Complet list of 1zn5 hssp file
Complete list of 1zn5.hssp file
HSSP HOMOLOGY DERIVED SECONDARY STRUCTURE OF PROTEINS , VERSION 2.0 2011
PDBID 1ZN5
THRESHOLD according to: t(L)=(290.15 * L ** -0.562) + 5
REFERENCE Sander C., Schneider R. : Database of homology-derived protein structures. Proteins, 9:56-68 (1991).
CONTACT Maintained at http://www.cmbi.ru.nl/ by Maarten L. Hekkelman
DATE file generated on 2014-05-14
HEADER VIRUS 11-MAY-05 1ZN5
COMPND MOL_ID: 1; MOLECULE: COAT PROTEIN B; CHAIN: A; SYNONYM: MAJOR COAT PRO
SOURCE MOL_ID: 1; ORGANISM_SCIENTIFIC: PSEUDOMONAS PHAGE PF1; ORGANISM_TAXID:
AUTHOR D.S.THIRIOT,A.A.NEVZOROV,S.J.OPELLA
DBREF 1ZN5 A 1 46 UNP P03621 COATB_BPPF1 37 82
SEQLENGTH 44
NCHAIN 1 chain(s) in 1ZN5 data set
NALIGN 69
NOTATION : ID: EMBL/SWISSPROT identifier of the aligned (homologous) protein
NOTATION : STRID: if the 3-D structure of the aligned protein is known, then STRID is the Protein Data Bank identifier as taken
NOTATION : from the database reference or DR-line of the EMBL/SWISSPROT entry
NOTATION : %IDE: percentage of residue identity of the alignment
NOTATION : %SIM (%WSIM): (weighted) similarity of the alignment
NOTATION : IFIR/ILAS: first and last residue of the alignment in the test sequence
NOTATION : JFIR/JLAS: first and last residue of the alignment in the alignend protein
NOTATION : LALI: length of the alignment excluding insertions and deletions
NOTATION : NGAP: number of insertions and deletions in the alignment
NOTATION : LGAP: total length of all insertions and deletions
NOTATION : LSEQ2: length of the entire sequence of the aligned protein
NOTATION : ACCNUM: SwissProt accession number
NOTATION : PROTEIN: one-line description of aligned protein
NOTATION : SeqNo,PDBNo,AA,STRUCTURE,BP1,BP2,ACC: sequential and PDB residue numbers, amino acid (lower case = Cys), secondary
NOTATION : structure, bridge partners, solvent exposure as in DSSP (Kabsch and Sander, Biopolymers 22, 2577-2637(1983)
NOTATION : VAR: sequence variability on a scale of 0-100 as derived from the NALIGN alignments
NOTATION : pair of lower case characters (AvaK) in the alignend sequence bracket a point of insertion in this sequence
NOTATION : dots (....) in the alignend sequence indicate points of deletion in this sequence
NOTATION : SEQUENCE PROFILE: relative frequency of an amino acid type at each position. Asx and Glx are in their
NOTATION : acid/amide form in proportion to their database frequencies
NOTATION : NOCC: number of aligned sequences spanning this position (including the test sequence)
NOTATION : NDEL: number of sequences with a deletion in the test protein at this position
NOTATION : NINS: number of sequences with an insertion in the test protein at this position
NOTATION : ENTROPY: entropy measure of sequence variability at this position
NOTATION : RELENT: relative entropy, i.e. entropy normalized to the range 0-100
NOTATION : WEIGHT: conservation weight
## PROTEINS : identifier and alignment statistics
NR. ID STRID %IDE %WSIM IFIR ILAS JFIR JLAS LALI NGAP LGAP LSEQ2 ACCNUM PROTEIN
1 : CAPSD_BPPF1 2XKM 1.00 1.00 1 44 38 81 44 0 0 82 P03621 Capsid protein G8P OS=Pseudomonas phage Pf1 GN=VIII PE=1 SV=2
2 : G5FWW4_9PSED 1.00 1.00 1 44 38 81 44 0 0 82 G5FWW4 Uncharacterized protein OS=Pseudomonas sp. 2_1_26 GN=HMPREF1030_03967 PE=4 SV=1
3 : H3T6P1_PSEAE 1.00 1.00 1 44 35 78 44 0 0 79 H3T6P1 Coat protein B of bacteriophage Pf1 OS=Pseudomonas aeruginosa MPAO1/P1 GN=O1O_28956 PE=4 SV=1
4 : H3TNJ5_PSEAE 1.00 1.00 1 44 35 78 44 0 0 79 H3TNJ5 Coat protein B of bacteriophage Pf1 OS=Pseudomonas aeruginosa MPAO1/P2 GN=O1Q_29525 PE=4 SV=1
5 : K0Y6C3_PSEAI 1.00 1.00 1 44 35 78 44 0 0 79 K0Y6C3 Coat protein B of bacteriophage Pf1 OS=Pseudomonas aeruginosa PAO579 GN=A161_03675 PE=4 SV=1
6 : K1BX84_PSEAI 1.00 1.00 1 44 38 81 44 0 0 82 K1BX84 Coat protein B of bacteriophage Pf1 OS=Pseudomonas aeruginosa ATCC 700888 GN=coaB PE=4 SV=1
7 : K1CY68_PSEAI 1.00 1.00 1 44 38 81 44 0 0 82 K1CY68 Coat protein B of bacteriophage Pf1 OS=Pseudomonas aeruginosa ATCC 25324 GN=coaB PE=4 SV=1
8 : M1YJV5_PSEAI 1.00 1.00 1 44 38 81 44 0 0 82 M1YJV5 Uncharacterized protein OS=Pseudomonas aeruginosa 18A GN=PA18A_2405 PE=4 SV=1
9 : N4WEF7_PSEAI 1.00 1.00 1 44 35 78 44 0 0 79 N4WEF7 Coat protein B of bacteriophage Pf1 OS=Pseudomonas aeruginosa PA45 GN=H734_19445 PE=4 SV=1
10 : Q9I5K5_PSEAE 1.00 1.00 1 44 38 81 44 0 0 82 Q9I5K5 Coat protein B of bacteriophage Pf1 OS=Pseudomonas aeruginosa (strain ATCC 15692 / PAO1 / 1C / PRS 101 / LMG 12228) GN=coaB PE=4 SV=1
11 : S0I4N1_PSEAI 1.00 1.00 1 44 38 81 44 0 0 82 S0I4N1 Capsid protein G8P OS=Pseudomonas aeruginosa PAK GN=PAK_05154 PE=4 SV=1
12 : T2E9H3_PSEAI 1.00 1.00 1 44 38 81 44 0 0 82 T2E9H3 Capsid protein G8P OS=Pseudomonas aeruginosa PAO581 GN=viii PE=4 SV=1
13 : T2EH33_PSEAI 1.00 1.00 1 44 38 81 44 0 0 82 T2EH33 Capsid protein G8P OS=Pseudomonas aeruginosa c7447m GN=viii PE=4 SV=1
14 : U5QZ33_PSEAE 1.00 1.00 1 44 38 81 44 0 0 82 U5QZ33 Capsid protein G8P OS=Pseudomonas aeruginosa PAO1-VE2 GN=viii PE=4 SV=1
15 : U5RMH6_PSEAE 1.00 1.00 1 44 38 81 44 0 0 82 U5RMH6 Capsid protein G8P OS=Pseudomonas aeruginosa PAO1-VE13 GN=viii PE=4 SV=1
16 : U8D5J0_PSEAI 1.00 1.00 1 44 38 81 44 0 0 82 U8D5J0 Capsid protein G8P OS=Pseudomonas aeruginosa C40 GN=Q087_04525 PE=4 SV=1
17 : U8DL54_PSEAI 1.00 1.00 1 44 38 81 44 0 0 82 U8DL54 Capsid protein G8P OS=Pseudomonas aeruginosa C41 GN=Q088_00678 PE=4 SV=1
18 : U8DQV9_PSEAI 1.00 1.00 1 44 38 81 44 0 0 82 U8DQV9 Capsid protein G8P OS=Pseudomonas aeruginosa C23 GN=Q086_05479 PE=4 SV=1
19 : U8E2R0_PSEAI 1.00 1.00 1 44 38 81 44 0 0 82 U8E2R0 Capsid protein G8P OS=Pseudomonas aeruginosa C20 GN=Q085_05480 PE=4 SV=1
20 : U8GK42_PSEAI 1.00 1.00 1 44 38 81 44 0 0 82 U8GK42 Capsid protein G8P OS=Pseudomonas aeruginosa BL18 GN=Q072_04394 PE=4 SV=1
21 : U8KDS2_PSEAI 1.00 1.00 1 44 38 81 44 0 0 82 U8KDS2 Capsid protein G8P OS=Pseudomonas aeruginosa BL09 GN=Q063_04439 PE=4 SV=1
22 : U8M7R7_PSEAI 1.00 1.00 1 44 38 81 44 0 0 82 U8M7R7 Capsid protein G8P OS=Pseudomonas aeruginosa BL04 GN=Q058_03816 PE=4 SV=1
23 : U8PFP5_PSEAI 1.00 1.00 1 44 38 81 44 0 0 82 U8PFP5 Capsid protein G8P OS=Pseudomonas aeruginosa BWHPSA024 GN=Q037_00033 PE=4 SV=1
24 : U8QGM5_PSEAI 1.00 1.00 1 44 38 81 44 0 0 82 U8QGM5 Capsid protein G8P OS=Pseudomonas aeruginosa BWHPSA023 GN=Q036_04314 PE=4 SV=1
25 : U8VB85_PSEAI 1.00 1.00 1 44 38 81 44 0 0 82 U8VB85 Capsid protein G8P OS=Pseudomonas aeruginosa BWHPSA005 GN=Q018_06276 PE=4 SV=1
26 : U8YIT6_PSEAI 1.00 1.00 1 44 38 81 44 0 0 82 U8YIT6 Capsid protein G8P OS=Pseudomonas aeruginosa X13273 GN=Q013_05507 PE=4 SV=1
27 : U9A6M5_PSEAI 1.00 1.00 1 44 38 81 44 0 0 82 U9A6M5 Capsid protein G8P OS=Pseudomonas aeruginosa 19660 GN=Q010_03342 PE=4 SV=1
28 : U9B4C4_PSEAI 1.00 1.00 1 44 38 81 44 0 0 82 U9B4C4 Capsid protein G8P OS=Pseudomonas aeruginosa CF18 GN=Q002_05973 PE=4 SV=1
29 : U9BLP9_PSEAI 1.00 1.00 1 44 38 81 44 0 0 82 U9BLP9 Capsid protein G8P OS=Pseudomonas aeruginosa X24509 GN=Q005_05709 PE=4 SV=1
30 : U9C6T7_PSEAI 1.00 1.00 1 44 38 81 44 0 0 82 U9C6T7 Capsid protein G8P OS=Pseudomonas aeruginosa UDL GN=Q006_00055 PE=4 SV=1
31 : U9DLS7_PSEAI 1.00 1.00 1 44 38 81 44 0 0 82 U9DLS7 Capsid protein G8P OS=Pseudomonas aeruginosa 62 GN=P997_01945 PE=4 SV=1
32 : U9F538_PSEAI 1.00 1.00 1 44 38 81 44 0 0 82 U9F538 Capsid protein G8P OS=Pseudomonas aeruginosa BL25 GN=Q079_02858 PE=4 SV=1
33 : U9FCH0_PSEAI 1.00 1.00 1 44 38 81 44 0 0 82 U9FCH0 Capsid protein G8P OS=Pseudomonas aeruginosa BL23 GN=Q077_04961 PE=4 SV=1
34 : U9HH00_PSEAI 1.00 1.00 1 44 38 81 44 0 0 82 U9HH00 Capsid protein G8P OS=Pseudomonas aeruginosa BL20 GN=Q074_04150 PE=4 SV=1
35 : U9KC45_PSEAI 1.00 1.00 1 44 38 81 44 0 0 82 U9KC45 Capsid protein G8P OS=Pseudomonas aeruginosa BL02 GN=Q056_02298 PE=4 SV=1
36 : U9L843_PSEAI 1.00 1.00 1 44 38 81 44 0 0 82 U9L843 Capsid protein G8P OS=Pseudomonas aeruginosa BWHPSA016 GN=Q029_05071 PE=4 SV=1
37 : U9LXC0_PSEAI 1.00 1.00 1 44 38 81 44 0 0 82 U9LXC0 Capsid protein G8P OS=Pseudomonas aeruginosa BWHPSA015 GN=Q028_04960 PE=4 SV=1
38 : U9N4P9_PSEAI 1.00 1.00 1 44 38 81 44 0 0 82 U9N4P9 Capsid protein G8P OS=Pseudomonas aeruginosa BWHPSA009 GN=Q022_04432 PE=4 SV=1
39 : U9Q8W1_PSEAI 1.00 1.00 1 44 38 81 44 0 0 82 U9Q8W1 Capsid protein G8P OS=Pseudomonas aeruginosa S54485 GN=Q007_02770 PE=4 SV=1
40 : V4WWR2_PSEAI 1.00 1.00 1 44 38 81 44 0 0 82 V4WWR2 Capsid protein OS=Pseudomonas aeruginosa DHS01 GN=DPADHS01_03555 PE=4 SV=1
41 : V5T5B8_PSEAI 1.00 1.00 1 44 38 81 44 0 0 82 V5T5B8 Capsid protein OS=Pseudomonas aeruginosa MTB-1 GN=U769_25625 PE=4 SV=1
42 : V8EFZ5_PSEAI 1.00 1.00 1 44 38 81 44 0 0 82 V8EFZ5 Capsid protein OS=Pseudomonas aeruginosa VRFPA07 GN=X778_17435 PE=4 SV=1
43 : V8EML7_PSEAI 1.00 1.00 1 44 35 78 44 0 0 79 V8EML7 Capsid protein OS=Pseudomonas aeruginosa VRFPA08 GN=X922_09030 PE=4 SV=1
44 : W0WNT7_PSEAI 1.00 1.00 1 44 38 81 44 0 0 82 W0WNT7 Putative secreted protein OS=Pseudomonas aeruginosa MH38 GN=P38_5232 PE=4 SV=1
45 : W1R556_PSEAI 1.00 1.00 1 44 38 81 44 0 0 82 W1R556 Capsid protein OS=Pseudomonas aeruginosa DHS29 GN=V441_03640 PE=4 SV=1
46 : U8G752_PSEAI 0.98 1.00 1 44 38 81 44 0 0 82 U8G752 Capsid protein G8P OS=Pseudomonas aeruginosa M8A.1 GN=Q080_01216 PE=4 SV=1
47 : U8NVF8_PSEAI 0.98 1.00 1 44 38 81 44 0 0 82 U8NVF8 Capsid protein G8P OS=Pseudomonas aeruginosa BWHPSA025 GN=Q038_05779 PE=4 SV=1
48 : A6VCB5_PSEA7 0.95 1.00 1 44 38 81 44 0 0 82 A6VCB5 Coat protein B of bacteriophage Pf1 OS=Pseudomonas aeruginosa (strain PA7) GN=coaB PE=4 SV=1
49 : A3L5S4_PSEAI 0.86 0.93 1 44 39 82 44 0 0 83 A3L5S4 Coat protein B of bacteriophage Pf1 OS=Pseudomonas aeruginosa C3719 GN=PACG_05560 PE=4 SV=1
50 : K1CBE1_PSEAI 0.86 0.98 1 44 38 81 44 0 0 82 K1CBE1 Coat protein B of bacteriophage Pf1 OS=Pseudomonas aeruginosa CI27 GN=coaB PE=4 SV=1
51 : Q02J21_PSEAB 0.86 0.98 1 44 38 81 44 0 0 82 Q02J21 Coat protein B of bacteriophage Pf1 OS=Pseudomonas aeruginosa (strain UCBPP-PA14) GN=coaB PE=4 SV=1
52 : Q56VP2_BPPF1 0.86 0.98 1 44 38 81 44 0 0 82 Q56VP2 PA0723 OS=Pseudomonas phage Pf1 PE=4 SV=1
53 : Q58CI2_PSEAI 0.86 0.93 1 44 39 82 44 0 0 83 Q58CI2 Coat protein B OS=Pseudomonas aeruginosa GN=pa1310007 PE=4 SV=1
54 : S0IX08_PSEAI 0.86 0.98 1 44 38 81 44 0 0 82 S0IX08 Capsid protein G8P OS=Pseudomonas aeruginosa PA14 GN=CIA_01104 PE=4 SV=1
55 : U8IIE7_PSEAI 0.86 0.98 1 44 38 81 44 0 0 82 U8IIE7 Capsid protein G8P OS=Pseudomonas aeruginosa BL15 GN=Q069_03822 PE=4 SV=1
56 : U8IQR3_PSEAI 0.86 0.98 1 44 38 81 44 0 0 82 U8IQR3 Capsid protein G8P OS=Pseudomonas aeruginosa BL16 GN=Q070_00031 PE=4 SV=1
57 : U8JGN2_PSEAI 0.86 0.98 1 44 38 81 44 0 0 82 U8JGN2 Capsid protein G8P OS=Pseudomonas aeruginosa BL10 GN=Q064_04575 PE=4 SV=1
58 : U8N3C2_PSEAI 0.86 0.98 1 44 38 81 44 0 0 82 U8N3C2 Capsid protein G8P OS=Pseudomonas aeruginosa BWHPSA027 GN=Q040_03356 PE=4 SV=1
59 : U8QP15_PSEAI 0.86 0.98 1 44 38 81 44 0 0 82 U8QP15 Capsid protein G8P OS=Pseudomonas aeruginosa BWHPSA021 GN=Q034_03744 PE=4 SV=1
60 : U8RS77_PSEAI 0.86 0.98 1 44 38 81 44 0 0 82 U8RS77 Capsid protein G8P OS=Pseudomonas aeruginosa BWHPSA019 GN=Q032_02056 PE=4 SV=1
61 : U8S150_PSEAI 0.86 0.98 1 44 38 81 44 0 0 82 U8S150 Capsid protein G8P OS=Pseudomonas aeruginosa BWHPSA019 GN=Q032_01573 PE=4 SV=1
62 : U8SSH9_PSEAI 0.86 0.98 1 44 38 81 44 0 0 82 U8SSH9 Capsid protein G8P OS=Pseudomonas aeruginosa BWHPSA014 GN=Q027_04845 PE=4 SV=1
63 : U8UD51_PSEAI 0.86 0.98 1 44 38 81 44 0 0 82 U8UD51 Capsid protein G8P OS=Pseudomonas aeruginosa BWHPSA012 GN=Q025_04477 PE=4 SV=1
64 : U8W830_PSEAI 0.86 0.98 1 44 38 81 44 0 0 82 U8W830 Capsid protein G8P OS=Pseudomonas aeruginosa BWHPSA004 GN=Q017_05787 PE=4 SV=1
65 : U9KQG1_PSEAI 0.86 0.98 1 44 38 81 44 0 0 82 U9KQG1 Capsid protein G8P OS=Pseudomonas aeruginosa BL01 GN=Q055_04424 PE=4 SV=1
66 : U9MXR8_PSEAI 0.86 0.98 1 44 38 81 44 0 0 82 U9MXR8 Capsid protein G8P OS=Pseudomonas aeruginosa BWHPSA008 GN=Q021_02324 PE=4 SV=1
67 : V9UBV9_PSEAI 0.86 0.98 1 44 38 81 44 0 0 82 V9UBV9 Coat protein B of bacteriophage Pf1 OS=Pseudomonas aeruginosa SCV20265 GN=SCV20265_5317 PE=4 SV=1
68 : U9G4N8_PSEAI 0.67 0.83 7 42 44 79 36 0 0 82 U9G4N8 Capsid protein G8P OS=Pseudomonas aeruginosa BL21 GN=Q075_05907 PE=4 SV=1
69 : B2UBW0_RALPJ 0.47 0.74 2 44 39 81 43 0 0 82 B2UBW0 Uncharacterized protein (Precursor) OS=Ralstonia pickettii (strain 12J) GN=Rpic_1392 PE=4 SV=1
## ALIGNMENTS 1 - 69
SeqNo PDBNo AA STRUCTURE BP1 BP2 ACC NOCC VAR ....:....1....:....2....:....3....:....4....:....5....:....6....:....7
1 2 A V 0 0 118 68 0 VVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVV
2 3 A I > + 0 0 84 69 0 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII I
3 4 A D T >> + 0 0 46 69 1 DDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDGDDDDDDDDDDDDDDDDDDDDD D
4 5 A T H 3> S+ 0 0 58 69 0 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT T
5 6 A S H <> S+ 0 0 66 69 16 SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS T
6 7 A A H <> S+ 0 0 67 69 8 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAASAAASAAAAAAAAAAAAAA A
7 8 A V H X S+ 0 0 42 70 16 VVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVA
8 9 A E H X S+ 0 0 49 70 25 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEAT
9 10 A S H X S+ 0 0 59 70 81 SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSQAAAQAAAAAAAAAAAAAALT
10 11 A A H X S+ 0 0 49 70 13 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAS
11 12 A I H <>S+ 0 0 39 70 5 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIILI
12 13 A T H <5S+ 0 0 52 70 8 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAT
13 14 A D H X5S+ 0 0 47 70 50 DDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDEEEDEEEEEEEEEEEEEEVS
14 15 A G H X5S+ 0 0 56 70 0 GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG
15 16 A Q H >5S+ 0 0 59 70 72 QQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQKKKKKKKKKKKKKKKKKKKDG
16 17 A G H >X S+ 0 0 53 70 8 LLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLI
33 34 A A H 3X S+ 0 0 49 70 20 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAL
34 35 A V H 3X S+ 0 0 51 70 0 VVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVV
35 36 A A H