Complet list of 1zto hssp file
Complete list of 1zto.hssp file
HSSP HOMOLOGY DERIVED SECONDARY STRUCTURE OF PROTEINS , VERSION 2.0 2011
PDBID 1ZTO
THRESHOLD according to: t(L)=(290.15 * L ** -0.562) + 5
REFERENCE Sander C., Schneider R. : Database of homology-derived protein structures. Proteins, 9:56-68 (1991).
CONTACT Maintained at http://www.cmbi.ru.nl/ by Maarten L. Hekkelman
DATE file generated on 2014-05-14
HEADER POTASSIUM CHANNEL 15-NOV-96 1ZTO
COMPND MOL_ID: 1; MOLECULE: POTASSIUM CHANNEL PROTEIN RCK4; CHAIN: A; FRAGMEN
SOURCE MOL_ID: 1; ORGANISM_SCIENTIFIC: HOMO SAPIENS; ORGANISM_COMMON: HUMAN;
AUTHOR C.ANTZ,M.GEYER,B.FAKLER,M.SCHOTT,R.FRANK,H.R.GUY, J.P.RUPPERSBERG,H.R.
DBREF 1ZTO A 1 36 UNP P15385 KCNA4_RAT 1 36
SEQLENGTH 37
NCHAIN 1 chain(s) in 1ZTO data set
NALIGN 43
NOTATION : ID: EMBL/SWISSPROT identifier of the aligned (homologous) protein
NOTATION : STRID: if the 3-D structure of the aligned protein is known, then STRID is the Protein Data Bank identifier as taken
NOTATION : from the database reference or DR-line of the EMBL/SWISSPROT entry
NOTATION : %IDE: percentage of residue identity of the alignment
NOTATION : %SIM (%WSIM): (weighted) similarity of the alignment
NOTATION : IFIR/ILAS: first and last residue of the alignment in the test sequence
NOTATION : JFIR/JLAS: first and last residue of the alignment in the alignend protein
NOTATION : LALI: length of the alignment excluding insertions and deletions
NOTATION : NGAP: number of insertions and deletions in the alignment
NOTATION : LGAP: total length of all insertions and deletions
NOTATION : LSEQ2: length of the entire sequence of the aligned protein
NOTATION : ACCNUM: SwissProt accession number
NOTATION : PROTEIN: one-line description of aligned protein
NOTATION : SeqNo,PDBNo,AA,STRUCTURE,BP1,BP2,ACC: sequential and PDB residue numbers, amino acid (lower case = Cys), secondary
NOTATION : structure, bridge partners, solvent exposure as in DSSP (Kabsch and Sander, Biopolymers 22, 2577-2637(1983)
NOTATION : VAR: sequence variability on a scale of 0-100 as derived from the NALIGN alignments
NOTATION : pair of lower case characters (AvaK) in the alignend sequence bracket a point of insertion in this sequence
NOTATION : dots (....) in the alignend sequence indicate points of deletion in this sequence
NOTATION : SEQUENCE PROFILE: relative frequency of an amino acid type at each position. Asx and Glx are in their
NOTATION : acid/amide form in proportion to their database frequencies
NOTATION : NOCC: number of aligned sequences spanning this position (including the test sequence)
NOTATION : NDEL: number of sequences with a deletion in the test protein at this position
NOTATION : NINS: number of sequences with an insertion in the test protein at this position
NOTATION : ENTROPY: entropy measure of sequence variability at this position
NOTATION : RELENT: relative entropy, i.e. entropy normalized to the range 0-100
NOTATION : WEIGHT: conservation weight
## PROTEINS : identifier and alignment statistics
NR. ID STRID %IDE %WSIM IFIR ILAS JFIR JLAS LALI NGAP LGAP LSEQ2 ACCNUM PROTEIN
1 : F1MFZ3_BOVIN 1.00 1.00 1 36 1 36 36 0 0 661 F1MFZ3 Potassium voltage-gated channel subfamily A member 4 OS=Bos taurus GN=KCNA4 PE=4 SV=1
2 : F1SGM9_PIG 1.00 1.00 1 36 1 36 36 0 0 654 F1SGM9 Uncharacterized protein OS=Sus scrofa GN=LOC100037947 PE=4 SV=1
3 : F6QDP8_MACMU 1.00 1.00 1 36 1 36 36 0 0 652 F6QDP8 Uncharacterized protein OS=Macaca mulatta GN=KCNA4 PE=4 SV=1
4 : F6VKX0_CALJA 1.00 1.00 1 36 1 36 36 0 0 652 F6VKX0 Uncharacterized protein OS=Callithrix jacchus GN=KCNA4 PE=4 SV=1
5 : F7EUZ9_MONDO 1.00 1.00 1 36 1 36 36 0 0 658 F7EUZ9 Uncharacterized protein OS=Monodelphis domestica GN=KCNA4 PE=4 SV=1
6 : F7IQA3_CALJA 1.00 1.00 1 36 1 36 36 0 0 653 F7IQA3 Potassium voltage-gated channel subfamily A member 4 OS=Callithrix jacchus GN=KCNA4 PE=2 SV=1
7 : G1PSL7_MYOLU 1.00 1.00 1 36 1 36 36 0 0 657 G1PSL7 Uncharacterized protein OS=Myotis lucifugus GN=KCNA4 PE=4 SV=1
8 : G1S871_NOMLE 1.00 1.00 1 36 1 36 36 0 0 652 G1S871 Uncharacterized protein OS=Nomascus leucogenys GN=KCNA4 PE=4 SV=1
9 : G3GZ96_CRIGR 1.00 1.00 1 36 1 36 36 0 0 654 G3GZ96 Potassium voltage-gated channel subfamily A member 4 OS=Cricetulus griseus GN=I79_003156 PE=4 SV=1
10 : G3QWK8_GORGO 1.00 1.00 1 36 1 36 36 0 0 653 G3QWK8 Uncharacterized protein OS=Gorilla gorilla gorilla GN=101142565 PE=4 SV=1
11 : G3S8C4_GORGO 1.00 1.00 1 36 1 36 36 0 0 637 G3S8C4 Uncharacterized protein OS=Gorilla gorilla gorilla GN=101142565 PE=4 SV=1
12 : G3U8V1_LOXAF 1.00 1.00 1 36 1 36 36 0 0 638 G3U8V1 Uncharacterized protein OS=Loxodonta africana GN=KCNA4 PE=4 SV=1
13 : G3V6L7_RAT 1.00 1.00 1 36 1 36 36 0 0 654 G3V6L7 Potassium voltage-gated channel subfamily A member 4 OS=Rattus norvegicus GN=Kcna4 PE=4 SV=1
14 : G3W191_SARHA 1.00 1.00 1 36 1 36 36 0 0 606 G3W191 Uncharacterized protein OS=Sarcophilus harrisii GN=KCNA4 PE=4 SV=1
15 : G7PQH8_MACFA 1.00 1.00 1 36 1 36 36 0 0 652 G7PQH8 Voltage-gated potassium channel subunit Kv1.4 OS=Macaca fascicularis GN=EGM_05762 PE=4 SV=1
16 : H0XIB5_OTOGA 1.00 1.00 1 36 1 36 36 0 0 654 H0XIB5 Uncharacterized protein OS=Otolemur garnettii GN=KCNA4 PE=4 SV=1
17 : H2Q3C2_PANTR 1.00 1.00 1 36 1 36 36 0 0 653 H2Q3C2 Uncharacterized protein OS=Pan troglodytes GN=KCNA4 PE=4 SV=1
18 : I3L9C7_PIG 1.00 1.00 1 36 1 36 36 0 0 596 I3L9C7 Uncharacterized protein OS=Sus scrofa GN=KCNA4 PE=4 SV=1
19 : I3N544_SPETR 1.00 1.00 1 36 1 36 36 0 0 654 I3N544 Uncharacterized protein OS=Spermophilus tridecemlineatus GN=KCNA4 PE=4 SV=1
20 : KCNA4_BOVIN 1.00 1.00 1 36 1 36 36 0 0 660 Q05037 Potassium voltage-gated channel subfamily A member 4 OS=Bos taurus GN=KCNA4 PE=2 SV=1
21 : KCNA4_HUMAN 1.00 1.00 1 36 1 36 36 0 0 653 P22459 Potassium voltage-gated channel subfamily A member 4 OS=Homo sapiens GN=KCNA4 PE=1 SV=2
22 : KCNA4_MOUSE 1.00 1.00 1 36 1 36 36 0 0 654 Q61423 Potassium voltage-gated channel subfamily A member 4 OS=Mus musculus GN=Kcna4 PE=1 SV=2
23 : KCNA4_MUSPF 1.00 1.00 1 36 1 36 36 0 0 654 Q28527 Potassium voltage-gated channel subfamily A member 4 OS=Mustela putorius furo GN=KCNA4 PE=2 SV=1
24 : KCNA4_RAT 1KN7 1.00 1.00 1 36 1 36 36 0 0 655 P15385 Potassium voltage-gated channel subfamily A member 4 OS=Rattus norvegicus GN=Kcna4 PE=1 SV=1
25 : L5KX80_PTEAL 1.00 1.00 1 36 1 36 36 0 0 652 L5KX80 Potassium voltage-gated channel subfamily A member 4 OS=Pteropus alecto GN=PAL_GLEAN10018014 PE=4 SV=1
26 : M3XDS9_FELCA 1.00 1.00 1 36 1 36 36 0 0 655 M3XDS9 Uncharacterized protein OS=Felis catus GN=KCNA4 PE=4 SV=1
27 : Q5REB6_PONAB 1.00 1.00 1 36 1 36 36 0 0 653 Q5REB6 Putative uncharacterized protein DKFZp459N0126 OS=Pongo abelii GN=DKFZp459N0126 PE=2 SV=1
28 : Q9GLF1_BOVIN 1.00 1.00 1 36 1 36 36 0 0 661 Q9GLF1 Voltage-gated K+ channel Kv1.4 OS=Bos taurus PE=2 SV=1
29 : W5PA81_SHEEP 1.00 1.00 1 36 1 36 36 0 0 662 W5PA81 Uncharacterized protein OS=Ovis aries GN=KCNA4 PE=4 SV=1
30 : F1PU39_CANFA 0.97 1.00 1 36 1 36 36 0 0 666 F1PU39 Uncharacterized protein OS=Canis familiaris GN=KCNA4 PE=4 SV=2
31 : F6RH21_ORNAN 0.97 1.00 1 36 1 36 36 0 0 661 F6RH21 Uncharacterized protein OS=Ornithorhynchus anatinus GN=KCNA4 PE=4 SV=1
32 : G1KA04_ANOCA 0.97 1.00 1 36 1 36 36 0 0 662 G1KA04 Uncharacterized protein OS=Anolis carolinensis GN=KCNA4 PE=4 SV=2
33 : K7FXT7_PELSI 0.97 0.97 1 36 1 36 36 0 0 649 K7FXT7 Uncharacterized protein OS=Pelodiscus sinensis GN=KCNA4 PE=4 SV=1
34 : U3I8V1_ANAPL 0.93 0.97 1 30 1 30 30 0 0 617 U3I8V1 Uncharacterized protein OS=Anas platyrhynchos GN=KCNA4 PE=4 SV=1
35 : H0Z2W9_TAEGU 0.92 1.00 1 36 1 36 36 0 0 660 H0Z2W9 Uncharacterized protein OS=Taeniopygia guttata GN=KCNA4 PE=4 SV=1
36 : Q90W36_COLLI 0.92 0.97 1 36 1 36 36 0 0 662 Q90W36 Potassium channel shaker alpha subunit pKv 1.4 OS=Columba livia PE=2 SV=1
37 : Q9PWM8_CHICK 0.92 0.97 1 36 1 36 36 0 0 483 Q9PWM8 Potassium channel Shaker alpha subunit variant cKv1.4(M) OS=Gallus gallus PE=2 SV=1
38 : Q9YGX8_CHICK 0.92 0.97 1 36 1 36 36 0 0 662 Q9YGX8 Potassium channel Shaker cKv1.4 OS=Gallus gallus GN=KCNA4 PE=2 SV=1
39 : R0LGU6_ANAPL 0.92 0.97 1 36 1 36 36 0 0 662 R0LGU6 Potassium voltage-gated channel subfamily A member 4 (Fragment) OS=Anas platyrhynchos GN=Anapl_04818 PE=4 SV=1
40 : U3KCM9_FICAL 0.89 1.00 1 36 1 36 36 0 0 650 U3KCM9 Uncharacterized protein OS=Ficedula albicollis GN=KCNA4 PE=4 SV=1
41 : W5KF13_ASTMX 0.68 0.78 1 36 1 37 37 1 1 688 W5KF13 Uncharacterized protein OS=Astyanax mexicanus GN=KCNA4 PE=4 SV=1
42 : V8PEB8_OPHHA 0.60 0.69 1 35 1 29 35 1 6 560 V8PEB8 Potassium voltage-gated channel subfamily A member 4 (Fragment) OS=Ophiophagus hannah GN=KCNA4 PE=4 SV=1
43 : G5C6P0_HETGA 0.58 0.73 1 33 145 173 33 1 4 727 G5C6P0 Potassium voltage-gated channel subfamily A member 4 OS=Heterocephalus glaber GN=GW7_02804 PE=4 SV=1
## ALIGNMENTS 1 - 43
SeqNo PDBNo AA STRUCTURE BP1 BP2 ACC NOCC VAR ....:....1....:....2....:....3....:....4....:....5....:....6....:....7
1 1 A M 0 0 243 44 0 MMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMM
2 2 A E - 0 0 158 44 0 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE
3 3 A V - 0 0 87 44 18 VVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVFVV
4 4 A A + 0 0 106 44 0 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
5 5 A M - 0 0 156 44 0 MMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMM
6 6 A V + 0 0 145 44 0 VVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVV
7 7 A S + 0 0 117 44 12 SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSGSS
8 8 A A + 0 0 86 44 0 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
9 9 A E + 0 0 159 44 18 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEDDDDDDDDEE
10 10 A S + 0 0 67 44 0 SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
11 11 A S S S- 0 0 129 44 12 SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSGSS
12 12 A G S S- 0 0 79 44 0 GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG
13 13 A C S > S+ 0 0 100 44 0 CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
14 14 A N T 3 S+ 0 0 78 44 0 NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
15 15 A S T 3 + 0 0 89 44 26 SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSTSSSSTPSS
16 16 A H < + 0 0 127 44 0 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
17 17 A M S S- 0 0 97 44 4 MMMMMMMMMMMMMMMMMMMMMMMMMMMMMMLMMMMMMMMLMML
18 18 A P >> - 0 0 93 44 0 PPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPP
19 19 A Y T 34 S+ 0 0 244 44 0 YYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYY
20 20 A G T >4 S+ 0 0 38 44 0 GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG
21 21 A Y G X> S+ 0 0 144 44 60 YYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYGQ
22 22 A A G 3< S+ 0 0 85 44 32 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAASE
23 23 A A G <4 S+ 0 0 65 44 75 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAVVAVVVVAQEI
24 24 A Q T <> S+ 0 0 79 44 39 QQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQAED
25 25 A A H X S+ 0 0 56 44 69 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAArKR
26 26 A R H > S+ 0 0 164 42 0 RRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRr..
27 27 A A H 4 S+ 0 0 39 42 27 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAE..
28 28 A R H X S+ 0 0 170 42 0 RRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRR..
29 29 A E H >X S+ 0 0 94 42 0 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE..
30 30 A R H 3X S+ 0 0 112 43 24 RRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRR.M
31 31 A E H 34 S+ 0 0 76 42 15 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE EEEEEEE.Q
32 32 A R H << S+ 0 0 203 43 35 RRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRR RRRRRRRIK
33 33 A L H < S+ 0 0 103 43 37 LLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLL LLLLLLELV
34 34 A A S < S+ 0 0 55 42 57 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA AAAAAARK
35 35 A H + 0 0 138 42 42 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHQHQH QQQQQQHD
36 36 A S 0 0 109 41 0 SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS SSSSSSS
37 37 A X 0 0 271 0 0
## SEQUENCE PROFILE AND ENTROPY
SeqNo PDBNo V L I M F W Y G A P S T C H R K Q E N D NOCC NDEL NINS ENTROPY RELENT WEIGHT
1 1 A 0 0 0 100 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 44 0 0 0.000 0 1.00
2 2 A 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 100 0 0 44 0 0 0.000 0 1.00
3 3 A 98 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 44 0 0 0.108 3 0.82
4 4 A 0 0 0 0 0 0 0 0 100 0 0 0 0 0 0 0 0 0 0 0 44 0 0 0.000 0 1.00
5 5 A 0 0 0 100 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 44 0 0 0.000 0 1.00
6 6 A 100 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 44 0 0 0.000 0 1.00
7 7 A 0 0 0 0 0 0 0 2 0 0 98 0 0 0 0 0 0 0 0 0 44 0 0 0.108 3 0.87
8 8 A 0 0 0 0 0 0 0 0 100 0 0 0 0 0 0 0 0 0 0 0 44 0 0 0.000 0 1.00
9 9 A 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 82 0 18 44 0 0 0.474 15 0.81
10 10 A 0 0 0 0 0 0 0 0 0 0 100 0 0 0 0 0 0 0 0 0 44 0 0 0.000 0 1.00
11 11 A 0 0 0 0 0 0 0 2 0 0 98 0 0 0 0 0 0 0 0 0 44 0 0 0.108 3 0.87
12 12 A 0 0 0 0 0 0 0 100 0 0 0 0 0 0 0 0 0 0 0 0 44 0 0 0.000 0 1.00
13 13 A 0 0 0 0 0 0 0 0 0 0 0 0 100 0 0 0 0 0 0 0 44 0 0 0.000 0 1.00
14 14 A 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 100 0 44 0 0 0.000 0 1.00
15 15 A 0 0 0 0 0 0 0 0 0 2 93 5 0 0 0 0 0 0 0 0 44 0 0 0.292 9 0.73
16 16 A 0 0 0 0 0 0 0 0 0 0 0 0 0 100 0 0 0 0 0 0 44 0 0 0.000 0 1.00
17 17 A 0 7 0 93 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 44 0 0 0.249 8 0.96
18 18 A 0 0 0 0 0 0 0 0 0 100 0 0 0 0 0 0 0 0 0 0 44 0 0 0.000 0 1.00
19 19 A 0 0 0 0 0 0 100 0 0 0 0 0 0 0 0 0 0 0 0 0 44 0 0 0.000 0 1.00
20 20 A 0 0 0 0 0 0 0 100 0 0 0 0 0 0 0 0 0 0 0 0 44 0 0 0.000 0 1.00
21 21 A 0 0 0 0 0 0 95 2 0 0 0 0 0 0 0 0 2 0 0 0 44 0 0 0.216 7 0.40
22 22 A 0 0 0 0 0 0 0 0 95 0 2 0 0 0 0 0 0 2 0 0 44 0 0 0.216 7 0.67
23 23 A 14 0 2 0 0 0 0 0 80 0 0 0 0 0 0 0 2 2 0 0 44 0 0 0.712 23 0.25
24 24 A 0 0 0 0 0 0 0 0 2 0 0 0 0 0 0 0 93 2 0 2 44 0 0 0.324 10 0.60
25 25 A 0 0 0 0 0 0 0 0 93 0 0 0 0 0 5 2 0 0 0 0 44 2 1 0.292 9 0.31
26 26 A 0 0 0 0 0 0 0 0 0 0 0 0 0 0 100 0 0 0 0 0 42 0 0 0.000 0 1.00
27 27 A 0 0 0 0 0 0 0 0 98 0 0 0 0 0 0 0 0 2 0 0 42 0 0 0.113 3 0.73
28 28 A 0 0 0 0 0 0 0 0 0 0 0 0 0 0 100 0 0 0 0 0 42 0 0 0.000 0 1.00
29 29 A 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 100 0 0 42 0 0 0.000 0 1.00
30 30 A 0 0 0 2 0 0 0 0 0 0 0 0 0 0 98 0 0 0 0 0 43 0 0 0.110 3 0.75
31 31 A 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 98 0 0 42 0 0 0.113 3 0.84
32 32 A 0 0 2 0 0 0 0 0 0 0 0 0 0 0 95 2 0 0 0 0 43 0 0 0.220 7 0.65
33 33 A 2 95 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 0 0 43 0 0 0.220 7 0.63
34 34 A 0 0 0 0 0 0 0 0 95 0 0 0 0 0 2 2 0 0 0 0 42 0 0 0.224 7 0.43
35 35 A 0 0 0 0 0 0 0 0 0 0 0 0 0 79 0 0 19 0 0 2 42 0 0 0.594 19 0.57
36 36 A 0 0 0 0 0 0 0 0 0 0 100 0 0 0 0 0 0 0 0 0 41 0 0 0.000 0 1.00
37 37 A 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0.000 0 1.00
## INSERTION LIST
AliNo IPOS JPOS Len Sequence
41 26 26 1 rAr
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