Complet list of 2aqc hssp file
Complete list of 2aqc.hssp file
HSSP HOMOLOGY DERIVED SECONDARY STRUCTURE OF PROTEINS , VERSION 2.0 2011
PDBID 2AQC
THRESHOLD according to: t(L)=(290.15 * L ** -0.562) + 5
REFERENCE Sander C., Schneider R. : Database of homology-derived protein structures. Proteins, 9:56-68 (1991).
CONTACT Maintained at http://www.cmbi.ru.nl/ by Maarten L. Hekkelman
DATE file generated on 2014-05-16
HEADER RNA BINDING PROTEIN 17-AUG-05 2AQC
COMPND MOL_ID: 1; MOLECULE: RIBOSOME BIOGENESIS PROTEIN NOP10; CHAIN: A; ENGI
SOURCE MOL_ID: 1; ORGANISM_SCIENTIFIC: METHANOCALDOCOCCUS JANNASCHII; ORGANIS
AUTHOR T.HAMMA,S.L.REICHOW,G.VARANI,A.R.FERRE-D'AMARE
DBREF 2AQC A 1 60 UNP P81303 NOP10_METJA 1 60
SEQLENGTH 63
NCHAIN 1 chain(s) in 2AQC data set
NALIGN 126
NOTATION : ID: EMBL/SWISSPROT identifier of the aligned (homologous) protein
NOTATION : STRID: if the 3-D structure of the aligned protein is known, then STRID is the Protein Data Bank identifier as taken
NOTATION : from the database reference or DR-line of the EMBL/SWISSPROT entry
NOTATION : %IDE: percentage of residue identity of the alignment
NOTATION : %SIM (%WSIM): (weighted) similarity of the alignment
NOTATION : IFIR/ILAS: first and last residue of the alignment in the test sequence
NOTATION : JFIR/JLAS: first and last residue of the alignment in the alignend protein
NOTATION : LALI: length of the alignment excluding insertions and deletions
NOTATION : NGAP: number of insertions and deletions in the alignment
NOTATION : LGAP: total length of all insertions and deletions
NOTATION : LSEQ2: length of the entire sequence of the aligned protein
NOTATION : ACCNUM: SwissProt accession number
NOTATION : PROTEIN: one-line description of aligned protein
NOTATION : SeqNo,PDBNo,AA,STRUCTURE,BP1,BP2,ACC: sequential and PDB residue numbers, amino acid (lower case = Cys), secondary
NOTATION : structure, bridge partners, solvent exposure as in DSSP (Kabsch and Sander, Biopolymers 22, 2577-2637(1983)
NOTATION : VAR: sequence variability on a scale of 0-100 as derived from the NALIGN alignments
NOTATION : pair of lower case characters (AvaK) in the alignend sequence bracket a point of insertion in this sequence
NOTATION : dots (....) in the alignend sequence indicate points of deletion in this sequence
NOTATION : SEQUENCE PROFILE: relative frequency of an amino acid type at each position. Asx and Glx are in their
NOTATION : acid/amide form in proportion to their database frequencies
NOTATION : NOCC: number of aligned sequences spanning this position (including the test sequence)
NOTATION : NDEL: number of sequences with a deletion in the test protein at this position
NOTATION : NINS: number of sequences with an insertion in the test protein at this position
NOTATION : ENTROPY: entropy measure of sequence variability at this position
NOTATION : RELENT: relative entropy, i.e. entropy normalized to the range 0-100
NOTATION : WEIGHT: conservation weight
## PROTEINS : identifier and alignment statistics
NR. ID STRID %IDE %WSIM IFIR ILAS JFIR JLAS LALI NGAP LGAP LSEQ2 ACCNUM PROTEIN
1 : NOP10_METJA 2APO 1.00 1.00 4 63 1 60 60 0 0 60 P81303 Ribosome biogenesis protein Nop10 OS=Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440) GN=nop10 PE=1 SV=1
2 : D3S4A9_METSF 0.98 0.98 9 61 1 53 53 0 0 55 D3S4A9 Ribosome biogenesis protein Nop10 OS=Methanocaldococcus sp. (strain FS406-22) GN=nop10 PE=3 SV=1
3 : C7P7V5_METFA 0.92 0.96 9 60 1 52 52 0 0 53 C7P7V5 Ribosome biogenesis protein Nop10 OS=Methanocaldococcus fervens (strain DSM 4213 / JCM 157852 / AG86) GN=nop10 PE=3 SV=1
4 : F6BDG8_METIK 0.83 0.94 9 60 1 52 52 0 0 52 F6BDG8 Ribosome biogenesis protein Nop10 OS=Methanotorris igneus (strain DSM 5666 / JCM 11834 / Kol 5) GN=nop10 PE=3 SV=1
5 : H1KWA9_9EURY 0.80 0.93 7 60 1 54 54 0 0 54 H1KWA9 Ribosome biogenesis protein Nop10 OS=Methanotorris formicicus Mc-S-70 GN=nop10 PE=3 SV=1
6 : N6VZY4_9EURY 0.78 0.91 7 60 1 54 54 0 0 56 N6VZY4 Ribosome biogenesis protein Nop10 OS=Methanocaldococcus villosus KIN24-T80 GN=nop10 PE=3 SV=1
7 : C9RHK3_METVM 0.77 0.91 7 59 1 53 53 0 0 57 C9RHK3 Ribosome biogenesis protein Nop10 OS=Methanocaldococcus vulcanius (strain ATCC 700851 / DSM 12094 / M7) GN=nop10 PE=3 SV=1
8 : D5VRZ2_METIM 0.75 0.85 7 59 1 53 53 0 0 63 D5VRZ2 Ribosome biogenesis protein Nop10 OS=Methanocaldococcus infernus (strain DSM 11812 / JCM 15783 / ME) GN=nop10 PE=3 SV=1
9 : H3ZPM9_THELN 0.67 0.75 5 56 1 52 52 0 0 59 H3ZPM9 Ribosome biogenesis protein Nop10 OS=Thermococcus litoralis (strain ATCC 51850 / DSM 5473 / JCM 8560 / NS-C) GN=nop10 PE=3 SV=1
10 : NOP10_METM6 0.67 0.82 7 55 1 49 49 0 0 51 A9A8V7 Ribosome biogenesis protein Nop10 OS=Methanococcus maripaludis (strain C6 / ATCC BAA-1332) GN=nop10 PE=3 SV=1
11 : NOP10_METM7 0.67 0.82 7 55 1 49 49 0 0 51 A6VHX2 Ribosome biogenesis protein Nop10 OS=Methanococcus maripaludis (strain C7 / ATCC BAA-1331) GN=nop10 PE=3 SV=1
12 : G0H466_METMI 0.65 0.82 7 55 1 49 49 0 0 51 G0H466 Ribosome biogenesis protein Nop10 OS=Methanococcus maripaludis X1 GN=nop10 PE=3 SV=1
13 : NOP10_METM5 0.65 0.82 7 55 1 49 49 0 0 51 A4G0L3 Ribosome biogenesis protein Nop10 OS=Methanococcus maripaludis (strain C5 / ATCC BAA-1333) GN=nop10 PE=3 SV=1
14 : NOP10_METMP 0.65 0.82 7 55 1 49 49 0 0 51 Q6LWK3 Ribosome biogenesis protein Nop10 OS=Methanococcus maripaludis (strain S2 / LL) GN=nop10 PE=3 SV=1
15 : NOP10_METVS 0.65 0.79 7 58 1 52 52 0 0 52 A6UQY9 Ribosome biogenesis protein Nop10 OS=Methanococcus vannielii (strain SB / ATCC 35089 / DSM 1224) GN=nop10 PE=3 SV=1
16 : D2RGK8_ARCPA 0.63 0.83 5 56 1 52 52 0 0 66 D2RGK8 Ribosome biogenesis protein Nop10 OS=Archaeoglobus profundus (strain DSM 5631 / JCM 9629 / NBRC 100127 / Av18) GN=nop10 PE=3 SV=1
17 : L0HNF7_ACIS0 0.63 0.81 5 56 1 52 52 0 0 60 L0HNF7 Ribosome biogenesis protein Nop10 OS=Aciduliprofundum sp. (strain MAR08-339) GN=nop10 PE=3 SV=1
18 : NOP10_META3 0.63 0.82 7 57 1 50 51 1 1 51 A6UUW5 Ribosome biogenesis protein Nop10 OS=Methanococcus aeolicus (strain Nankai-3 / ATCC BAA-1280) GN=nop10 PE=3 SV=1
19 : NOP10_THESM 0.63 0.75 5 55 1 51 51 0 0 59 C6A1Z6 Ribosome biogenesis protein Nop10 OS=Thermococcus sibiricus (strain MM 739 / DSM 12597) GN=nop10 PE=3 SV=1
20 : B5IFN1_ACIB4 0.62 0.83 5 56 1 52 52 0 0 60 B5IFN1 Ribosome biogenesis protein Nop10 OS=Aciduliprofundum boonei (strain DSM 19572 / T469) GN=nop10 PE=3 SV=1
21 : F2KT11_ARCVS 0.60 0.79 5 56 1 52 52 0 0 66 F2KT11 Ribosome biogenesis protein Nop10 OS=Archaeoglobus veneficus (strain DSM 11195 / SNP6) GN=nop10 PE=3 SV=1
22 : E3GW55_METFV 0.59 0.76 7 55 1 49 49 0 0 57 E3GW55 Ribosome biogenesis protein Nop10 OS=Methanothermus fervidus (strain ATCC 43054 / DSM 2088 / JCM 10308 / V24 S) GN=nop10 PE=3 SV=1
23 : F4HK64_PYRSN 0.58 0.71 5 63 1 59 59 0 0 60 F4HK64 Ribosome biogenesis protein Nop10 OS=Pyrococcus sp. (strain NA2) GN=nop10 PE=3 SV=1
24 : I3RDV4_9EURY 0.58 0.71 5 63 1 59 59 0 0 60 I3RDV4 Ribosome biogenesis protein Nop10 OS=Pyrococcus sp. ST04 GN=nop10 PE=3 SV=1
25 : NOP10_ARCFU 0.58 0.77 5 56 1 52 52 0 0 59 O29724 Ribosome biogenesis protein Nop10 OS=Archaeoglobus fulgidus (strain ATCC 49558 / VC-16 / DSM 4304 / JCM 9628 / NBRC 100126) GN=nop10 PE=3 SV=1
26 : NOP10_PYRAB 2AUS 0.58 0.69 5 63 1 59 59 0 0 60 Q9V0E3 Ribosome biogenesis protein Nop10 OS=Pyrococcus abyssi (strain GE5 / Orsay) GN=nop10 PE=1 SV=1
27 : F0LJ08_THEBM 0.57 0.69 5 62 1 58 58 0 0 60 F0LJ08 Ribosome biogenesis protein Nop10 OS=Thermococcus barophilus (strain DSM 11836 / MP) GN=nop10 PE=3 SV=1
28 : W0I1F1_9EURY 0.57 0.69 5 62 1 58 58 0 0 60 W0I1F1 Ribosome biogenesis protein Nop10 OS=Thermococcus sp. ES1 GN=nop10 PE=3 SV=1
29 : NOP10_METTH 0.56 0.72 7 63 1 57 57 0 0 59 O27362 Ribosome biogenesis protein Nop10 OS=Methanothermobacter thermautotrophicus (strain ATCC 29096 / DSM 1053 / JCM 10044 / NBRC 100330 / Delta H) GN=nop10 PE=3 SV=1
30 : A0B683_METTP 0.55 0.71 4 52 1 49 49 0 0 60 A0B683 Ribosome biogenesis protein Nop10 OS=Methanosaeta thermophila (strain DSM 6194 / PT) GN=nop10 PE=3 SV=1
31 : D2PJK2_SULID 0.55 0.75 5 57 1 53 53 0 0 56 D2PJK2 Ribosome biogenesis protein Nop10 OS=Sulfolobus islandicus (strain L.D.8.5 / Lassen #2) GN=nop10 PE=3 SV=1
32 : D3DYW0_METRM 0.55 0.73 5 60 1 56 56 0 0 56 D3DYW0 Ribosome biogenesis protein Nop10 OS=Methanobrevibacter ruminantium (strain ATCC 35063 / DSM 1093 / JCM 13430 / M1) GN=nop10 PE=3 SV=1
33 : F0NGU3_SULIR 0.55 0.75 5 57 1 53 53 0 0 56 F0NGU3 Ribosome biogenesis protein Nop10 OS=Sulfolobus islandicus (strain REY15A) GN=nop10 PE=3 SV=1
34 : F0NK85_SULIH 0.55 0.75 5 57 1 53 53 0 0 56 F0NK85 Ribosome biogenesis protein Nop10 OS=Sulfolobus islandicus (strain HVE10/4) GN=nop10 PE=3 SV=1
35 : M9UDA2_SULIS 0.55 0.75 5 57 1 53 53 0 0 56 M9UDA2 Ribosome biogenesis protein Nop10 OS=Sulfolobus islandicus LAL14/1 GN=nop10 PE=3 SV=1
36 : NOP10_SULIA 0.55 0.75 5 57 1 53 53 0 0 56 C3N544 Ribosome biogenesis protein Nop10 OS=Sulfolobus islandicus (strain M.16.27) GN=nop10 PE=3 SV=1
37 : NOP10_SULIK 0.55 0.75 5 57 1 53 53 0 0 56 C4KGP7 Ribosome biogenesis protein Nop10 OS=Sulfolobus islandicus (strain M.16.4 / Kamchatka #3) GN=nop10 PE=3 SV=1
38 : NOP10_SULIL 0.55 0.75 5 57 1 53 53 0 0 56 C3MPG2 Ribosome biogenesis protein Nop10 OS=Sulfolobus islandicus (strain L.S.2.15 / Lassen #1) GN=nop10 PE=3 SV=1
39 : NOP10_SULIM 0.55 0.75 5 57 1 53 53 0 0 56 C3MYF0 Ribosome biogenesis protein Nop10 OS=Sulfolobus islandicus (strain M.14.25 / Kamchatka #1) GN=nop10 PE=3 SV=1
40 : NOP10_SULIN 0.55 0.75 5 57 1 53 53 0 0 56 C3NI09 Ribosome biogenesis protein Nop10 OS=Sulfolobus islandicus (strain Y.N.15.51 / Yellowstone #2) GN=nop10 PE=3 SV=1
41 : NOP10_SULIY 0.55 0.75 5 57 1 53 53 0 0 56 C3NDP2 Ribosome biogenesis protein Nop10 OS=Sulfolobus islandicus (strain Y.G.57.14 / Yellowstone #1) GN=nop10 PE=3 SV=1
42 : NOP10_THEON 0.55 0.64 5 62 1 58 58 0 0 58 B6YT36 Ribosome biogenesis protein Nop10 OS=Thermococcus onnurineus (strain NA1) GN=nop10 PE=3 SV=1
43 : F0T7X5_METSL 0.54 0.65 5 56 1 51 52 1 1 54 F0T7X5 Ribosome biogenesis protein Nop10 OS=Methanobacterium sp. (strain AL-21) GN=nop10 PE=3 SV=1
44 : G0HP12_THES4 0.54 0.68 5 63 1 59 59 0 0 59 G0HP12 Ribosome biogenesis protein Nop10 OS=Thermococcus sp. (strain CGMCC 1.5172 / 4557) GN=nop10 PE=3 SV=1
45 : I6V1J1_9EURY 0.54 0.69 5 63 1 59 59 0 0 60 I6V1J1 Ribosome biogenesis protein Nop10 OS=Pyrococcus furiosus COM1 GN=nop10 PE=3 SV=1
46 : NOP10_PYRFU 2HVY 0.54 0.69 5 63 1 59 59 0 0 60 Q8U1R4 Ribosome biogenesis protein Nop10 OS=Pyrococcus furiosus (strain ATCC 43587 / DSM 3638 / JCM 8422 / Vc1) GN=nop10 PE=1 SV=1
47 : D9PYG4_METTM 0.53 0.71 7 57 1 51 51 0 0 54 D9PYG4 Ribosome biogenesis protein Nop10 OS=Methanothermobacter marburgensis (strain DSM 2133 / 14651 / NBRC 100331 / OCM 82 / Marburg) GN=nop10 PE=3 SV=1
48 : G7WK07_METH6 0.53 0.73 5 55 1 51 51 0 0 53 G7WK07 Ribosome biogenesis protein Nop10 OS=Methanosaeta harundinacea (strain 6Ac) GN=nop10 PE=3 SV=1
49 : I3ZSI5_9EURY 0.53 0.68 5 63 1 59 59 0 0 59 I3ZSI5 Ribosome biogenesis protein Nop10 OS=Thermococcus sp. CL1 GN=nop10 PE=3 SV=1
50 : D7EBH0_METEZ 0.52 0.72 5 54 1 50 50 0 0 55 D7EBH0 Ribosome biogenesis protein Nop10 OS=Methanohalobium evestigatum (strain DSM 3721 / OCM 161 / Z-7303) GN=nop10 PE=3 SV=1
51 : NOP10_THEGJ 0.52 0.67 5 62 1 58 58 0 0 59 C5A500 Ribosome biogenesis protein Nop10 OS=Thermococcus gammatolerans (strain DSM 15229 / JCM 11827 / EJ3) GN=nop10 PE=3 SV=1
52 : NOP10_THEKO 0.52 0.69 5 62 1 58 58 0 0 59 Q5JE48 Ribosome biogenesis protein Nop10 OS=Thermococcus kodakaraensis (strain ATCC BAA-918 / JCM 12380 / KOD1) GN=nop10 PE=3 SV=1
53 : B9AFB3_METSM 0.51 0.75 5 59 1 55 55 0 0 58 B9AFB3 Ribosome biogenesis protein Nop10 OS=Methanobrevibacter smithii DSM 2375 GN=nop10 PE=3 SV=1
54 : D2ZPA2_METSM 0.51 0.73 5 59 1 55 55 0 0 58 D2ZPA2 Ribosome biogenesis protein Nop10 OS=Methanobrevibacter smithii DSM 2374 GN=nop10 PE=3 SV=1
55 : D5E7R4_METMS 0.51 0.71 5 55 1 51 51 0 0 51 D5E7R4 Ribosome biogenesis protein Nop10 OS=Methanohalophilus mahii (strain ATCC 35705 / DSM 5219 / SLP) GN=nop10 PE=3 SV=1
56 : F8AIR6_PYRYC 0.51 0.68 5 63 1 59 59 0 0 62 F8AIR6 Ribosome biogenesis protein Nop10 OS=Pyrococcus yayanosii (strain CH1 / JCM 16557) GN=nop10 PE=3 SV=1
57 : NOP10_METS3 0.51 0.75 5 59 1 55 55 0 0 58 A5UMA9 Ribosome biogenesis protein Nop10 OS=Methanobrevibacter smithii (strain PS / ATCC 35061 / DSM 861) GN=nop10 PE=3 SV=1
58 : R7PWX0_9EURY 0.51 0.75 5 59 1 55 55 0 0 58 R7PWX0 Ribosome biogenesis protein Nop10 OS=Methanobrevibacter smithii CAG:186 GN=nop10 PE=3 SV=1
59 : A8M8W7_CALMQ 0.50 0.65 4 56 1 54 54 1 1 76 A8M8W7 Nucleolar RNA-binding protein Nop10p OS=Caldivirga maquilingensis (strain ATCC 700844 / DSM 13496 / JCM 10307 / IC-167) GN=Cmaq_1360 PE=3 SV=1
60 : B7R068_9EURY 0.50 0.64 5 62 1 58 58 0 0 59 B7R068 Ribosome biogenesis protein Nop10 OS=Thermococcus sp. AM4 GN=nop10 PE=3 SV=1
61 : D0KU13_SULS9 0.50 0.73 5 56 1 52 52 0 0 56 D0KU13 Ribosome biogenesis protein Nop10 OS=Sulfolobus solfataricus (strain 98/2) GN=nop10 PE=3 SV=1
62 : D1YYT4_METPS 0.50 0.74 5 54 1 50 50 0 0 50 D1YYT4 Putative ribosome biogenesis protein Nop10 OS=Methanocella paludicola (strain DSM 17711 / JCM 13418 / NBRC 101707 / SANAE) GN=MCP_1534 PE=3 SV=1
63 : D3RX37_FERPA 0.50 0.73 5 56 1 52 52 0 0 62 D3RX37 Ribosome biogenesis protein Nop10 OS=Ferroglobus placidus (strain DSM 10642 / AEDII12DO) GN=nop10 PE=3 SV=1
64 : K2R6D6_METFO 0.50 0.71 5 56 1 52 52 0 0 56 K2R6D6 Ribosome biogenesis protein Nop10 OS=Methanobacterium formicicum DSM 3637 GN=nop10 PE=3 SV=1
65 : NOP10_SULSO 0.50 0.73 5 56 1 52 52 0 0 56 Q97Z78 Ribosome biogenesis protein Nop10 OS=Sulfolobus solfataricus (strain ATCC 35092 / DSM 1617 / JCM 11322 / P2) GN=nop10 PE=3 SV=1
66 : D5TZN0_THEAM 0.49 0.65 5 54 1 51 51 1 1 67 D5TZN0 Ribosome biogenesis protein Nop10 OS=Thermosphaera aggregans (strain DSM 11486 / M11TL) GN=nop10 PE=3 SV=1
67 : F6D4Z9_METSW 0.49 0.68 5 61 1 57 57 0 0 60 F6D4Z9 Ribosome biogenesis protein Nop10 OS=Methanobacterium sp. (strain SWAN-1) GN=nop10 PE=3 SV=1
68 : H1YWN0_9EURY 0.49 0.71 5 55 1 51 51 0 0 56 H1YWN0 Ribosome biogenesis protein Nop10 (Precursor) OS=Methanoplanus limicola DSM 2279 GN=nop10 PE=3 SV=1
69 : NOP10_IGNH4 0.49 0.69 5 53 1 49 49 0 0 64 A8AAJ4 Ribosome biogenesis protein Nop10 OS=Ignicoccus hospitalis (strain KIN4/I / DSM 18386 / JCM 14125) GN=nop10 PE=3 SV=1
70 : NOP10_METBF 0.49 0.73 5 55 1 51 51 0 0 51 Q46C79 Ribosome biogenesis protein Nop10 OS=Methanosarcina barkeri (strain Fusaro / DSM 804) GN=nop10 PE=3 SV=1
71 : NOP10_SULTO 0.49 0.72 5 57 1 53 53 0 0 56 Q973G1 Ribosome biogenesis protein Nop10 OS=Sulfolobus tokodaii (strain DSM 16993 / JCM 10545 / NBRC 100140 / 7) GN=nop10 PE=3 SV=1
72 : R9SNC3_9EURY 0.49 0.69 5 55 1 51 51 0 0 53 R9SNC3 Ribosome biogenesis protein Nop10 OS=Methanobrevibacter sp. AbM4 GN=nop10 PE=3 SV=1
73 : K6SZK6_9EURY 0.48 0.69 5 56 1 52 52 0 0 56 K6SZK6 Ribosome biogenesis protein Nop10 OS=Methanobacterium sp. Maddingley MBC34 GN=nop10 PE=3 SV=1
74 : W8NZD6_9EURY 0.48 0.66 5 62 1 58 58 0 0 59 W8NZD6 Putative Zn-ribbon RNA-binding protein OS=Thermococcus nautili GN=BD01_0170 PE=4 SV=1
75 : E1RI58_METP4 0.47 0.63 5 55 1 51 51 0 0 51 E1RI58 Ribosome biogenesis protein Nop10 OS=Methanoplanus petrolearius (strain DSM 11571 / OCM 486 / SEBR 4847) GN=nop10 PE=3 SV=1
76 : M1I511_9CREN 0.47 0.68 5 57 1 53 53 0 0 56 M1I511 Ribosome biogenesis protein Nop10 OS=Sulfolobus acidocaldarius N8 GN=nop10 PE=3 SV=1
77 : M1ICR2_9CREN 0.47 0.68 5 57 1 53 53 0 0 56 M1ICR2 Ribosome biogenesis protein Nop10 OS=Sulfolobus acidocaldarius Ron12/I GN=nop10 PE=3 SV=1
78 : M1Q4H3_METMZ 0.47 0.75 5 55 1 51 51 0 0 51 M1Q4H3 Ribosome biogenesis protein Nop10 OS=Methanosarcina mazei Tuc01 GN=nop10 PE=3 SV=1
79 : NOP10_METST 0.47 0.67 5 59 1 55 55 0 0 55 Q2NE61 Ribosome biogenesis protein Nop10 OS=Methanosphaera stadtmanae (strain ATCC 43021 / DSM 3091 / JCM 11832 / MCB-3) GN=nop10 PE=3 SV=1
80 : V9S688_9CREN 0.47 0.72 5 57 1 53 53 0 0 56 V9S688 Ribosome biogenesis protein Nop10 OS=Sulfolobus acidocaldarius SUSAZ GN=nop10 PE=3 SV=1
81 : W7KWT9_9CREN 0.47 0.69 5 55 1 51 51 0 0 56 W7KWT9 Ribosome biogenesis protein Nop10 OS=Sulfolobales archaeon AZ1 GN=nop10 PE=3 SV=1
82 : W9DSJ3_METTI 0.47 0.69 5 55 1 51 51 0 0 54 W9DSJ3 Putative Zn-ribbon RNA-binding protein OS=Methanolobus tindarius DSM 2278 GN=MettiDRAFT_2033 PE=4 SV=1
83 : NOP10_METBU 0.46 0.70 5 54 1 50 50 0 0 56 Q12W64 Ribosome biogenesis protein Nop10 OS=Methanococcoides burtonii (strain DSM 6242 / NBRC 107633 / OCM 468 / ACE-M) GN=nop10 PE=3 SV=1
84 : U6EF27_9EURY 0.46 0.69 5 56 1 52 52 0 0 56 U6EF27 Ribosome biogenesis protein Nop10 OS=Methanobacterium sp. MB1 GN=nop10 PE=3 SV=1
85 : F4B3U9_ACIHW 0.45 0.68 5 57 1 53 53 0 0 56 F4B3U9 Ribosome biogenesis protein Nop10 OS=Acidianus hospitalis (strain W1) GN=nop10 PE=3 SV=1
86 : F4G043_METCR 0.45 0.71 5 55 1 50 51 1 1 53 F4G043 Ribosome biogenesis protein Nop10 OS=Metallosphaera cuprina (strain Ar-4) GN=nop10 PE=3 SV=1
87 : NOP10_METAC 0.45 0.73 5 55 1 51 51 0 0 51 Q8TT00 Ribosome biogenesis protein Nop10 OS=Methanosarcina acetivorans (strain ATCC 35395 / DSM 2834 / JCM 12185 / C2A) GN=nop10 PE=3 SV=1
88 : NOP10_METKA 0.45 0.64 5 56 1 53 53 1 1 66 Q8TY85 Ribosome biogenesis protein Nop10 OS=Methanopyrus kandleri (strain AV19 / DSM 6324 / JCM 9639 / NBRC 100938) GN=nop10 PE=3 SV=1
89 : X0V6T2_9ZZZZ 0.45 0.71 5 55 1 51 51 0 0 57 X0V6T2 Marine sediment metagenome DNA, contig: S01H1_S09597 (Fragment) OS=marine sediment metagenome GN=S01H1_38691 PE=4 SV=1
90 : F2L1H9_THEU7 0.44 0.68 5 53 1 50 50 1 1 69 F2L1H9 Ribosome biogenesis protein Nop10 OS=Thermoproteus uzoniensis (strain 768-20) GN=nop10 PE=3 SV=1
91 : I0A270_FERFK 0.44 0.60 5 53 5 54 50 1 1 64 I0A270 Ribosome biogenesis protein Nop10 OS=Fervidicoccus fontis (strain DSM 19380 / VKM B-2539 / Kam940) GN=nop10 PE=3 SV=1
92 : L0AAM0_CALLD 0.44 0.60 5 53 1 50 50 1 1 55 L0AAM0 Ribosome biogenesis protein Nop10 OS=Caldisphaera lagunensis (strain DSM 15908 / JCM 11604 / IC-154) GN=nop10 PE=3 SV=1
93 : M1V510_CYAME 0.44 0.67 9 54 3 50 48 1 2 64 M1V510 Box H/ACA snoRNP component Nop10p OS=Cyanidioschyzon merolae strain 10D GN=CYME_CMH198C PE=3 SV=1
94 : Q05E71_AERPE 0.42 0.66 5 56 1 53 53 1 1 58 Q05E71 Ribosome biogenesis protein Nop10 OS=Aeropyrum pernix (strain ATCC 700893 / DSM 11879 / JCM 9820 / NBRC 100138 / K1) GN=nop10 PE=3 SV=1
95 : L0IBR9_HALRX 0.41 0.56 5 54 1 54 54 2 4 58 L0IBR9 Ribosome biogenesis protein Nop10 OS=Halovivax ruber (strain DSM 18193 / JCM 13892 / XH-70) GN=nop10 PE=3 SV=1
96 : M0BS40_9EURY 0.41 0.56 5 54 1 54 54 2 4 58 M0BS40 Ribosome biogenesis protein Nop10 OS=Halovivax asiaticus JCM 14624 GN=nop10 PE=3 SV=1
97 : D6GWX3_9ARCH 0.39 0.57 8 60 3 55 54 2 2 55 D6GWX3 H/ACA RNA-protein complex component Nop10p OS=Candidatus Parvarchaeum acidophilus ARMAN-5 GN=BJBARM5_0994 PE=4 SV=1
98 : D8J681_HALJB 0.39 0.52 5 54 1 56 56 3 6 60 D8J681 Ribosome biogenesis protein Nop10 OS=Halalkalicoccus jeotgali (strain DSM 18796 / CECT 7217 / JCM 14584 / KCTC 4019 / B3) GN=nop10 PE=3 SV=1
99 : F7PII8_9EURY 0.39 0.55 5 54 1 56 56 3 6 60 F7PII8 Ribosome biogenesis protein Nop10 OS=Halorhabdus tiamatea SARL4B GN=nop10 PE=3 SV=1
100 : G0HVC3_HALHT 0.38 0.52 5 54 1 56 56 3 6 60 G0HVC3 Ribosome biogenesis protein Nop10 OS=Haloarcula hispanica (strain ATCC 33960 / DSM 4426 / JCM 8911 / NBRC 102182 / NCIMB 2187 / VKM B-1755) GN=nop10P PE=3 SV=1
101 : M0CT83_9EURY 0.38 0.54 5 54 1 56 56 3 6 60 M0CT83 Ribosome biogenesis protein Nop10 OS=Halosimplex carlsbadense 2-9-1 GN=nop10 PE=3 SV=1
102 : M0JUQ8_9EURY 0.38 0.50 5 54 1 56 56 3 6 60 M0JUQ8 Ribosome biogenesis protein Nop10 OS=Haloarcula sinaiiensis ATCC 33800 GN=nop10 PE=3 SV=1
103 : M0KIF1_9EURY 0.38 0.52 5 54 1 56 56 3 6 60 M0KIF1 Ribosome biogenesis protein Nop10 OS=Haloarcula amylolytica JCM 13557 GN=nop10 PE=3 SV=1
104 : M0KK33_9EURY 0.38 0.50 5 54 1 56 56 3 6 60 M0KK33 Ribosome biogenesis protein Nop10 OS=Haloarcula californiae ATCC 33799 GN=nop10 PE=3 SV=1
105 : M0KQX0_HALAR 0.38 0.50 5 54 1 56 56 3 6 60 M0KQX0 Ribosome biogenesis protein Nop10 OS=Haloarcula argentinensis DSM 12282 GN=nop10 PE=3 SV=1
106 : NOP10_HALMA 0.38 0.50 5 54 1 56 56 3 6 60 Q5UX23 Ribosome biogenesis protein Nop10 OS=Haloarcula marismortui (strain ATCC 43049 / DSM 3752 / JCM 8966 / VKM B-1809) GN=nop10 PE=3 SV=1
107 : U1MY82_9EURY 0.38 0.48 5 54 1 56 56 3 6 60 U1MY82 Ribosome biogenesis protein Nop10 OS=halophilic archaeon J07HX5 GN=nop10 PE=3 SV=1
108 : C7NR39_HALUD 0.36 0.54 5 54 1 56 56 3 6 60 C7NR39 Ribosome biogenesis protein Nop10 OS=Halorhabdus utahensis (strain DSM 12940 / JCM 11049 / AX-2) GN=nop10 PE=3 SV=1
109 : C7P0X1_HALMD 0.36 0.48 5 54 1 56 56 3 6 60 C7P0X1 Ribosome biogenesis protein Nop10 OS=Halomicrobium mukohataei (strain ATCC 700874 / DSM 12286 / JCM 9738 / NCIMB 13541) GN=nop10 PE=3 SV=1
110 : D2EE76_9ARCH 0.36 0.64 9 63 4 58 55 0 0 58 D2EE76 H/ACA RNA-protein complex component Nop10p OS=Candidatus Parvarchaeum acidiphilum ARMAN-4 GN=BJBARM4_0008 PE=4 SV=1
111 : D3SY92_NATMM 0.36 0.48 5 54 1 56 56 3 6 60 D3SY92 Ribosome biogenesis protein Nop10 OS=Natrialba magadii (strain ATCC 43099 / DSM 3394 / NCIMB 2190 / MS3) GN=nop10 PE=3 SV=1
112 : E7QRD3_9EURY 0.36 0.52 5 54 1 56 56 3 6 60 E7QRD3 Ribosome biogenesis protein Nop10 OS=Haladaptatus paucihalophilus DX253 GN=nop10 PE=3 SV=1
113 : I7C114_NATSJ 0.36 0.54 5 54 1 56 56 3 6 59 I7C114 Ribosome biogenesis protein Nop10 OS=Natrinema sp. (strain J7-2) GN=nop10 PE=3 SV=1
114 : L0JUK5_9EURY 0.36 0.52 5 54 1 56 56 3 6 59 L0JUK5 Ribosome biogenesis protein Nop10 OS=Natronococcus occultus SP4 GN=nop10 PE=3 SV=1
115 : L9WS54_9EURY 0.36 0.52 5 54 1 56 56 3 6 59 L9WS54 Ribosome biogenesis protein Nop10 OS=Natronococcus jeotgali DSM 18795 GN=nop10 PE=3 SV=1
116 : L9XF63_9EURY 0.36 0.52 5 54 1 56 56 3 6 59 L9XF63 Ribosome biogenesis protein Nop10 OS=Natronococcus amylolyticus DSM 10524 GN=nop10 PE=3 SV=1
117 : L9YTS3_9EURY 0.36 0.54 5 54 1 56 56 3 6 59 L9YTS3 Ribosome biogenesis protein Nop10 OS=Natrinema gari JCM 14663 GN=nop10 PE=3 SV=1
118 : L9ZQQ7_9EURY 0.36 0.48 5 54 1 56 56 3 6 60 L9ZQQ7 Ribosome biogenesis protein Nop10 OS=Natrialba hulunbeirensis JCM 10989 GN=nop10 PE=3 SV=1
119 : M0A1C5_9EURY 0.36 0.52 5 54 1 56 56 3 6 59 M0A1C5 Ribosome biogenesis protein Nop10 OS=Natrialba taiwanensis DSM 12281 GN=nop10 PE=3 SV=1
120 : M0AQA0_NATA1 0.36 0.50 5 54 1 56 56 3 6 59 M0AQA0 Ribosome biogenesis protein Nop10 OS=Natrialba asiatica (strain ATCC 700177 / DSM 12278 / JCM 9576 / FERM P-10747 / NBRC 102637 / 172P1) GN=nop10 PE=3 SV=1
121 : M0BEH6_9EURY 0.36 0.50 5 54 1 56 56 3 6 59 M0BEH6 Ribosome biogenesis protein Nop10 OS=Natrialba aegyptia DSM 13077 GN=nop10 PE=3 SV=1
122 : M0J036_HALVA 0.36 0.52 5 54 1 56 56 3 6 60 M0J036 Ribosome biogenesis protein Nop10 OS=Haloarcula vallismortis ATCC 29715 GN=nop10 PE=3 SV=1
123 : M0LS92_9EURY 0.36 0.50 5 54 1 56 56 3 6 59 M0LS92 Ribosome biogenesis protein Nop10 OS=Halobiforma lacisalsi AJ5 GN=nop10 PE=3 SV=1
124 : M0LTG9_9EURY 0.36 0.52 5 54 1 56 56 3 6 60 M0LTG9 Ribosome biogenesis protein Nop10 OS=Halococcus hamelinensis 100A6 GN=nop10 PE=3 SV=1
125 : M0N496_9EURY 0.36 0.50 5 54 1 56 56 3 6 60 M0N496 Ribosome biogenesis protein Nop10 OS=Halococcus salifodinae DSM 8989 GN=nop10 PE=3 SV=1
126 : R4W8U9_9EURY 0.36 0.50 5 54 1 56 56 3 6 58 R4W8U9 Ribosome biogenesis protein Nop10 OS=Salinarchaeum sp. Harcht-Bsk1 GN=nop10 PE=3 SV=1
## ALIGNMENTS 1 - 70
SeqNo PDBNo AA STRUCTURE BP1 BP2 ACC NOCC VAR ....:....1....:....2....:....3....:....4....:....5....:....6....:....7
1 -2 A G 0 0 121 1 0
2 -1 A S + 0 0 128 1 0
3 0 A H S S- 0 0 139 1 0
4 1 A M - 0 0 174 4 0 M M M
5 2 A V - 0 0 115 107 4 V M MM MMM MMMMMM VMMMMMMMMMMMMMMMM MMMMMMMMMMMVMMMMMMMMMMM
6 3 A E - 0 0 148 107 48 E R KH RHK RRKRRR RKKKKKKKKKKKRKHRR RHGRHNSGRNNKKKKKKKNKTKG
7 4 A M - 0 0 100 121 85 M MMMMFMMMMMMVTMFTVMFFVFFFMSWMWWWWWWWWWFPFFFMSFYFFMMKFMMSFWTSMWWMRFQ
8 5 A R - 0 0 172 121 68 R RKRKRKRKKKQKLRKLKKRRLRRRKKKKKKKKKKKKKRKRRRKKRKRRKKKRKKVRKKLKKLKHLK
9 6 A M - 0 0 52 127 32 MMMMIIMIIMMMMMMMIMIIMMIIMIIIMIMMMMMMMMMMMIMIIIMIIIIIMMIIMMMIMMIMMMMIMI
10 7 A K E -A 19 0A 29 127 43 KKRKRRRRKKKKKKKRRKKRRKRRRRRRKLKKKKKKKKKKKRKRRRRKRRRRNNLRNNMRRKRMRRKRKR
11 8 A K E -AB 18 32A 53 127 61 KKKKKKKKKKKKKKKKKKKRKKKKKKKKRRKKKKKKKKKKKKKKKKRRKKKKKKKKKKKKKKKRKKRCKK
12 9 A C - 0 0 0 127 0 CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
13 10 A P S S+ 0 0 64 127 67 PPLLLPPEPPPPPPPPPPPPGKPPGPPPREPPPPPPPPPPPPKPPPRRPKPPPPIPPPTPPACSPPMPVK
14 11 A K S S+ 0 0 157 127 65 KKKKKKRRKKKKKKKKKNKKSVKRKKKKSRKVKKKKKKKKKSSSKKSTSQNNDDSEDDREKQESKRSKRN
15 12 A C S S- 0 0 82 127 66 CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCDCDDDDDDDDDCCCCCCCCCCCCCCCCCCCDCCCDCCDCC
16 13 A G + 0 0 30 127 67 GGGGGGEGGGGGGGGGGKGGGGGGGGGGGRNNNNNNNNNNNGGGGGMGGSGGKKGGKKGGNGGKNGRSGG
17 14 A L - 0 0 62 126 75 LTTRRKSRRKKKRKKRTNEATERRRRRRELTITTTTTTTTTRERRRELRRRRIIERIIKRITREIRERRR
18 15 A Y E +A 11 0A 123 127 0 YYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYY
19 16 A T E -A 10 0A 25 127 8 TTTTTTSTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTSTT
20 17 A L S S+ 0 0 114 127 7 LLLLLLLLLLLLLLLLLLLLLLLLLLLLLLFLFFFFFFFFFLLLLLLLLLLLMMLLMMLLFFLLFLLLFL
21 18 A K S S- 0 0 157 127 64 KKKKKKRKKKKKKKKKKNKRKKKKKKKKKKKKKKKKKKKKKKTKKKRKREKKEEQKEErKKNKKKsQSKR
22 19 A E S S+ 0 0 77 127 41 EEEEEDDEDDDDDDEELTEEEDEEEEEEEEDPDDDDDDDDDEDEEEDDEEEEDDEDDDdEDSEDDfDFDE
23 20 A I B S-C 30 0B 63 127 81 IIILFITIIFFFFFYVYITLVKVIRTTTVTIQIIIIIIIIITKIVVVITSIVAATVAAKTTAVHTKVVVI
24 21 A C > - 0 0 0 127 0 CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
25 22 A P T 4 S+ 0 0 100 126 17 PPPPPIPPPSSSSSIPP.PPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPQPPPQPPPPP
26 23 A K T 4 S- 0 0 170 127 87 KKKNNYKVVEGEEEDNKQLKKYIVVVAIHRVNVVVVVVVVVVCVVVRIVYVVQQKVQQYVIKSHIVYVVV
27 24 A C T 4 S- 0 0 78 127 1 CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCGCCCCCCCCCCCCCCCCCCCCCCCCCCC
28 25 A G < + 0 0 50 127 13 GGGGGGRGGNNNNNNGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGNG
29 26 A E - 0 0 78 127 62 EEEEEEEGEEEEEEEEEEEEGGEEEEEEGSSGYSSSSSSSSTEEEEGAEGASGGEAGGGASGGGSSGGGG
30 27 A K B -C 23 0B 116 127 63 KKKKKKKKKKKKKKKKKKKKKEKKRKKKRHKEKKKKKKKKKKVKKKSSKKKEEERKEEQKKKRKKEDSQK
31 28 A T - 0 0 9 127 52 TTTTTTTTTSSSSSATTTTTTVTTTTTTTTTLTTTTTTTTTTGTTTTTTTTTLLTTLLLTTTTITLVTTP
32 29 A V B -B 11 0A 58 126 82 VVVMIFIFKVVVVVGFLIKLYRKKHKKKGTMRMMMMMMMMMK.KKKGSKVKKKKIKKKTKVIIEVVGVTF
33 30 A I - 0 0 50 127 77 IIIVIVIYSTTTTTTMETLEMIVVMVVVVGIVIIIIIIIIIIVVVVVQVNVVVVKVVVNVINMVIVIIVS
34 31 A P S S+ 0 0 40 127 69 PPPPPPPPAVIVVVVPAVAVPPAAPAAAITPIPPPPPPPPPAIAAAVTAPAAIIPAIIPAPPAIPPVAPP
35 32 A K S S+ 0 0 151 127 86 KKKKKKKKHKKKKKKILKHLIRHHIHHHYKHYHHHHHHHHHHYHHHYKHQHHYYSHYYHHHVIYHHYHHN
36 33 A P - 0 0 64 127 0 PPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPP
37 34 A P + 0 0 103 127 47 PPPPPPPPPPPPPPPPPPPPPAPPPPPPPASPSSSSSSSSSPPPPPPAPAPPPPAPPPPPSAPPSPPPPA
38 35 A K S S+ 0 0 187 127 46 KKKKKKKKKKRRRRRKRRKRRRRRRRRRKRRKRRRRRRRRRRKRRRKRRRRRKKRRKKRRRRRRRRKRRR
39 36 A F - 0 0 174 127 1 FFFFFFFFFFFFFFFFFYFFFFFFFFFFFFFFFFFFFFFFFFYFFFFFFFFFFFYFFFYFFYFYFFYFFF
40 37 A S - 0 0 59 127 19 SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
41 38 A L S S- 0 0 160 127 29 LLLLPLLLPPPPPPPPPPPPPPPPIPPPPPPVPPPPPPPPPPPPPPPPPPPPIIPPIIPPPPPPPPPPPP
42 39 A E S S- 0 0 134 127 39 EEEEEEEEEVVVVVVEETEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEAEEEEREEEDEELEEEEEQEK
43 40 A D > + 0 0 82 127 2 DDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDD
44 41 A R T 3 S+ 0 0 220 127 63 RRRRRKRRPKKKKKKPRKPRPKPPPPPPKRKKKKKKKKKKKPKPPPRRPRPPKKPPKKRPKAPKKKKRKP
45 42 A W T 3> S+ 0 0 180 127 26 WWWYYWWWYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYMYYYYYYYYYYY
46 43 A G T X4 S+ 0 0 17 127 36 GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGVGVVVVVVVVVGGGGGGGGGGGGGGGGGWGVGGGVVGGVG
47 44 A K G >4 S+ 0 0 189 127 51 KKKKKKKEEKKKKKKKKKEKRKEEKEEEARKKKKKKKKKKKEKEEEEREKEEKKKEKKREKKKKKMKKKR
48 45 A Y G >4 S+ 0 0 139 127 2 YYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYY
49 46 A R G XX S+ 0 0 158 127 0 RRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRR
50 47 A R G <4 S+ 0 0 207 127 46 RRRRRRRRRRRRRRRRRRRRRRRRRRRRRRIRIIIIIIIIIRRRRRRRRRRRRRRRRRLRIRRRIVRRVR
51 48 A M G <4 S+ 0 0 153 127 85 MMMMMMMKRAAAAAMKMMRMMIRRKRKKKAEQEEEEEEEEERMRRRRARQRRIILRIIMRELEIEKIELM
52 49 A L T <4 + 0 0 82 127 29 LLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLWWLLLSWLLLSLLLLWLALLLMLVAA
53 50 A K < + 0 0 150 126 7 KKKKKKKKKKKKKKKRKKKKRKKKRKKKK KKKKKKKKKKKKKKKKKRKKKKKKKKKKKKKKRKKKKKKK
54 51 A R - 0 0 229 122 32 RRRKKRRRRKKKKKKKKKKKKKRRKRRRR KKKKKKKKKKKRERRRRQRQRRKKRRKKVRKKKKKRKR K
55 52 A A + 0 0 101 87 58 AAASSSEAEAAAAASEESEEEQEEEEEEE GEGGGGGGGGGEQEEEEEE EEEENEEEAEG KQG QN G
56 53 A L - 0 0 144 68 52 LLLLLLLLL LVVI VL LLILLLL VMVVVVVVVVVQLQVVV Q VLAA IAALVI ILI L
57 54 A K + 0 0 187 52 71 KKKKKKKR K K LL LLLY KLKKKKKKKKKL LLLL L LLMM LMM L L
58 55 A N - 0 0 87 35 64 NNNNNCKN K GG GGGS N G GGG G GGNN GNN G K
59 56 A K - 0 0 171 34 75 KKKKKKKK II IIIR K I III L IIKK IKK I S
60 57 A N - 0 0 133 27 72 NNKNNN GG GGGG E V AGG V EG R E G
61 58 A K - 0 0 176 21 72 KK RR RRRS K GRR R VR R V K
62 59 A A 0 0 104 19 80 A KK KRRG R RKK R RR K R
63 60 A E 0 0 237 12 25 E EE E E DEE E E
## ALIGNMENTS 71 - 126
SeqNo PDBNo AA STRUCTURE BP1 BP2 ACC NOCC VAR ....:....8....:....9....:....0....:....1....:....2....:....3....:....4
1 -2 A G 0 0 121 1 0
2 -1 A S + 0 0 128 1 0
3 0 A H S S- 0 0 139 1 0
4 1 A M - 0 0 174 4 0
5 2 A V - 0 0 115 107 4 MMMMMMMMMMMMMMMMMMMMMM MMM MMMMMMMMMMMM MMMMMMMMMMMMMMMM
6 3 A E - 0 0 148 107 48 KKKKSKKGKKKGGKTRGPGRKR QKK KKKKKKKKKKKR KKKKKKKKKKKKKKKK
7 4 A M - 0 0 100 121 85 WMMFKSSQFSWQNLWLQKMSWW WSS SASSSSSSSSSA SSSSSSSSSSSSSSSS
8 5 A R - 0 0 172 121 68 KKKRRKKKQKKKKKL.KRALLL LDDRDDDDDDDDDDDD DNDDDDDDDDDDDAAD
9 6 A M - 0 0 52 127 32 IMMIIIIIMILILMIMILLLMLLLIIIIIIIIIIIIIILIIIIIIIIIIIIIIIII
10 7 A K E -A 19 0A 29 127 43 KHRRRRRRRRRYRRRRRRSRRRMRRRRRRRLHHHHHRRRRRRRRRRRRRRRRRRLH
11 8 A K E -AB 18 32A 53 127 61 KKRKKRRKKRKKKRKRKRRRKKKKIIFVVVVVVVVVVVVFVVVVVVVVVVVVVVVV
12 9 A C - 0 0 0 127 0 CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
13 10 A P S S+ 0 0 64 127 67 PKSPPNNKKNVRTRPPKKPASISRHPRrsasaaaaaassSsssssssssssasaes
14 11 A K S S+ 0 0 157 127 65 KSSNDKKNEKFNQTVENEVKKKKRRRNrrereeeeearaKrnrrrrrrrrrererk
15 12 A C S S- 0 0 82 127 66 DCCCDDDCCDDCCCDDCCCCCCDCSSCEDSSSSSSSSESCEAEDDDEEDDDSESSD
16 13 A G + 0 0 30 127 67 CNKGGYYGGYGGNKGGGGGGKNpGtterreaeeeeetaeNreaaaaarrqrertte
17 14 A L - 0 0 62 126 75 TIERHTTRETTRIETRREDARRgRrr.rrrrrrrrrqrrSrrsrrrsrrrrrrtrr
18 15 A Y E +A 11 0A 123 127 0 YYYYYYYYYYYYYYYYYYYYYYYYyyyyyyyyyyyyyyyYyyyyyyyyyyyyyyyy
19 16 A T E -A 10 0A 25 127 8 TTTTTTTTTTTTTTTTTTTTTTTTSSTTTTTTTTTTTTTTTTTTTTTTSSSTTTTT
20 17 A L S S+ 0 0 114 127 7 LILLLMMLLMFLLLFLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLL
21 18 A K S S- 0 0 157 127 64 KQKKSSSREREEKKQKRqEresQrTTNSGDSDDDDDGDSQSSALSLASSSSGSTSG
22 19 A E S S+ 0 0 77 127 41 DDDESEEEEEEADDEQEdDdgeKdEEKTEDDDDDDDEDEKAADSSSDAEEEDVEED
23 20 A I B S-C 30 0B 63 127 81 IKHTIRRKSRKINHKTKKAVRRLATTTSVTSTTTTTCARITTSTTTSTTTTTDTTA
24 21 A C > - 0 0 0 127 0 CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
25 22 A P T 4 S+ 0 0 100 126 17 PPPPPPPPPPPSPPPPPPSPPPPPPPTPPPPPPPPPPPPKPPPPPPPPPPPPPPPP
26 23 A K T 4 S- 0 0 170 127 87 IKHVVTTVETKKEHKRVHRKYYKVSEKDEEDEEEDEEDDNDKDDDDDDDDDEDEEE
27 24 A C T 4 S- 0 0 78 127 1 CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
28 25 A G < + 0 0 50 127 13 GGGGGGGGNGGGGGNGGGGGGGQGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG
29 26 A E - 0 0 78 127 62 TGGAKEEEVERSEGTRGGGGGGEGAAKAALAAHAAAAASSAAAAAAAAAAASAGGA
30 27 A K B -C 23 0B 116 127 63 PEEKEKKVKKPDSEPQVDNPEQPPDEEEAEEEEEEETSDETEDDDEDDPPPDDSPE
31 28 A T - 0 0 9 127 52 TLLTTTTTTTTTSLTTTLTLLLTVTTTATAAAAAAAAAATTATAAATTTTTAAAAA
32 29 A V B -B 11 0A 58 126 82 INKKFFFLGLVFGEILLEEEFKVAVVEVEVVVVVVVVKVEEVEVEVEEEEEIVVVV
33 30 A I - 0 0 50 127 77 IVVVNIIPVIVRNVVPPVRVVVSVNNINNNNNNNNNNNNINNNNNNNNNNNNNNNN
34 31 A P S S+ 0 0 40 127 69 PIIAAPPAIPPPPIPAAPAPPPAPSSNSASSSSSSSTASNSSSSSSSSSSSSSSSS
35 32 A K S S+ 0 0 151 127 86 HYYHHIIIFIHQLYHHIHGHHHHHAAAAVAAAAAAAAVAAAAAAAAAAAAAAAAAA
36 33 A P - 0 0 64 127 0 PPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPP
37 34 A P + 0 0 103 127 47 APPPPPPAAPPAAPPPAHAPHPAPAAQAAAAAAAAAAAAQAAAAAAAAAAEAAAAA
38 35 A K S S+ 0 0 187 127 46 RKRRRRRRRRRRRRRRRRRKRKRRPPKPPPPPPPPPPPPKPPPPPPPPPPPPPPPP
39 36 A F - 0 0 174 127 1 FYYFYFFFYFFFFYFFFFYYFYFFFFYFFFFFFFFFFFFYFFFFFFFFFFFFFYYF
40 37 A S - 0 0 59 127 19 SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSDSDDDDDDDDNDNSDNNS
41 38 A L S S- 0 0 160 127 29 PIPPPPPPPPPPPPPPPPPPPPPPPPKPPPPPPPPPPPPKPPPPPPPPPPPPPPPP
42 39 A E S S- 0 0 134 127 39 VEEEQVVQQVEQLEEVQEEEENDDDDDEEEEEEEEEAEADEDNEEENEEEEEEEEE
43 40 A D > + 0 0 82 127 2 DDDDDDDDDDDDDDDDDDDDDDDNDDEDDDDDDDDDDDDEDDDDDDDDDDDDDDDD
44 41 A R T 3 S+ 0 0 220 127 63 KKKPAKKPKKKPTKKRPPRKKKKRPPTRHSNSSSSSPPPTPPPASAPPPPPNPPPP
45 42 A W T 3> S+ 0 0 180 127 26 YYYYYYYYYYYYYYYMYYYYYYFFSSVYYYYYYYYYHNYVYYHHHYHYYYYYYHHH
46 43 A G T X4 S+ 0 0 17 127 36 VGGGGVVGGVVGGGVVGGGQAISIGGAGGGGGGGGGGGGAGGGGGGGGGGGGGGGG
47 44 A K G >4 S+ 0 0 189 127 51 KKKEKKKKKKKKKKKKKKRIKEKKKEYEEEEEEEEEEEEYEEKEKEKEEEEEEEEE
48 45 A Y G >4 S+ 0 0 139 127 2 YYYYYYYYYYYYYYYYYYYYYYQYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYY
49 46 A R G XX S+ 0 0 158 127 0 RRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRR
50 47 A R G <4 S+ 0 0 207 127 46 IRRRRIIRRILRRRIIRRRIIYVYRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRR
51 48 A M G <4 S+ 0 0 153 127 85 EKTREEELIEEIIMEILKAKAKTEAAKAASASSSSSAAAKAAAAAAAAAAASSAAR
52 49 A L T <4 + 0 0 82 127 29 ILLWILLALLVASLASALLMILLLLLLLLLLLLLLLLLLILLLLLLLLLLLLLLLA
53 50 A K < + 0 0 150 126 7 KKKRKKKKKKKRKKKRKKKKKKKQKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKR
54 51 A R - 0 0 229 122 32 KEKRDKKKRKKRKKKRKKK KKRRKRRRRRRRRRRRRKRRRRRRRRRRRRRRRR
55 52 A A + 0 0 101 87 58 GEQEDGGGQGGE QGGGRQ K E E
56 53 A L - 0 0 144 68 52 I LV VV QV MI V L E Y
57 54 A K + 0 0 187 52 71 K L KK MK K L L
58 55 A N - 0 0 87 35 64 G E D D
59 56 A K - 0 0 171 34 75 I K K K
60 57 A N - 0 0 133 27 72 E A H
61 58 A K - 0 0 176 21 72 V E
62 59 A A 0 0 104 19 80 R S
63 60 A E 0 0 237 12 25 N
## SEQUENCE PROFILE AND ENTROPY
SeqNo PDBNo V L I M F W Y G A P S T C H R K Q E N D NOCC NDEL NINS ENTROPY RELENT WEIGHT
165534 A 0 0 0 0 0 0 0 100 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0.000 0 1.00
265535 A 0 0 0 0 0 0 0 0 0 0 100 0 0 0 0 0 0 0 0 0 1 0 0 0.000 0 1.00
3 0 A 0 0 0 0 0 0 0 0 0 0 0 0 0 100 0 0 0 0 0 0 1 0 0 0.000 0 1.00
4 1 A 0 0 0 100 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4 0 0 0.000 0 1.00
5 2 A 4 0 0 96 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 107 0 0 0.160 5 0.95
6 3 A 0 0 0 0 0 0 0 7 0 1 2 2 0 5 17 60 1 2 4 0 107 0 0 1.378 45 0.51
7 4 A 2 2 0 21 16 16 1 0 2 1 30 2 0 0 1 2 3 0 1 0 121 1 0 1.954 65 0.15
8 5 A 1 9 0 0 0 0 0 0 2 0 0 0 0 1 21 41 2 0 1 22 121 0 0 1.522 50 0.32
9 6 A 0 7 54 39 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 127 0 0 0.886 29 0.68
10 7 A 0 3 0 2 0 0 1 0 0 0 1 0 0 6 59 25 0 0 3 0 127 0 0 1.201 40 0.57
11 8 A 22 0 2 0 2 0 0 0 0 0 0 0 1 0 13 61 0 0 0 0 127 0 0 1.063 35 0.39
12 9 A 0 0 0 0 0 0 0 0 0 0 0 0 100 0 0 0 0 0 0 0 127 0 0 0.000 0 1.00
13 10 A 2 2 2 1 0 0 0 2 9 45 17 2 1 1 6 7 0 2 2 0 127 0 28 1.878 62 0.32
14 11 A 3 0 0 0 1 0 0 0 2 0 9 2 0 0 20 38 2 11 8 4 127 0 0 1.852 61 0.35
15 12 A 0 0 0 0 0 0 0 0 1 0 11 0 59 0 0 0 0 6 0 24 127 0 0 1.093 36 0.34
16 13 A 0 0 0 1 0 0 2 46 6 1 2 4 1 0 7 7 1 9 13 0 127 1 31 1.817 60 0.32
17 14 A 0 3 7 0 0 0 0 1 2 0 3 17 0 1 48 6 1 10 1 1 126 0 30 1.706 56 0.25
18 15 A 0 0 0 0 0 0 100 0 0 0 0 0 0 0 0 0 0 0 0 0 127 0 0 0.000 0 1.00
19 16 A 0 0 0 0 0 0 0 0 0 0 6 94 0 0 0 0 0 0 0 0 127 0 0 0.213 7 0.91
20 17 A 0 81 1 6 13 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 127 0 0 0.629 20 0.93
21 18 A 0 2 0 0 0 0 0 3 2 0 14 3 0 0 9 46 6 8 2 6 127 0 7 1.802 60 0.35
22 19 A 1 1 0 0 2 0 0 1 3 1 4 2 0 0 0 2 1 41 0 43 127 0 0 1.375 45 0.59
23 20 A 12 2 21 0 5 0 2 0 7 0 5 28 1 2 6 8 1 0 1 1 127 0 0 2.167 72 0.19
24 21 A 0 0 0 0 0 0 0 0 0 0 0 0 100 0 0 0 0 0 0 0 127 1 0 0.000 0 1.00
25 22 A 0 0 2 0 0 0 0 0 0 90 6 1 0 0 0 1 2 0 0 0 126 0 0 0.467 15 0.83
26 23 A 26 1 5 0 0 0 6 1 1 0 2 2 1 4 3 14 4 14 4 13 127 0 0 2.275 75 0.13
27 24 A 0 0 0 0 0 0 0 1 0 0 0 0 99 0 0 0 0 0 0 0 127 0 0 0.046 1 0.99
28 25 A 0 0 0 0 0 0 0 91 0 0 0 0 0 0 1 0 1 0 7 0 127 0 0 0.347 11 0.86
29 26 A 1 1 0 0 0 0 1 24 23 0 14 2 0 1 2 2 0 30 0 0 127 0 0 1.691 56 0.37
30 27 A 2 0 0 0 0 0 0 0 1 8 5 2 0 1 3 44 3 21 1 9 127 0 0 1.744 58 0.36
31 28 A 2 11 1 0 0 0 0 1 17 1 5 63 0 0 0 0 0 0 0 0 127 1 0 1.179 39 0.47
32 29 A 28 5 7 9 7 0 1 5 1 0 1 2 0 1 2 19 0 13 1 0 126 0 0 2.160 72 0.18
33 30 A 30 1 22 3 0 0 1 1 0 2 2 6 0 0 2 1 1 2 28 0 127 0 0 1.817 60 0.22
34 31 A 7 0 10 0 0 0 0 0 22 35 21 2 0 0 0 0 0 0 2 0 127 0 0 1.605 53 0.31
35 32 A 2 2 7 0 1 0 10 1 24 0 1 0 0 35 1 14 2 0 1 0 127 0 0 1.839 61 0.13
36 33 A 0 0 0 0 0 0 0 0 0 100 0 0 0 0 0 0 0 0 0 0 127 0 0 0.000 0 1.00
37 34 A 0 0 0 0 0 0 0 0 35 52 9 0 0 2 0 0 2 1 0 0 127 0 0 1.099 36 0.53
38 35 A 0 0 0 0 0 0 0 0 0 24 0 0 0 0 55 21 0 0 0 0 127 0 0 0.998 33 0.54
39 36 A 0 0 0 0 85 0 15 0 0 0 0 0 0 0 0 0 0 0 0 0 127 0 0 0.422 14 0.98
40 37 A 0 0 0 0 0 0 0 0 0 0 88 0 0 0 0 0 0 0 3 9 127 0 0 0.432 14 0.80
41 38 A 1 6 5 0 0 0 0 0 0 87 0 0 0 0 0 2 0 0 0 0 127 0 0 0.546 18 0.71
42 39 A 9 2 0 0 0 0 0 0 2 0 0 1 0 0 1 1 5 72 2 6 127 0 0 1.126 37 0.60
43 40 A 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 1 98 127 0 0 0.127 4 0.98
44 41 A 0 0 0 0 0 0 0 0 3 35 6 2 0 1 16 36 0 0 2 0 127 0 0 1.487 49 0.37
45 42 A 2 0 0 2 2 6 81 0 0 0 2 0 0 6 0 0 0 0 1 0 127 0 0 0.803 26 0.74
46 43 A 17 0 2 0 0 1 0 77 2 0 1 0 0 0 0 0 1 0 0 0 127 0 0 0.766 25 0.63
47 44 A 0 0 1 1 0 0 2 0 1 0 0 0 0 0 5 55 0 36 0 0 127 0 0 1.020 34 0.49
48 45 A 0 0 0 0 0 0 99 0 0 0 0 0 0 0 0 0 1 0 0 0 127 0 0 0.046 1 0.97
49 46 A 0 0 0 0 0 0 0 0 0 0 0 0 0 0 100 0 0 0 0 0 127 0 0 0.000 0 1.00
50 47 A 2 2 16 0 0 0 2 0 0 0 0 0 0 0 79 0 0 0 0 0 127 0 0 0.699 23 0.53
51 48 A 0 4 9 13 0 0 0 0 24 0 6 2 0 0 13 10 2 17 0 0 127 0 0 2.060 68 0.15
52 49 A 2 80 3 2 0 4 0 0 6 0 3 0 0 0 0 0 0 0 0 0 127 0 0 0.826 27 0.70
53 50 A 0 0 0 0 0 0 0 0 0 0 0 0 0 0 7 92 1 0 0 0 126 0 0 0.303 10 0.92
54 51 A 1 0 0 0 0 0 0 0 0 0 0 0 0 0 50 45 2 2 0 1 122 0 0 0.919 30 0.67
55 52 A 0 0 0 0 0 0 0 25 13 0 6 0 0 0 1 2 9 40 2 1 87 0 0 1.635 54 0.42
56 53 A 34 37 12 3 0 0 1 0 6 0 0 0 0 0 0 0 6 1 0 0 68 0 0 1.547 51 0.48
57 54 A 0 38 0 10 0 0 2 0 0 0 0 0 0 0 2 48 0 0 0 0 52 0 0 1.097 36 0.29
58 55 A 0 0 0 0 0 0 0 43 0 0 3 0 3 0 0 9 0 3 34 6 35 0 0 1.409 47 0.36
59 56 A 0 3 41 0 0 0 0 0 0 0 3 0 0 0 3 50 0 0 0 0 34 0 0 1.023 34 0.24
60 57 A 7 0 0 0 0 0 0 37 7 0 0 0 0 4 4 4 0 15 22 0 27 0 0 1.737 57 0.28
61 58 A 14 0 0 0 0 0 0 5 0 0 5 0 0 0 48 24 0 5 0 0 21 0 0 1.408 46 0.28
62 59 A 0 0 0 0 0 0 0 5 11 0 5 0 0 0 47 32 0 0 0 0 19 0 0 1.265 42 0.19
63 60 A 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 83 8 8 12 0 0 0.566 18 0.75
## INSERTION LIST
AliNo IPOS JPOS Len Sequence
59 19 19 1 rKd
66 18 18 1 sAf
88 18 18 1 qRd
90 18 18 1 rKd
91 18 22 1 eTg
92 18 18 1 sQe
93 9 11 2 pKHg
94 18 18 1 rRd
95 13 13 2 tHDr
95 14 16 2 rPVy
96 13 13 2 tHDr
96 14 16 2 rPVy
97 10 12 1 eAy
98 10 10 2 rEWr
98 13 15 2 rHEr
98 14 18 2 rPVy
99 10 10 2 sAWr
99 13 15 2 rHDr
99 14 18 2 rPVy
100 10 10 2 aAWe
100 13 15 2 eHDr
100 14 18 2 rPVy
101 10 10 2 sAWr
101 13 15 2 aHEr
101 14 18 2 rPRy
102 10 10 2 aVWe
102 13 15 2 eHDr
102 14 18 2 rPVy
103 10 10 2 aAWe
103 13 15 2 eHDr
103 14 18 2 rPVy
104 10 10 2 aVWe
104 13 15 2 eHDr
104 14 18 2 rPVy
105 10 10 2 aAWe
105 13 15 2 eHDr
105 14 18 2 rPVy
106 10 10 2 aVWe
106 13 15 2 eHDr
106 14 18 2 rPVy
107 10 10 2 aAWa
107 13 15 2 tHKq
107 14 18 2 qPVy
108 10 10 2 sAWr
108 13 15 2 aHDr
108 14 18 2 rPVy
109 10 10 2 sEWa
109 13 15 2 eHDr
109 14 18 2 rPVy
111 10 10 2 sEWr
111 13 15 2 rHDr
111 14 18 2 rPRy
112 10 10 2 sAWn
112 13 15 2 eHDr
112 14 18 2 rPVy
113 10 10 2 sAWr
113 13 15 2 aHDs
113 14 18 2 sPIy
114 10 10 2 sAWr
114 13 15 2 aHDr
114 14 18 2 rPVy
115 10 10 2 sAWr
115 13 15 2 aHDr
115 14 18 2 rPVy
116 10 10 2 sAWr
116 13 15 2 aHDr
116 14 18 2 rPVy
117 10 10 2 sAWr
117 13 15 2 aHDs
117 14 18 2 sPIy
118 10 10 2 sAWr
118 13 15 2 rHDr
118 14 18 2 rPRy
119 10 10 2 sAWr
119 13 15 2 rHDr
119 14 18 2 rPRy
120 10 10 2 sAWr
120 13 15 2 qHDr
120 14 18 2 rPRy
121 10 10 2 sAWr
121 13 15 2 rHDr
121 14 18 2 rPRy
122 10 10 2 aVWe
122 13 15 2 eHDr
122 14 18 2 rPEy
123 10 10 2 sAWr
123 13 15 2 rHDr
123 14 18 2 rPVy
124 10 10 2 aDWe
124 13 15 2 tHDt
124 14 18 2 tPVy
125 10 10 2 eAWr
125 13 15 2 tHDr
125 14 18 2 rPVy
126 10 10 2 sAWk
126 13 15 2 eHEr
126 14 18 2 rPVy
//