Complet list of 2ab7 hssp file
Complete list of 2ab7.hssp file
HSSP HOMOLOGY DERIVED SECONDARY STRUCTURE OF PROTEINS , VERSION 2.0 2011
PDBID 2AB7
THRESHOLD according to: t(L)=(290.15 * L ** -0.562) + 5
REFERENCE Sander C., Schneider R. : Database of homology-derived protein structures. Proteins, 9:56-68 (1991).
CONTACT Maintained at http://www.cmbi.ru.nl/ by Maarten L. Hekkelman
DATE file generated on 2014-05-16
HEADER RNA BINDING PROTEIN 14-JUL-05 2AB7
COMPND MOL_ID: 1; MOLECULE: ZNF29G29R; CHAIN: A; FRAGMENT: SINGLE ZINC FINGER
SOURCE MOL_ID: 1; ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; ORGANISM_TAXID: 562;
AUTHOR S.H.MISHRA,C.M.SHELLEY,M.K.DARBY,M.W.GERMANN
DBREF 2AB7 A 1 29 PDB 2AB7 2AB7 1 29
SEQLENGTH 29
NCHAIN 1 chain(s) in 2AB7 data set
NALIGN 100
NOTATION : ID: EMBL/SWISSPROT identifier of the aligned (homologous) protein
NOTATION : STRID: if the 3-D structure of the aligned protein is known, then STRID is the Protein Data Bank identifier as taken
NOTATION : from the database reference or DR-line of the EMBL/SWISSPROT entry
NOTATION : %IDE: percentage of residue identity of the alignment
NOTATION : %SIM (%WSIM): (weighted) similarity of the alignment
NOTATION : IFIR/ILAS: first and last residue of the alignment in the test sequence
NOTATION : JFIR/JLAS: first and last residue of the alignment in the alignend protein
NOTATION : LALI: length of the alignment excluding insertions and deletions
NOTATION : NGAP: number of insertions and deletions in the alignment
NOTATION : LGAP: total length of all insertions and deletions
NOTATION : LSEQ2: length of the entire sequence of the aligned protein
NOTATION : ACCNUM: SwissProt accession number
NOTATION : PROTEIN: one-line description of aligned protein
NOTATION : SeqNo,PDBNo,AA,STRUCTURE,BP1,BP2,ACC: sequential and PDB residue numbers, amino acid (lower case = Cys), secondary
NOTATION : structure, bridge partners, solvent exposure as in DSSP (Kabsch and Sander, Biopolymers 22, 2577-2637(1983)
NOTATION : VAR: sequence variability on a scale of 0-100 as derived from the NALIGN alignments
NOTATION : pair of lower case characters (AvaK) in the alignend sequence bracket a point of insertion in this sequence
NOTATION : dots (....) in the alignend sequence indicate points of deletion in this sequence
NOTATION : SEQUENCE PROFILE: relative frequency of an amino acid type at each position. Asx and Glx are in their
NOTATION : acid/amide form in proportion to their database frequencies
NOTATION : NOCC: number of aligned sequences spanning this position (including the test sequence)
NOTATION : NDEL: number of sequences with a deletion in the test protein at this position
NOTATION : NINS: number of sequences with an insertion in the test protein at this position
NOTATION : ENTROPY: entropy measure of sequence variability at this position
NOTATION : RELENT: relative entropy, i.e. entropy normalized to the range 0-100
NOTATION : WEIGHT: conservation weight
## PROTEINS : identifier and alignment statistics
NR. ID STRID %IDE %WSIM IFIR ILAS JFIR JLAS LALI NGAP LGAP LSEQ2 ACCNUM PROTEIN
1 : G7PX33_MACFA 0.64 0.82 8 29 600 621 22 0 0 678 G7PX33 Zinc finger protein 429 (Fragment) OS=Macaca fascicularis GN=EGM_09508 PE=4 SV=1
2 : A5ATF9_VITVI 0.62 0.73 3 28 90 115 26 0 0 355 A5ATF9 Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_038786 PE=4 SV=1
3 : A9PJC2_9ROSI 0.62 0.73 3 28 110 135 26 0 0 375 A9PJC2 Putative uncharacterized protein OS=Populus trichocarpa x Populus deltoides PE=2 SV=1
4 : B4FEJ7_MAIZE 0.62 0.77 3 28 91 116 26 0 0 354 B4FEJ7 Uncharacterized protein OS=Zea mays PE=2 SV=1
5 : B6TPH8_MAIZE 0.62 0.77 3 28 91 116 26 0 0 354 B6TPH8 Transcription repressor TRM protein OS=Zea mays PE=2 SV=1
6 : B9N0B2_POPTR 0.62 0.73 3 28 111 136 26 0 0 378 B9N0B2 Zinc finger family protein OS=Populus trichocarpa GN=POPTR_0004s23050g PE=4 SV=1
7 : C4J8T8_MAIZE 0.62 0.77 3 28 91 116 26 0 0 349 C4J8T8 Uncharacterized protein OS=Zea mays PE=2 SV=1
8 : C5XU70_SORBI 0.62 0.77 3 28 91 116 26 0 0 348 C5XU70 Putative uncharacterized protein Sb04g022470 OS=Sorghum bicolor GN=Sb04g022470 PE=4 SV=1
9 : D7TGW1_VITVI 0.62 0.73 3 28 106 131 26 0 0 371 D7TGW1 Putative uncharacterized protein OS=Vitis vinifera GN=VIT_12s0035g00660 PE=4 SV=1
10 : D8QY40_SELML 0.62 0.73 3 28 28 53 26 0 0 108 D8QY40 Putative uncharacterized protein (Fragment) OS=Selaginella moellendorffii GN=SELMODRAFT_7895 PE=4 SV=1
11 : F2CZA4_HORVD 0.62 0.73 3 28 91 116 26 0 0 336 F2CZA4 Predicted protein OS=Hordeum vulgare var. distichum PE=2 SV=1
12 : K4BIA7_SOLLC 0.62 0.73 3 28 107 132 26 0 0 382 K4BIA7 Uncharacterized protein OS=Solanum lycopersicum GN=Solyc03g083310.2 PE=4 SV=1
13 : K7U524_MAIZE 0.62 0.77 3 28 67 92 26 0 0 320 K7U524 Yin-yang1 OS=Zea mays GN=ZEAMMB73_845457 PE=4 SV=1
14 : M1AIE2_SOLTU 0.62 0.73 3 28 106 131 26 0 0 377 M1AIE2 Uncharacterized protein OS=Solanum tuberosum GN=PGSC0003DMG400009082 PE=4 SV=1
15 : M5XF12_PRUPE 0.62 0.73 3 28 106 131 26 0 0 374 M5XF12 Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa007287mg PE=4 SV=1
16 : M8A0M7_TRIUA 0.62 0.73 3 28 64 89 26 0 0 372 M8A0M7 Uncharacterized protein OS=Triticum urartu GN=TRIUR3_30934 PE=4 SV=1
17 : M8CEP4_AEGTA 0.62 0.73 3 28 117 142 26 0 0 373 M8CEP4 Putative zinc finger protein OS=Aegilops tauschii GN=F775_26881 PE=4 SV=1
18 : Q9XFG4_MAIZE 0.62 0.77 3 28 45 70 26 0 0 264 Q9XFG4 Putative transcription repressor maize TRM protein OS=Zea mays GN=trm PE=2 SV=1
19 : Q9ZQT8_TOBAC 0.62 0.73 3 28 106 131 26 0 0 371 Q9ZQT8 WREBP-2 protein OS=Nicotiana tabacum GN=WREBP-2 PE=2 SV=1
20 : S8EGC5_9LAMI 0.62 0.73 3 28 109 134 26 0 0 385 S8EGC5 Uncharacterized protein OS=Genlisea aurea GN=M569_03035 PE=4 SV=1
21 : U7E1K0_POPTR 0.62 0.73 3 28 110 135 26 0 0 375 U7E1K0 Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0022s00900g PE=4 SV=1
22 : V7CQL8_PHAVU 0.62 0.73 3 28 106 131 26 0 0 372 V7CQL8 Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_002G248200g PE=4 SV=1
23 : W1NQS9_AMBTC 0.62 0.73 3 28 61 86 26 0 0 325 W1NQS9 Uncharacterized protein OS=Amborella trichopoda GN=AMTR_s00118p00114180 PE=4 SV=1
24 : W5GMP8_WHEAT 0.62 0.73 3 28 145 170 26 0 0 398 W5GMP8 Uncharacterized protein OS=Triticum aestivum PE=4 SV=1
25 : W5H0W0_WHEAT 0.62 0.73 3 28 91 116 26 0 0 344 W5H0W0 Uncharacterized protein OS=Triticum aestivum PE=4 SV=1
26 : W9QYE8_9ROSA 0.62 0.73 3 28 106 131 26 0 0 375 W9QYE8 Putative zinc finger protein OS=Morus notabilis GN=L484_018438 PE=4 SV=1
27 : S7NTQ3_MYOBR 0.59 0.74 2 28 58 82 27 1 2 261 S7NTQ3 Zinc finger protein 664 OS=Myotis brandtii GN=D623_10013049 PE=4 SV=1
28 : B7FLN9_MEDTR 0.58 0.73 3 28 106 131 26 0 0 226 B7FLN9 Putative uncharacterized protein (Fragment) OS=Medicago truncatula PE=2 SV=1
29 : B9SSP5_RICCO 0.58 0.69 3 28 106 131 26 0 0 372 B9SSP5 Nucleic acid binding protein, putative OS=Ricinus communis GN=RCOM_1375410 PE=4 SV=1
30 : C6TF26_SOYBN 0.58 0.73 3 28 106 131 26 0 0 234 C6TF26 Putative uncharacterized protein OS=Glycine max PE=2 SV=1
31 : C6THB4_SOYBN 0.58 0.73 3 28 106 131 26 0 0 371 C6THB4 Putative uncharacterized protein OS=Glycine max PE=2 SV=1
32 : C6TNQ7_SOYBN 0.58 0.73 3 28 106 131 26 0 0 371 C6TNQ7 Putative uncharacterized protein OS=Glycine max PE=2 SV=1
33 : G1S533_NOMLE 0.58 0.75 5 28 383 406 24 0 0 660 G1S533 Uncharacterized protein OS=Nomascus leucogenys GN=ZNF540 PE=4 SV=1
34 : G5DWF6_SILLA 0.58 0.71 5 28 100 123 24 0 0 365 G5DWF6 Zinc finger protein (Fragment) OS=Silene latifolia PE=2 SV=1
35 : G5DWF7_SILLA 0.58 0.71 5 28 100 123 24 0 0 365 G5DWF7 Zinc finger protein (Fragment) OS=Silene latifolia PE=2 SV=1
36 : I1K492_SOYBN 0.58 0.73 3 28 106 131 26 0 0 371 I1K492 Uncharacterized protein OS=Glycine max PE=4 SV=1
37 : I1KSQ4_SOYBN 0.58 0.73 3 28 106 131 26 0 0 371 I1KSQ4 Uncharacterized protein OS=Glycine max PE=4 SV=2
38 : I3SI97_MEDTR 0.58 0.73 3 28 106 131 26 0 0 375 I3SI97 Uncharacterized protein OS=Medicago truncatula PE=2 SV=1
39 : I3SNG8_MEDTR 0.58 0.73 3 28 106 131 26 0 0 225 I3SNG8 Uncharacterized protein OS=Medicago truncatula PE=2 SV=1
40 : K3YTR4_SETIT 0.58 0.77 3 28 92 117 26 0 0 350 K3YTR4 Uncharacterized protein OS=Setaria italica GN=Si017660m.g PE=4 SV=1
41 : K7L6A1_SOYBN 0.58 0.73 3 28 106 131 26 0 0 372 K7L6A1 Uncharacterized protein OS=Glycine max PE=4 SV=1
42 : M3ZA70_NOMLE 0.58 0.75 5 28 318 341 24 0 0 595 M3ZA70 Uncharacterized protein OS=Nomascus leucogenys GN=ZNF540 PE=4 SV=1
43 : V4T0R5_9ROSI 0.58 0.69 3 28 106 131 26 0 0 373 V4T0R5 Uncharacterized protein OS=Citrus clementina GN=CICLE_v10001534mg PE=4 SV=1
44 : V4UZR7_9ROSI 0.58 0.69 3 28 103 128 26 0 0 370 V4UZR7 Uncharacterized protein OS=Citrus clementina GN=CICLE_v10003783mg PE=4 SV=1
45 : W5LUY6_ASTMX 0.58 0.79 5 28 235 258 24 0 0 364 W5LUY6 Uncharacterized protein OS=Astyanax mexicanus PE=4 SV=1
46 : A7TNZ7_VANPO 0.56 0.78 3 29 452 478 27 0 0 486 A7TNZ7 Putative uncharacterized protein OS=Vanderwaltozyma polyspora (strain ATCC 22028 / DSM 70294) GN=Kpol_495p20 PE=4 SV=1
47 : C5E356_LACTC 0.56 0.78 3 29 547 573 27 0 0 682 C5E356 KLTH0H10538p OS=Lachancea thermotolerans (strain ATCC 56472 / CBS 6340 / NRRL Y-8284) GN=KLTH0H10538g PE=4 SV=1
48 : D0NH54_PHYIT 0.56 0.72 3 27 132 156 25 0 0 435 D0NH54 Putative uncharacterized protein OS=Phytophthora infestans (strain T30-4) GN=PITG_10815 PE=4 SV=1
49 : D0NQ12_PHYIT 0.56 0.68 3 27 243 267 25 0 0 555 D0NQ12 Putative uncharacterized protein OS=Phytophthora infestans (strain T30-4) GN=PITG_14515 PE=4 SV=1
50 : D0P2J7_PHYIT 0.56 0.68 3 27 249 273 25 0 0 561 D0P2J7 Putative uncharacterized protein OS=Phytophthora infestans (strain T30-4) GN=PITG_20637 PE=4 SV=1
51 : F2UA42_SALR5 0.56 0.70 3 29 513 539 27 0 0 798 F2UA42 Early growth response protein OS=Salpingoeca rosetta (strain ATCC 50818 / BSB-021) GN=PTSG_05325 PE=4 SV=1
52 : G4YRH0_PHYSP 0.56 0.68 3 27 143 167 25 0 0 482 G4YRH0 Putative uncharacterized protein (Fragment) OS=Phytophthora sojae (strain P6497) GN=PHYSODRAFT_480345 PE=4 SV=1
53 : H3GUQ1_PHYRM 0.56 0.68 3 27 134 158 25 0 0 439 H3GUQ1 Uncharacterized protein OS=Phytophthora ramorum PE=4 SV=1
54 : M0RIM5_MUSAM 0.56 0.72 4 28 109 133 25 0 0 369 M0RIM5 Uncharacterized protein OS=Musa acuminata subsp. malaccensis PE=4 SV=1
55 : M0T9S1_MUSAM 0.56 0.72 4 28 166 190 25 0 0 418 M0T9S1 Uncharacterized protein OS=Musa acuminata subsp. malaccensis PE=4 SV=1
56 : V9E9H7_PHYPR 0.56 0.68 3 27 180 204 25 0 0 505 V9E9H7 Uncharacterized protein (Fragment) OS=Phytophthora parasitica P1569 GN=F443_18706 PE=4 SV=1
57 : V9F0H7_PHYPR 0.56 0.72 3 27 131 155 25 0 0 436 V9F0H7 Uncharacterized protein OS=Phytophthora parasitica P1569 GN=F443_10717 PE=4 SV=1
58 : W2FWN1_PHYPR 0.56 0.68 3 27 180 204 25 0 0 505 W2FWN1 Uncharacterized protein (Fragment) OS=Phytophthora parasitica GN=L915_18184 PE=4 SV=1
59 : W2GQI5_PHYPR 0.56 0.72 3 27 131 155 25 0 0 436 W2GQI5 Uncharacterized protein OS=Phytophthora parasitica GN=L915_10467 PE=4 SV=1
60 : W2I322_PHYPR 0.56 0.68 3 27 180 204 25 0 0 505 W2I322 Uncharacterized protein (Fragment) OS=Phytophthora parasitica GN=L916_18087 PE=4 SV=1
61 : W2L131_PHYPR 0.56 0.72 3 27 131 155 25 0 0 436 W2L131 Uncharacterized protein OS=Phytophthora parasitica GN=L917_10292 PE=4 SV=1
62 : W2MFB2_PHYPR 0.56 0.68 3 27 180 204 25 0 0 505 W2MFB2 Uncharacterized protein (Fragment) OS=Phytophthora parasitica GN=L914_17991 PE=4 SV=1
63 : W2N9R1_PHYPR 0.56 0.72 3 27 131 155 25 0 0 436 W2N9R1 Uncharacterized protein OS=Phytophthora parasitica GN=L914_10325 PE=4 SV=1
64 : W2PK15_PHYPN 0.56 0.68 3 27 155 179 25 0 0 480 W2PK15 Uncharacterized protein OS=Phytophthora parasitica (strain INRA-310) GN=PPTG_17448 PE=4 SV=1
65 : W2Q401_PHYPN 0.56 0.72 3 27 131 155 25 0 0 436 W2Q401 Uncharacterized protein OS=Phytophthora parasitica (strain INRA-310) GN=PPTG_12409 PE=4 SV=1
66 : W2W556_PHYPR 0.56 0.68 3 27 155 179 25 0 0 480 W2W556 Uncharacterized protein OS=Phytophthora parasitica CJ01A1 GN=F441_18565 PE=4 SV=1
67 : W2WVR4_PHYPR 0.56 0.72 3 27 131 155 25 0 0 436 W2WVR4 Uncharacterized protein OS=Phytophthora parasitica CJ01A1 GN=F441_10648 PE=4 SV=1
68 : W2YD18_PHYPR 0.56 0.68 3 27 155 179 25 0 0 480 W2YD18 Uncharacterized protein OS=Phytophthora parasitica P10297 GN=F442_18508 PE=4 SV=1
69 : W2Z517_PHYPR 0.56 0.72 3 27 131 155 25 0 0 435 W2Z517 Uncharacterized protein OS=Phytophthora parasitica P10297 GN=F442_10614 PE=4 SV=1
70 : W5LKW9_ASTMX 0.56 0.88 5 29 200 224 25 0 0 989 W5LKW9 Uncharacterized protein (Fragment) OS=Astyanax mexicanus PE=4 SV=1
71 : A2VD71_XENLA 0.54 0.82 2 29 104 131 28 0 0 344 A2VD71 Gtf3a protein OS=Xenopus laevis GN=gtf3a PE=2 SV=1
72 : A8Q683_MALGO 0.54 0.75 5 28 622 645 24 0 0 708 A8Q683 Putative uncharacterized protein OS=Malassezia globosa (strain ATCC MYA-4612 / CBS 7966) GN=MGL_2879 PE=4 SV=1
73 : E3Q5K4_COLGM 0.54 0.68 1 28 1 28 28 0 0 329 E3Q5K4 Putative uncharacterized protein OS=Colletotrichum graminicola (strain M1.001 / M2 / FGSC 10212) GN=GLRG_01115 PE=4 SV=1
74 : H9KXM7_CALJA 0.54 0.79 5 28 466 489 24 0 0 526 H9KXM7 Uncharacterized protein (Fragment) OS=Callithrix jacchus PE=4 SV=1
75 : I1BL94_RHIO9 0.54 0.75 5 28 86 109 24 0 0 203 I1BL94 Uncharacterized protein OS=Rhizopus delemar (strain RA 99-880 / ATCC MYA-4621 / FGSC 9543 / NRRL 43880) GN=RO3G_01678 PE=4 SV=1
76 : I1IAF9_BRADI 0.54 0.73 3 28 93 118 26 0 0 346 I1IAF9 Uncharacterized protein OS=Brachypodium distachyon GN=BRADI3G45590 PE=4 SV=1
77 : I3T984_LOTJA 0.54 0.73 3 28 108 133 26 0 0 375 I3T984 Uncharacterized protein OS=Lotus japonicus PE=2 SV=1
78 : K7FDS3_PELSI 0.54 0.83 5 28 184 207 24 0 0 656 K7FDS3 Uncharacterized protein (Fragment) OS=Pelodiscus sinensis PE=4 SV=1
79 : M5EJ56_MALS4 0.54 0.75 5 28 464 487 24 0 0 547 M5EJ56 Genomic scaffold, msy_sf_2 OS=Malassezia sympodialis (strain ATCC 42132) GN=MSY001_0362 PE=4 SV=1
80 : M7X598_RHOT1 0.54 0.83 5 28 80 103 24 0 0 584 M7X598 Zinc finger, C2H2-type domain containing protein OS=Rhodosporidium toruloides (strain NP11) GN=RHTO_03245 PE=4 SV=1
81 : TF3A_XENLA 2HGH 0.54 0.82 2 29 126 153 28 0 0 366 P03001 Transcription factor IIIA OS=Xenopus laevis GN=gtf3a PE=1 SV=2
82 : U6HFS1_ECHMU 0.54 0.65 3 28 286 311 26 0 0 510 U6HFS1 Krueppel factor 10 OS=Echinococcus multilocularis GN=EmuJ_000040400 PE=4 SV=1
83 : U6ISZ0_HYMMI 0.54 0.65 3 28 285 310 26 0 0 386 U6ISZ0 Krueppel factor 10 OS=Hymenolepis microstoma GN=HmN_000574300 PE=4 SV=1
84 : U6JKN2_ECHGR 0.54 0.65 3 28 286 311 26 0 0 506 U6JKN2 Krueppel factor 10 OS=Echinococcus granulosus GN=EgrG_000040400 PE=4 SV=1
85 : W6USW3_ECHGR 0.54 0.65 3 28 286 311 26 0 0 387 W6USW3 Krueppel-like factor OS=Echinococcus granulosus GN=EGR_00680 PE=4 SV=1
86 : W8C2M7_CERCA 0.54 0.81 3 28 279 304 26 0 0 426 W8C2M7 Zinc finger protein 2 (Fragment) OS=Ceratitis capitata GN=ZFP2 PE=2 SV=1
87 : B8LVT0_TALSN 0.52 0.67 3 29 9 35 27 0 0 320 B8LVT0 C2H2 finger domain protein, putative OS=Talaromyces stipitatus (strain ATCC 10500 / CBS 375.48 / QM 6759 / NRRL 1006) GN=TSTA_075830 PE=4 SV=1
88 : D6WWJ0_TRICA 0.52 0.85 3 29 278 304 27 0 0 390 D6WWJ0 Putative uncharacterized protein OS=Tribolium castaneum GN=TcasGA2_TC006389 PE=4 SV=1
89 : D8LX07_BLAHO 0.52 0.74 3 29 373 399 27 0 0 411 D8LX07 Singapore isolate B (sub-type 7) whole genome shotgun sequence assembly, scaffold_1 OS=Blastocystis hominis GN=GSBLH_T00001064001 PE=4 SV=1
90 : F2UA16_SALR5 0.52 0.78 3 29 265 291 27 0 0 507 F2UA16 Zinc finger protein zfp31 OS=Salpingoeca rosetta (strain ATCC 50818 / BSB-021) GN=PTSG_05301 PE=4 SV=1
91 : I2GZB2_TETBL 0.52 0.78 3 29 409 435 27 0 0 449 I2GZB2 Uncharacterized protein OS=Tetrapisispora blattae (strain ATCC 34711 / CBS 6284 / DSM 70876 / NBRC 10599 / NRRL Y-10934 / UCD 77-7) GN=TBLA0B06410 PE=4 SV=1
92 : I6ZHM6_ENCRO 0.52 0.66 1 29 15 43 29 0 0 185 I6ZHM6 Zinc finger domain-containing protein OS=Encephalitozoon romaleae (strain SJ-2008) GN=EROM_030670 PE=4 SV=1
93 : I7MAH5_TETTS 0.52 0.70 2 28 278 304 27 0 0 367 I7MAH5 C2H2-type zinc-finger protein OS=Tetrahymena thermophila (strain SB210) GN=TTHERM_00239260 PE=4 SV=1
94 : K8FF24_9CHLO 0.52 0.70 3 29 413 439 27 0 0 470 K8FF24 Unnamed protein product OS=Bathycoccus prasinos GN=Bathy09g02470 PE=4 SV=1
95 : M1KL37_ENCCN 0.52 0.69 1 29 1 29 29 0 0 190 M1KL37 Nuclear zinc finger protein involved in transcriptional control OS=Encephalitozoon cuniculi GN=ECU03_0790 PE=4 SV=1
96 : M9N672_ASHG1 0.52 0.70 3 29 211 237 27 0 0 277 M9N672 FAGL207Wp OS=Ashbya gossypii (strain FDAG1) GN=FAGOS_FAGL207W PE=4 SV=1
97 : Q750Z4_ASHGO 0.52 0.70 3 29 211 237 27 0 0 277 Q750Z4 AGL207Wp OS=Ashbya gossypii (strain ATCC 10895 / CBS 109.51 / FGSC 9923 / NRRL Y-1056) GN=AGL207W PE=4 SV=1
98 : R9XJK1_ASHAC 0.52 0.70 3 29 211 237 27 0 0 277 R9XJK1 AaceriAGL207Wp OS=Ashbya aceri GN=AACERI_AaceriAGL207W PE=4 SV=1
99 : Z379_ENCCU 0.52 0.69 1 29 1 29 29 0 0 190 Q8SW43 Zinc finger C2H2 protein ECU03_0790 OS=Encephalitozoon cuniculi (strain GB-M1) GN=ECU03_0790 PE=4 SV=1
100 : F6RCQ6_XENTR 0.50 0.79 2 29 126 153 28 0 0 366 F6RCQ6 Uncharacterized protein OS=Xenopus tropicalis GN=gtf3a PE=4 SV=1
## ALIGNMENTS 1 - 70
SeqNo PDBNo AA STRUCTURE BP1 BP2 ACC NOCC VAR ....:....1....:....2....:....3....:....4....:....5....:....6....:....7
1 1 A M 0 0 190 5 0
2 2 A V - 0 0 89 10 54 V
3 3 A Y E -A 14 0A 76 86 2 YYYYYYYYYYYYYYYYYYYYYYYYYYFYYYY YYFFYY YY YYYYYFYY YYYYYYYYYYYYYY
4 4 A V E -A 13 0A 85 88 71 VVIIVIIVVVVIVVVVIVTVVVVVVKVVVVV VVVVIV QQ KVPPPVPPVVPPPPPPPPPPPPPP
5 5 A C E +A 12 0A 19 100 4 CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCYCCCCCCCCYCCYCCCCCCCCCCCCCCCCCCCCCCCCY
6 6 A H + 0 0 156 100 85 HHHHHHHHHHHHHHHHHHHHHHHHHDHHHHHEHHHHHHHHEHHHDGIFFDCCQQFIFIFIFIFIFIFIH
7 7 A F - 0 0 99 99 30 YYYYYYYYYYYYYYYYYYYYYYYYY.YYYYYCYYYYYYYYCYYCWWFFFEFFYYFFFFFFFFFFFFFFC
8 8 A E S S+ 0 0 190 100 29 EEEEEEEEEEEEEEEEEEEEEEDEEE.EEDDDKEEDDEEDDKEESEEEEEKEEEEEEEEEEEEEEEEEES
9 9 A N S S+ 0 0 155 101 58 EGGNNGNNGGGGNGGGGNGNGGGGGGDGGGGGDGGGGGGNGDGGHNNSMMDTTGGTSTSTSTSTSTSTSD
10 10 A C + 0 0 31 101 0 CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
11 11 A G + 0 0 50 101 5 GGGGGGGGGNGGGGGGGGGGGGGGGGGGQGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG
12 12 A R E -A 5 0A 159 101 10 KKKKKKKKKRKKKKKKKKKKKKRKKKKKKKKKKKKKKKKKKKKKKKKKKKRKKKKKKKKKKKKKKKKKKK
13 13 A S E -A 4 0A 77 101 74 SKKKKKKKKRKKKKKKKKKKKKKKKKDKKKKKSKKKKKKKKSKKSTVRRRSRRKKRRRRRRRRRRRRRRS
14 14 A F E -A 3 0A 28 101 1 FFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFIFFFFFFFFFFFFFFFFFFFFFFF
15 15 A N S S+ 0 0 129 101 95 NLLLLLLLLLLLLLLLLLLLLLLLLLSLLLLLNLLLLLLLLNLLNNTNNNRNNLVNNNNNNNNNNNNNNN
16 16 A D S >> S- 0 0 51 101 74 RDDDDDDDDEDDDDDDDDDDDDDDDDTDDDDDVDDDDDDDDVDDQVQTTTQTTDDTTTTTTTTTTTTTTD
17 17 A R H 3> S+ 0 0 130 101 57 SSSSSSSSSRSSSSSSSSSSSSSSSSTSSSSSRSSSSSSSSRSSLKRSSSRSSSSSSSSSSSSSSSSSSQ
18 18 A R H 3> S+ 0 0 203 101 58 SSSSSSSSSSSSSSSSSSSSSSSSSSTSSSSSGSSSSSSSSGSSSSQTTTSTTSSTTTTTTTTTTTTTTR
19 19 A K H <> S+ 0 0 91 101 49 RKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKQKKKKKKKKQKKNNKKKKAKKKKKKKKKKKKKKKKKKN
20 20 A L H X S+ 0 0 38 101 1 LLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLL
21 21 A N H < S+ 0 0 100 101 63 TKKKKKKKKKKKKKKKKKKKKKKKKKNKKKKKNKKKKKKKKNKKNNLKKKTKKKKKKKKKKKKKKKKKKQ
22 22 A R H >< S+ 0 0 169 101 27 QRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRR
23 23 A H H >< S+ 0 0 10 101 0 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
24 24 A K G >< S+ 0 0 124 101 92 KFFFFFFFFYFFFFFFFFFYFFFFFFKFFFFFKFFFFFFFFKFFKVLMMMKMMYYMMMMMMMMMMMMMMQ
25 25 A K G X S+ 0 0 154 101 90 KLLLLLLLLLLLLLLLLLLLLLLLLLKLLLLLTLLLLLLLLTLLRKRRRRKRRLLRRRRRRRRRRRRRRR
26 26 A I G < S+ 0 0 124 101 44 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIVIIISIIIIIIIIIIIIIIIIIII
27 27 A H G < S+ 0 0 60 101 0 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
28 28 A T < 0 0 90 82 28 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTLT I TT T
29 29 A R 0 0 306 21 47 R KR R K
## ALIGNMENTS 71 - 100
SeqNo PDBNo AA STRUCTURE BP1 BP2 ACC NOCC VAR ....:....8....:....9....:....0....:....1....:....2....:....3....:....4
1 1 A M 0 0 190 5 0 M M M M
2 2 A V - 0 0 89 10 54 V A V TM I II
3 3 A Y E -A 14 0A 76 86 2 Y Y YF YYYYYFFFFFFFYYFFFFFY
4 4 A V E -A 13 0A 85 88 71 V T II VVVVVVNVVIKQVIRTTTRV
5 5 A C E +A 12 0A 19 100 4 CCCCCCCYCCCCCCCCCCCCCCCCCCCCCC
6 6 A H + 0 0 156 100 85 HEDKGHHNEDHDDDDDSDKDNHQTCPPPCH
7 7 A F - 0 0 99 99 30 FFLCYYYCFFFWWWWFWFYEWFVWFFFFFF
8 8 A E S S+ 0 0 190 100 29 EEEEEDEHEEEEEEEEEKPKEEEEEKKKEE
9 9 A N S S+ 0 0 155 101 58 NGGENGGDGDNGGGGNNNNDNGGNGNNNGN
10 10 A C + 0 0 31 101 0 CCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
11 11 A G + 0 0 50 101 5 GGGGDGGGGGGGGGGGGGGGGEGGGGGGGG
12 12 A R E -A 5 0A 159 101 10 KKRKKKKKKKKRRRRKKKKRKKKKKKKKKK
13 13 A S E -A 4 0A 77 101 74 ASSASKKSSAAQQQQASSSATSRASSSSSM
14 14 A F E -A 3 0A 28 101 1 FFYFFFFFFFFFFFFFFFFFFFFFFFFFFF
15 15 A N S S+ 0 0 129 101 95 KSLNGLLNSSKAAAAVNSYRNPVVPNNNPK
16 16 A D S >> S- 0 0 51 101 74 KDRQDDDQDDKRRRRTRDDQVRDDRAAARK
17 17 A R H 3> S+ 0 0 130 101 57 HSKSSSSRSSHSSSSSKKLRKRNNRRRRRH
18 18 A R H 3> S+ 0 0 203 101 58 NSESSSSSSSNDDDDTSRQSSSSSASSSAN
19 19 A K H <> S+ 0 0 91 101 49 QSHKSKKNSSQEEEERDNHANKKKKNNNKQ
20 20 A L H X S+ 0 0 38 101 1 LLLLLLLLLLLLLLLLLLLLLLLLLMMMLL
21 21 A N H < S+ 0 0 100 101 63 KATSAKKIAAKSSSSKCDKNNNRQSLLLSK
22 22 A R H >< S+ 0 0 169 101 27 VRRERRRRRRVRRRRVRGQRRDRRDRRRDV
23 23 A H H >< S+ 0 0 10 101 0 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
24 24 A K G >< S+ 0 0 124 101 92 QRKKRFFQRRQKKKKQYKEKCLQILHHHLQ
25 25 A K G X S+ 0 0 154 101 90 FRKKRLLKRRFRRRRKRAWKKNLVNKKKNF
26 26 A I G < S+ 0 0 124 101 44 STELIIIITISAAAAIILISLTVTTLLLTT
27 27 A H G < S+ 0 0 60 101 0 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
28 28 A T < 0 0 90 82 28 TTTTTTTTTTTTTTTTTSTALTTTTFFFTT
29 29 A R 0 0 306 21 47 Q Q NNRRRK QRRRRRQ
## SEQUENCE PROFILE AND ENTROPY
SeqNo PDBNo V L I M F W Y G A P S T C H R K Q E N D NOCC NDEL NINS ENTROPY RELENT WEIGHT
1 1 A 0 0 0 100 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5 0 0 0.000 0 1.00
2 2 A 40 0 30 10 0 0 0 0 10 0 0 10 0 0 0 0 0 0 0 0 10 0 0 1.418 47 0.46
3 3 A 0 0 0 0 20 0 80 0 0 0 0 0 0 0 0 0 0 0 0 0 86 0 0 0.497 16 0.97
4 4 A 50 0 13 0 0 0 0 0 0 22 0 6 0 0 2 3 3 0 1 0 88 0 0 1.468 48 0.29
5 5 A 0 0 0 0 0 0 5 0 0 0 0 0 95 0 0 0 0 0 0 0 100 0 0 0.199 6 0.96
6 6 A 0 0 8 0 9 0 0 2 0 3 1 1 4 49 0 2 3 4 2 12 100 1 0 1.817 60 0.15
7 7 A 1 1 0 0 34 9 46 0 0 0 0 0 6 0 0 0 0 2 0 0 99 0 0 1.283 42 0.69
8 8 A 0 0 0 0 0 0 0 0 0 1 2 0 0 1 0 8 0 79 0 9 100 0 0 0.775 25 0.70
9 9 A 0 0 0 2 0 0 0 47 0 0 8 9 0 1 0 0 0 2 24 8 101 0 0 1.516 50 0.41
10 10 A 0 0 0 0 0 0 0 0 0 0 0 0 100 0 0 0 0 0 0 0 101 0 0 0.000 0 1.00
11 11 A 0 0 0 0 0 0 0 96 0 0 0 0 0 0 0 0 1 1 1 1 101 0 0 0.222 7 0.94
12 12 A 0 0 0 0 0 0 0 0 0 0 0 0 0 0 10 90 0 0 0 0 101 0 0 0.323 10 0.89
13 13 A 1 0 0 1 0 0 0 0 7 0 21 2 0 0 21 43 4 0 0 1 101 0 0 1.544 51 0.26
14 14 A 0 0 1 0 98 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 101 0 0 0.111 3 0.98
15 15 A 4 44 0 0 0 0 1 1 4 3 5 1 0 0 2 3 0 0 33 0 101 0 0 1.556 51 0.05
16 16 A 4 0 0 0 0 0 0 0 3 0 0 21 0 0 10 3 6 1 0 52 101 0 0 1.444 48 0.25
17 17 A 0 2 0 0 0 0 0 0 0 0 72 1 0 3 14 5 1 0 2 0 101 0 0 1.009 33 0.43
18 18 A 0 0 0 0 0 0 0 2 2 0 62 21 0 0 3 0 2 1 3 4 101 0 0 1.236 41 0.42
19 19 A 0 0 0 0 0 0 0 0 2 0 4 0 0 2 2 71 5 4 9 1 101 0 0 1.140 38 0.50
20 20 A 0 97 0 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 101 0 0 0.134 4 0.99
21 21 A 0 4 1 0 0 0 0 0 4 0 7 3 1 0 1 67 2 0 9 1 101 0 0 1.287 42 0.37
22 22 A 4 0 0 0 0 0 0 1 0 0 0 0 0 0 89 0 2 1 0 3 101 0 0 0.504 16 0.72
23 23 A 0 0 0 0 0 0 0 0 0 0 0 0 0 100 0 0 0 0 0 0 101 0 0 0.000 0 1.00
24 24 A 1 4 1 19 40 0 5 0 0 0 0 0 1 3 4 15 7 1 0 0 101 0 0 1.841 61 0.07
25 25 A 1 45 0 0 3 1 0 0 1 0 0 2 0 0 31 14 0 0 3 0 101 0 0 1.420 47 0.10
26 26 A 2 6 76 0 0 0 0 0 4 0 4 7 0 0 0 0 0 1 0 0 101 0 0 0.939 31 0.56
27 27 A 0 0 0 0 0 0 0 0 0 0 0 0 0 100 0 0 0 0 0 0 101 0 0 0.000 0 1.00
28 28 A 0 2 1 0 4 0 0 0 1 0 1 90 0 0 0 0 0 0 0 0 82 0 0 0.465 15 0.71
29 29 A 0 0 0 0 0 0 0 0 0 0 0 0 0 0 57 14 19 0 10 0 21 0 0 1.138 37 0.53
## INSERTION LIST
AliNo IPOS JPOS Len Sequence
//