mus musculus GN=Gcg PE=3 SV=1
68 : F7EF82_MACMU 0.47 0.74 2 35 57 90 34 0 0 182 F7EF82 Uncharacterized protein OS=Macaca mulatta GN=GCG PE=3 SV=1
69 : F7EF88_MACMU 0.47 0.74 2 35 54 87 34 0 0 180 F7EF88 Uncharacterized protein OS=Macaca mulatta GN=GCG PE=3 SV=1
70 : F7ID40_CALJA 0.47 0.74 2 35 54 87 34 0 0 179 F7ID40 Uncharacterized protein OS=Callithrix jacchus GN=GCG PE=3 SV=1
71 : G1QQ90_NOMLE 0.47 0.74 2 35 137 170 34 0 0 263 G1QQ90 Uncharacterized protein OS=Nomascus leucogenys GN=GCG PE=3 SV=2
72 : G1TRR9_RABIT 0.47 0.74 2 35 54 87 34 0 0 180 G1TRR9 Uncharacterized protein OS=Oryctolagus cuniculus GN=LOC100341777 PE=3 SV=1
73 : G3HZV5_CRIGR 0.47 0.74 2 35 436 469 34 0 0 561 G3HZV5 Seprase OS=Cricetulus griseus GN=I79_016619 PE=3 SV=1
74 : G3QHC4_GORGO 0.47 0.76 2 35 57 90 34 0 0 183 G3QHC4 Uncharacterized protein OS=Gorilla gorilla gorilla GN=101141703 PE=3 SV=1
75 : G3SE96_GORGO 0.47 0.76 2 35 54 87 34 0 0 180 G3SE96 Uncharacterized protein OS=Gorilla gorilla gorilla GN=101141703 PE=3 SV=1
76 : G3SWM5_LOXAF 0.47 0.74 2 35 54 87 34 0 0 178 G3SWM5 Uncharacterized protein OS=Loxodonta africana GN=GCG PE=3 SV=1
77 : G3V6P5_RAT 0.47 0.74 2 35 54 87 34 0 0 180 G3V6P5 Glucagon OS=Rattus norvegicus GN=Gcg PE=3 SV=1
78 : G5AKB5_HETGA 0.47 0.74 2 35 54 87 34 0 0 179 G5AKB5 Glucagon OS=Heterocephalus glaber GN=GW7_07689 PE=3 SV=1
79 : G7N866_MACMU 0.47 0.74 2 35 57 90 34 0 0 182 G7N866 Putative uncharacterized protein OS=Macaca mulatta GN=EGK_04477 PE=3 SV=1
80 : G7PKP1_MACFA 0.47 0.74 2 35 57 90 34 0 0 182 G7PKP1 Putative uncharacterized protein OS=Macaca fascicularis GN=EGM_04002 PE=3 SV=1
81 : GLUC_HUMAN 3IOL 0.47 0.74 2 35 54 87 34 0 0 180 P01275 Glucagon OS=Homo sapiens GN=GCG PE=1 SV=3
82 : GLUC_MESAU 0.47 0.74 2 35 54 87 34 0 0 180 P01273 Glucagon OS=Mesocricetus auratus GN=GCG PE=2 SV=2
83 : GLUC_MOUSE 0.47 0.74 2 35 54 87 34 0 0 180 P55095 Glucagon OS=Mus musculus GN=Gcg PE=1 SV=1
84 : GLUC_RAT 0.47 0.74 2 35 54 87 34 0 0 180 P06883 Glucagon OS=Rattus norvegicus GN=Gcg PE=1 SV=1
85 : H0X7B1_OTOGA 0.47 0.74 2 35 54 87 34 0 0 180 H0X7B1 Uncharacterized protein OS=Otolemur garnettii GN=GCG PE=3 SV=1
86 : H2P7N4_PONAB 0.47 0.74 2 35 54 87 34 0 0 180 H2P7N4 Uncharacterized protein OS=Pongo abelii GN=GCG PE=3 SV=1
87 : H2QIW1_PANTR 0.47 0.74 2 35 54 87 34 0 0 180 H2QIW1 Uncharacterized protein OS=Pan troglodytes GN=GCG PE=3 SV=1
88 : I3M535_SPETR 0.47 0.74 2 35 54 87 34 0 0 180 I3M535 Uncharacterized protein OS=Spermophilus tridecemlineatus GN=GCG PE=3 SV=1
89 : L5LRQ3_MYODS 0.47 0.68 2 35 63 96 34 0 0 186 L5LRQ3 Glucagon OS=Myotis davidii GN=MDA_GLEAN10024211 PE=3 SV=1
90 : L9JDR4_TUPCH 0.47 0.74 2 35 54 87 34 0 0 179 L9JDR4 Glucagon OS=Tupaia chinensis GN=TREES_T100003465 PE=3 SV=1
91 : Q6RYB1_9SAUR 0.47 0.71 2 35 85 118 34 0 0 124 Q6RYB1 Proglucagon (Fragment) OS=Agkistrodon piscivorus PE=2 SV=1
92 : A1DPK2_XENLA 0.46 0.86 1 35 42 76 35 0 0 150 A1DPK2 Glucose-dependent insulinotropic polypeptide OS=Xenopus laevis GN=LOC100036829 PE=2 SV=1
93 : K7FCV1_PELSI 0.46 0.86 1 35 40 74 35 0 0 118 K7FCV1 Uncharacterized protein OS=Pelodiscus sinensis PE=4 SV=1
94 : M7BP38_CHEMY 0.46 0.86 1 35 51 85 35 0 0 346 M7BP38 Vacuolar-sorting protein SNF8 OS=Chelonia mydas GN=UY3_09061 PE=4 SV=1
95 : Q8UWL9_9NEOB 0.44 0.64 2 40 54 92 39 0 0 220 Q8UWL9 Proglucagon OS=Hoplobatrachus rugulosus PE=2 SV=1
96 : M4AHA3_XIPMA 0.43 0.65 2 38 93 129 37 0 0 162 M4AHA3 Uncharacterized protein OS=Xiphophorus maculatus PE=3 SV=1
97 : G3MYS1_BOVIN 0.41 0.68 2 42 54 94 41 0 0 266 G3MYS1 Glucagon OS=Bos taurus GN=GCG PE=3 SV=1
## ALIGNMENTS 1 - 70
SeqNo PDBNo AA STRUCTURE BP1 BP2 ACC NOCC VAR ....:....1....:....2....:....3....:....4....:....5....:....6....:....7
1 1 A Y 0 0 263 55 0 YYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYY Y YYY
2 2 A A + 0 0 76 98 53 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAASSSSSSSSSSSSSSSSSSSSAAASSSS
3 3 A E + 0 0 135 98 40 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEQQQQQQQQQQQQQEQQEEEQQQQ
4 4 A G > - 0 0 39 98 21 GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGSSAAAAGGGGGGGGGGGGGAGGSSSGGGG
5 5 A T T 4 S+ 0 0 112 98 8 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
6 6 A F T >4 S+ 0 0 182 98 12 FFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFIILLLLFFFFFFFFFFFFFLFFIIIFFFF
7 7 A I T 34 S+ 0 0 89 98 79 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIAAAAAATTTTTTTTTTTTTATTAAATTTT
8 8 A S T 3< + 0 0 43 98 2 SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
9 9 A D < + 0 0 106 98 0 DDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDD
10 10 A Y + 0 0 98 98 14 YYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYMIYYYYYYYYYYYYYYYYYYYYIIIYYYY
11 11 A S > + 0 0 79 98 2 SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
12 12 A I T 4 S+ 0 0 155 98 86 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIKKRRRRKKKKKKKKKKKKKRKKKKKKKKK
13 13 A A T > S+ 0 0 38 98 103 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAATAAAATIITTTTYYYYYYYYYYYYYTYYIIIYYYY
14 14 A M H > S+ 0 0 114 98 15 MMMMMMMMMMMMMMMMMMMMMLMMMMMMMMMMMMMMMMMMMMMMMMMLLLLLLLLLLLLLMLLVVVLLLL
15 15 A D H X S+ 0 0 118 98 0 DDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDD
16 16 A K H > S+ 0 0 139 98 74 KKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKSSNNNNSSSSTSSSSSSSSHSSSSSSSSS
17 17 A I H X S+ 0 0 106 98 93 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIMMMMMMRRRRRRRRRRRRRVRRMMMRRRR
18 18 A H H X S+ 0 0 93 98 64 HHHHHHHHHHHRRRRHRRRRRRRRRRRRRRRRRRRMRRRRMVVLLLLRRRRRRRRRRRRRLRRVVVRRRR
19 19 A Q H X S+ 0 0 129 98 76 QQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQKKKKAAAAAAAAAAAAASAAQQQAAAA
20 20 A Q H X S+ 0 0 91 98 27 QQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQKKKKKKQQQQQQQQQQQQQKQQKKKQQQQ
21 21 A D H X S+ 0 0 88 98 20 DDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDNNNNNNDDDDDDDDDDDDDNDDNNNDDDD
22 22 A F H X S+ 0 0 111 98 0 FFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFF
23 23 A V H X S+ 0 0 47 98 1 VVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVV
24 24 A N H X S+ 0 0 87 98 61 NNNNNNNNNNNNNNNNNNNNDNNNNNNNNNNNNNNNDNNNNNNEEEEQQQQEQQQQQQQQEQQNNNQQQQ
25 25 A W H X S+ 0 0 147 98 2 WWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWFFWWWWWWWWWWWWWWWWWWWWFFFWWWW
26 26 A L H < S+ 0 0 79 98 0 LLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLL
27 27 A L H >X S+ 0 0 90 98 11 LLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLMMMMMMMMMMMMMLMMLLLMMMM
28 28 A A H 3< S+ 0 0 47 98 66 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAASAAAASNNAAAASNNNTNNNNNNSNASNNNNNNNN
29 29 A Q T 3< S+ 0 0 140 98 88 QQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQRRRRTTTTSTTTTTTTTRTTQQQTTTT
30 30 A K T <4 S- 0 0 154 98 18 KKKKKKKKKKKKKKKKKKKKKKKKKKKKKKRKRRKKKKKKKKRRRRRKKKKKKKKKKKKKRKKRRRKKKK
31 31 A G < - 0 0 33 98 98 GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGEEEEEERRRRRRRRRRRRRERREEERRRR
32 32 A K + 0 0 178 98 59 KKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKRKKKKKKKNNNNNNNNNNNNNKNNKKKNNNN
33 33 A K + 0 0 157 98 29 KKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKRRRR
34 34 A N + 0 0 127 98 49 NNNNNNNNNNNNNNNNNNNNNNSNSSNSSSSSSSSNNGGSNSSSSSSNNNNNNNNNNNNNSNNSSSNNNN
35 35 A D > - 0 0 89 94 47 DDDDDDDDDDDDDDDNDDDDDDDDDDEDDDDDDDD EEDDS DDDDNNNNNNNNNNNNN NNEEENNNN
36 36 A W T 3 S- 0 0 214 41 55 WWWWWWWWWWWWWWWWWWWWWWWWWW WWWWWWWW WWW
37 37 A K T 3 - 0 0 164 41 35 KKKKKKKKKKKKKKKKKKKKKKKKKK IRIKIKKI SRR
38 38 A H < - 0 0 102 41 30 HHHHHHHHHHHHHHHHHHHHHHHHHH HHHHHHHH HHH
39 39 A N S S+ 0 0 109 40 26 NNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNN NNN
40 40 A I S S- 0 0 142 40 28 IIIIIIIIIIIIIIIIIIIIIIILII IIIIIIII LLI
41 41 A T 0 0 107 39 33 TTTTTTTTTTTTTTTTTTTTTTTTTT TTTTTTTT TTT
42 42 A Q 0 0 219 39 33 QQQQQQQQQQQQQQQQQQQQQQQQQQ QQQQQQQQ QQE
## ALIGNMENTS 71 - 97
SeqNo PDBNo AA STRUCTURE BP1 BP2 ACC NOCC VAR ....:....8....:....9....:....0....:....1....:....2....:....3....:....4
1 1 A Y 0 0 263 55 0 YYY
2 2 A A + 0 0 76 98 53 SSSSSSSSSSSSSSSSSSSSASSSSSS
3 3 A E + 0 0 135 98 40 QQQQQQQQQQQQQQQQQQQQDEEEQEQ
4 4 A G > - 0 0 39 98 21 GGGGGGGGGGGGGGGGGGGGGAAAGGG
5 5 A T T 4 S+ 0 0 112 98 8 TTTTTTTTTTTTTTTTTTTTTIIITTT
6 6 A F T >4 S+ 0 0 182 98 12 FFFFFFFFFFFFFFFFFFFFFLLLFFF
7 7 A I T 34 S+ 0 0 89 98 79 TTTTTTTTTTTTTTTTTTTTTAAATST
8 8 A S T 3< + 0 0 43 98 2 SSSSSSSSSSSSSSSSSSSSSSSSSNS
9 9 A D < + 0 0 106 98 0 DDDDDDDDDDDDDDDDDDDDDDDDDDD
10 10 A Y + 0 0 98 98 14 YYYYYYYYYYYYYYYYYYYYYYYYYYY
11 11 A S > + 0 0 79 98 2 SSSSSSSSSSSSSSSSSSSSNSSSSSS
12 12 A I T 4 S+ 0 0 155 98 86 KKKKKKKKKKKKKKKKKKKKKRRRKKK
13 13 A A T > S+ 0 0 38 98 103 YYYYYYYYYYYYYYYYYYYYLSTTYYY
14 14 A M H > S+ 0 0 114 98 15 LLLLLLLLLLLLLLLLLLLLLVMMLLL
15 15 A D H X S+ 0 0 118 98 0 DDDDDDDDDDDDDDDDDDDDDDDDDED
16 16 A K H > S+ 0 0 139 98 74 SSSSSSSSSSSSSSSSSSASDNNNSDS
17 17 A I H X S+ 0 0 106 98 93 RRRRRRRRRRRRRRRRRRKRIMMMRRR
18 18 A H H X S+ 0 0 93 98 64 RRRRRRRRRRRRRRRRRRRRALLLRKR
19 19 A Q H X S+ 0 0 129 98 76 AAAAAAAAAAAAAAAAAAAATKKKAAA
20 20 A Q H X S+ 0 0 91 98 27 QQQQQQQQQQQQQQQQQQQQQKKKQQQ
21 21 A D H X S+ 0 0 88 98 20 DDDDDDDDDDDDDDDDDDDDENNNDDD
22 22 A F H X S+ 0 0 111 98 0 FFFFFFFFFFFFFFFFFFFFFFFFFFF
23 23 A V H X S+ 0 0 47 98 1 VVVVVVVVVVVVVVVVVVVVLVVVVVV
24 24 A N H X S+ 0 0 87 98 61 QQQQQQQQQQQQQQQQQQEQKDEEQRQ
25 25 A W H X S+ 0 0 147 98 2 WWWWWWWWWWWWWWWWWWWWWWWWWWW
26 26 A L H < S+ 0 0 79 98 0 LLLLLLLLLLLLLLLLLLLLLLLLLLL
27 27 A L H >X S+ 0 0 90 98 11 MMMMMMMMMMMMMMMMMMMMILLLMMM
28 28 A A H 3< S+ 0 0 47 98 66 NNNNNNNNNNNNNNNNNNTNNAAANSN
29 29 A Q T 3< S+ 0 0 140 98 88 TTTNNTTTTTTTTTTTTTSTQRRRSNT
30 30 A K T <4 S- 0 0 154 98 18 KKKKKKKKKKKKKKKKKKKKKRRRKKK
31 31 A G < - 0 0 33 98 98 RRRRRRRRRRRRRRRRRRRRVEEERRR
32 32 A K + 0 0 178 98 59 NNNNNNNNNNNNNNNNNNTNTKKKSSN
33 33 A K + 0 0 157 98 29 RRRRRRRRRRRRRRRRRRDRQKKKGGK
34 34 A N + 0 0 127 98 49 NNNNNNNNNNNNNNNNNNGNRSSSGAI
35 35 A D > - 0 0 89 94 47 NNNNNNNNNNNNNNNNNNDNDDEEIDQ
36 36 A W T 3 S- 0 0 214 41 55 SKS
37 37 A K T 3 - 0 0 164 41 35 KRK
38 38 A H < - 0 0 102 41 30 RHD
39 39 A N S S+ 0 0 109 40 26 N R
40 40 A I S S- 0 0 142 40 28 V M
41 41 A T 0 0 107 39 33 E
42 42 A Q 0 0 219 39 33 K
## SEQUENCE PROFILE AND ENTROPY
SeqNo PDBNo V L I M F W Y G A P S T C H R K Q E N D NOCC NDEL NINS ENTROPY RELENT WEIGHT
1 1 A 0 0 0 0 0 0 100 0 0 0 0 0 0 0 0 0 0 0 0 0 55 0 0 0.000 0 1.00
2 2 A 0 0 0 0 0 0 0 0 49 0 51 0 0 0 0 0 0 0 0 0 98 0 0 0.693 23 0.46
3 3 A 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 42 57 0 1 98 0 0 0.731 24 0.60
4 4 A 0 0 0 0 0 0 0 87 8 0 5 0 0 0 0 0 0 0 0 0 98 0 0 0.480 16 0.78
5 5 A 0 0 3 0 0 0 0 0 0 0 0 97 0 0 0 0 0 0 0 0 98 0 0 0.137 4 0.92
6 6 A 0 8 5 0 87 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 98 0 0 0.480 16 0.87
7 7 A 0 0 43 0 0 0 0 0 13 0 1 43 0 0 0 0 0 0 0 0 98 0 0 1.041 34 0.20
8 8 A 0 0 0 0 0 0 0 0 0 0 99 0 0 0 0 0 0 0 1 0 98 0 0 0.057 1 0.98
9 9 A 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 100 98 0 0 0.000 0 1.00
10 10 A 0 0 4 1 0 0 95 0 0 0 0 0 0 0 0 0 0 0 0 0 98 0 0 0.227 7 0.85
11 11 A 0 0 0 0 0 0 0 0 0 0 99 0 0 0 0 0 0 0 1 0 98 0 0 0.057 1 0.97
12 12 A 0 0 43 0 0 0 0 0 0 0 0 0 0 0 8 49 0 0 0 0 98 0 0 0.917 30 0.13
13 13 A 0 1 5 0 0 0 43 0 41 0 1 9 0 0 0 0 0 0 0 0 98 0 0 1.194 39 -0.04
14 14 A 4 45 0 51 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 98 0 0 0.833 27 0.84
15 15 A 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 99 98 0 0 0.057 1 0.99
16 16 A 0 0 0 0 0 0 0 0 1 0 45 1 0 1 0 43 0 0 7 2 98 0 0 1.131 37 0.25
17 17 A 1 0 44 12 0 0 0 0 0 0 0 0 0 0 42 1 0 0 0 0 98 0 0 1.077 35 0.06
18 18 A 5 8 0 2 0 0 0 0 1 0 0 0 0 13 69 1 0 0 0 0 98 0 0 1.051 35 0.36
19 19 A 0 0 0 0 0 0 0 0 43 0 1 1 0 0 0 7 48 0 0 0 98 0 0 0.998 33 0.23
20 20 A 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 13 87 0 0 0 98 0 0 0.391 13 0.72
21 21 A 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 13 86 98 0 0 0.447 14 0.79
22 22 A 0 0 0 0 100 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 98 0 0 0.000 0 1.00
23 23 A 99 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 98 0 0 0.057 1 0.99
24 24 A 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 40 9 46 3 98 0 0 1.144 38 0.38
25 25 A 0 0 0 0 5 95 0 0 0 0 0 0 0 0 0 0 0 0 0 0 98 0 0 0.202 6 0.98
26 26 A 0 100 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 98 0 0 0.000 0 1.00
27 27 A 0 56 1 43 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 98 0 0 0.734 24 0.88
28 28 A 0 0 0 0 0 0 0 0 49 0 6 2 0 0 0 0 0 0 43 0 98 0 0 0.963 32 0.33
29 29 A 0 0 0 0 0 0 0 0 0 0 3 37 0 0 8 0 49 0 3 0 98 0 0 1.135 37 0.11
30 30 A 0 0 0 0 0 0 0 0 0 0 0 0 0 0 15 85 0 0 0 0 98 0 0 0.428 14 0.82
31 31 A 1 0 0 0 0 0 0 43 0 0 0 0 0 0 43 0 0 13 0 0 98 0 0 1.041 34 0.02
32 32 A 0 0 0 0 0 0 0 0 0 0 2 2 0 0 1 55 0 0 40 0 98 0 0 0.901 30 0.40
33 33 A 0 0 0 0 0 0 0 2 0 0 0 0 0 0 23 72 1 0 0 1 98 0 0 0.747 24 0.71
34 34 A 0 0 1 0 0 0 0 4 1 0 26 0 0 0 1 0 0 0 67 0 98 0 0 0.886 29 0.51
35 35 A 0 0 1 0 0 0 0 0 0 0 1 0 0 0 0 0 1 9 41 47 94 0 0 1.075 35 0.53
36 36 A 0 0 0 0 0 93 0 0 0 0 5 0 0 0 0 2 0 0 0 0 41 0 0 0.308 10 0.45
37 37 A 0 0 10 0 0 0 0 0 0 0 2 0 0 0 10 78 0 0 0 0 41 0 0 0.738 24 0.64
38 38 A 0 0 0 0 0 0 0 0 0 0 0 0 0 95 2 0 0 0 0 2 41 0 0 0.229 7 0.69
39 39 A 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3 0 0 0 98 0 40 0 0 0.117 3 0.73
40 40 A 3 8 88 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 40 0 0 0.496 16 0.71
41 41 A 0 0 0 0 0 0 0 0 0 0 0 97 0 0 0 0 0 3 0 0 39 0 0 0.119 3 0.66
42 42 A 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3 95 3 0 0 39 0 0 0.238 7 0.66
## INSERTION LIST
AliNo IPOS JPOS Len Sequence
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