Complet list of 1zjq hssp file
Complete list of 1zjq.hssp file
HSSP HOMOLOGY DERIVED SECONDARY STRUCTURE OF PROTEINS , VERSION 2.0 2011
PDBID 1ZJQ
THRESHOLD according to: t(L)=(290.15 * L ** -0.562) + 5
REFERENCE Sander C., Schneider R. : Database of homology-derived protein structures. Proteins, 9:56-68 (1991).
CONTACT Maintained at http://www.cmbi.ru.nl/ by Maarten L. Hekkelman
DATE file generated on 2014-05-14
HEADER TOXIN 30-APR-05 1ZJQ
COMPND MOL_ID: 1; MOLECULE: JINGZHAOTOXIN-VII; CHAIN: A
SOURCE MOL_ID: 1; ORGANISM_SCIENTIFIC: CHILOBRACHYS JINGZHAO; ORGANISM_TAXID:
AUTHOR Z.LIAO
DBREF 1ZJQ A 1 34 PDB 1ZJQ 1ZJQ 1 34
SEQLENGTH 34
NCHAIN 1 chain(s) in 1ZJQ data set
NALIGN 58
NOTATION : ID: EMBL/SWISSPROT identifier of the aligned (homologous) protein
NOTATION : STRID: if the 3-D structure of the aligned protein is known, then STRID is the Protein Data Bank identifier as taken
NOTATION : from the database reference or DR-line of the EMBL/SWISSPROT entry
NOTATION : %IDE: percentage of residue identity of the alignment
NOTATION : %SIM (%WSIM): (weighted) similarity of the alignment
NOTATION : IFIR/ILAS: first and last residue of the alignment in the test sequence
NOTATION : JFIR/JLAS: first and last residue of the alignment in the alignend protein
NOTATION : LALI: length of the alignment excluding insertions and deletions
NOTATION : NGAP: number of insertions and deletions in the alignment
NOTATION : LGAP: total length of all insertions and deletions
NOTATION : LSEQ2: length of the entire sequence of the aligned protein
NOTATION : ACCNUM: SwissProt accession number
NOTATION : PROTEIN: one-line description of aligned protein
NOTATION : SeqNo,PDBNo,AA,STRUCTURE,BP1,BP2,ACC: sequential and PDB residue numbers, amino acid (lower case = Cys), secondary
NOTATION : structure, bridge partners, solvent exposure as in DSSP (Kabsch and Sander, Biopolymers 22, 2577-2637(1983)
NOTATION : VAR: sequence variability on a scale of 0-100 as derived from the NALIGN alignments
NOTATION : pair of lower case characters (AvaK) in the alignend sequence bracket a point of insertion in this sequence
NOTATION : dots (....) in the alignend sequence indicate points of deletion in this sequence
NOTATION : SEQUENCE PROFILE: relative frequency of an amino acid type at each position. Asx and Glx are in their
NOTATION : acid/amide form in proportion to their database frequencies
NOTATION : NOCC: number of aligned sequences spanning this position (including the test sequence)
NOTATION : NDEL: number of sequences with a deletion in the test protein at this position
NOTATION : NINS: number of sequences with an insertion in the test protein at this position
NOTATION : ENTROPY: entropy measure of sequence variability at this position
NOTATION : RELENT: relative entropy, i.e. entropy normalized to the range 0-100
NOTATION : WEIGHT: conservation weight
## PROTEINS : identifier and alignment statistics
NR. ID STRID %IDE %WSIM IFIR ILAS JFIR JLAS LALI NGAP LGAP LSEQ2 ACCNUM PROTEIN
1 : JZT7A_CHIGU 2AAP 1.00 1.00 1 34 30 63 34 0 0 66 P0C2X7 U1-theraphotoxin-Cj1a OS=Chilobrachys guangxiensis PE=1 SV=2
2 : JZT7B_CHIGU 1.00 1.00 1 34 30 63 34 0 0 66 B1P1A4 U1-theraphotoxin-Cj1a OS=Chilobrachys guangxiensis PE=1 SV=1
3 : B1P1C3_CHIGU 0.97 0.97 1 34 30 63 34 0 0 66 B1P1C3 Cystine knot toxin OS=Chilobrachys guangxiensis GN=JZTX-9 PE=3 SV=1
4 : JZT10_CHIGU 0.97 1.00 1 34 30 63 34 0 0 66 B1P1C2 U1-theraphotoxin-Cj1b OS=Chilobrachys guangxiensis PE=2 SV=1
5 : JZ12A_CHIGU 0.94 0.97 1 34 30 63 34 0 0 66 B1P1C4 U1-theraphotoxin-Cj1d OS=Chilobrachys guangxiensis PE=1 SV=1
6 : JZ12B_CHIGU 0.94 0.97 1 34 30 63 34 0 0 66 B1P1C6 U1-theraphotoxin-Cj1d OS=Chilobrachys guangxiensis PE=1 SV=1
7 : JZT49_CHIGU 0.82 0.85 1 34 30 63 34 0 0 75 B1P1C7 U9-theraphotoxin-Cj1a OS=Chilobrachys guangxiensis PE=1 SV=1
8 : TX3_SELPU 0.82 0.88 1 33 30 62 33 0 0 65 P0DM67 Toxin OAIP 3 OS=Selenotypus plumipes PE=1 SV=1
9 : HN325_HAPHA 0.61 0.65 8 34 1 31 31 2 4 31 P0CH71 Hainantoxin F3-25.85 OS=Haplopelma hainanum PE=1 SV=1
10 : TXL1_HAPSC 1QK7 0.60 0.63 9 34 51 80 30 2 4 83 Q86C51 U5-theraphotoxin-Hh1a OS=Haplopelma schmidti PE=1 SV=1
11 : TXLA1_HAPSC 0.60 0.63 9 34 51 80 30 2 4 83 B3FIS0 U5-theraphotoxin-Hh1c OS=Haplopelma schmidti PE=2 SV=1
12 : TXLA3_HAPSC 0.60 0.63 9 34 51 80 30 2 4 83 B3FIS2 Lectin SHL-Ia3 OS=Haplopelma schmidti PE=2 SV=1
13 : TXLA4_HAPSC 0.60 0.63 9 34 51 80 30 2 4 83 B3FIS3 Lectin SHL-Ia4 OS=Haplopelma schmidti PE=2 SV=1
14 : TXLA5_HAPSC 0.60 0.63 9 34 51 80 30 2 4 83 B3FIS4 Lectin SHL-Ia5 OS=Haplopelma schmidti PE=2 SV=1
15 : TXLA6_HAPSC 0.60 0.63 9 34 51 80 30 2 4 83 B3FIS5 Lectin SHL-Ia6 OS=Haplopelma schmidti PE=2 SV=1
16 : TXLA2_HAPSC 0.57 0.63 9 34 51 80 30 2 4 83 B3FIS1 U5-theraphotoxin-Hh1d OS=Haplopelma schmidti PE=2 SV=1
17 : JZ13A_CHIGU 0.56 0.71 2 34 31 63 34 2 2 66 B1P1C9 U10-theraphotoxin-Cj1a OS=Chilobrachys guangxiensis PE=1 SV=1
18 : JZ13B_CHIGU 0.56 0.71 2 34 31 63 34 2 2 66 B1P1D0 U10-theraphotoxin-Cj1a OS=Chilobrachys guangxiensis PE=2 SV=1
19 : JZ13C_CHIGU 0.56 0.71 2 34 31 63 34 2 2 66 B1P1C8 U10-theraphotoxin-Cj1a OS=Chilobrachys guangxiensis PE=2 SV=1
20 : TXLB2_HAPSC 0.56 0.61 1 34 50 80 36 3 7 83 B3FIS7 Lectin SHL-Ib2 OS=Haplopelma schmidti PE=2 SV=1
21 : H8D01_HAPHA 0.53 0.68 1 34 53 84 34 1 2 87 D2Y246 Hainantoxin-VIII-4 OS=Haplopelma hainanum PE=2 SV=1
22 : B5U1J9_HAPSC 0.50 0.65 1 34 53 84 34 1 2 87 B5U1J9 HWTX-III OS=Haplopelma schmidti PE=3 SV=1
23 : H8A01_HAPHA 0.50 0.65 1 34 53 84 34 1 2 87 D2Y240 Hainantoxin-VIII OS=Haplopelma hainanum PE=1 SV=1
24 : H8A02_HAPHA 0.50 0.65 1 34 53 84 34 1 2 87 D2Y241 Hainantoxin-VIII.2 OS=Haplopelma hainanum PE=1 SV=1
25 : H8A03_HAPHA 0.50 0.65 1 34 53 84 34 1 2 87 D2Y242 Hainantoxin-VIII.3 OS=Haplopelma hainanum PE=1 SV=1
26 : H8A04_HAPHA 0.50 0.65 1 34 53 84 34 1 2 87 D2Y243 Hainantoxin-VIII.4 OS=Haplopelma hainanum PE=1 SV=1
27 : H8A05_HAPHA 0.50 0.65 1 34 53 84 34 1 2 87 D2Y248 Hainantoxin-VIII.5 OS=Haplopelma hainanum PE=1 SV=1
28 : H8A06_HAPHA 0.50 0.65 1 34 53 84 34 1 2 87 D2Y249 Hainantoxin-VIII.6 OS=Haplopelma hainanum PE=1 SV=1
29 : H8A07_HAPHA 0.50 0.65 1 34 53 84 34 1 2 87 D2Y250 Hainantoxin-VIII.7 OS=Haplopelma hainanum PE=1 SV=1
30 : H8A08_HAPHA 0.50 0.65 1 34 53 84 34 1 2 87 D2Y2G3 Hainantoxin-VIII.8 OS=Haplopelma hainanum PE=1 SV=1
31 : H8A09_HAPHA 0.50 0.65 1 34 53 84 34 1 2 87 D2Y2G4 Hainantoxin-VIII.9 OS=Haplopelma hainanum PE=1 SV=1
32 : H8A10_HAPHA 0.50 0.65 1 34 53 84 34 1 2 87 D2Y2G5 Hainantoxin-VIII.10 OS=Haplopelma hainanum PE=1 SV=1
33 : H8A11_HAPHA 0.50 0.65 1 34 53 84 34 1 2 87 D2Y2G6 Hainantoxin-VIII.11 OS=Haplopelma hainanum PE=1 SV=1
34 : H8A12_HAPHA 0.50 0.65 1 34 53 84 34 1 2 87 D2Y2M1 Hainantoxin-VIII.12 OS=Haplopelma hainanum PE=1 SV=1
35 : H8A13_HAPHA 0.50 0.65 1 34 53 84 34 1 2 87 D2Y2M4 Hainantoxin-VIII.13 OS=Haplopelma hainanum PE=1 SV=1
36 : H8A14_HAPHA 0.50 0.65 1 34 53 84 34 1 2 87 D2Y2M5 Hainantoxin-VIII.14 OS=Haplopelma hainanum PE=1 SV=1
37 : H8A15_HAPHA 0.50 0.65 1 34 53 84 34 1 2 87 D2Y2M6 Hainantoxin-VIII.15 OS=Haplopelma hainanum PE=1 SV=1
38 : H8A16_HAPHA 0.50 0.65 1 34 53 84 34 1 2 87 D2Y2M8 Hainantoxin-VIII.16 OS=Haplopelma hainanum PE=1 SV=1
39 : H8A17_HAPHA 0.50 0.65 1 34 53 84 34 1 2 87 D2Y2N0 Hainantoxin-VIII.17 OS=Haplopelma hainanum PE=1 SV=1
40 : H8A18_HAPHA 0.50 0.65 1 34 53 84 34 1 2 87 D2Y2N1 Hainantoxin-VIII.18 OS=Haplopelma hainanum PE=1 SV=1
41 : H8A19_HAPHA 0.50 0.65 1 34 53 84 34 1 2 87 D2Y2N4 Hainantoxin-VIII.19 OS=Haplopelma hainanum PE=1 SV=1
42 : H8B01_HAPHA 0.50 0.65 1 34 53 84 34 1 2 87 D2Y244 Hainantoxin-VIII-2 OS=Haplopelma hainanum PE=2 SV=1
43 : H8F01_HAPHA 0.50 0.62 1 34 53 84 34 1 2 87 D2Y2G7 Hainantoxin-VIII-6 OS=Haplopelma hainanum PE=2 SV=1
44 : H8H01_HAPHA 0.50 0.68 1 34 53 84 34 1 2 87 D2Y2G9 Hainantoxin-VIII-8 OS=Haplopelma hainanum PE=2 SV=1
45 : H8I01_HAPHA 0.50 0.68 1 34 53 84 34 1 2 87 D2Y2M0 Hainantoxin-VIII-9 OS=Haplopelma hainanum PE=3 SV=1
46 : H8K01_HAPHA 0.50 0.65 1 34 53 84 34 1 2 87 D2Y2M3 Hainantoxin-VIII-11 OS=Haplopelma hainanum PE=3 SV=1
47 : H8M01_HAPHA 0.50 0.65 1 34 53 84 34 1 2 87 D2Y2N2 Hainantoxin-VIII-13 OS=Haplopelma hainanum PE=3 SV=1
48 : H8N01_HAPHA 0.50 0.65 1 34 53 84 34 1 2 87 D2Y2N3 Hainantoxin-VIII-14 OS=Haplopelma hainanum PE=3 SV=1
49 : H8P01_HAPHA 0.50 0.62 1 34 53 84 34 1 2 87 D2Y2N6 Hainantoxin-VIII-16 OS=Haplopelma hainanum PE=3 SV=1
50 : H8Q01_HAPHA 0.50 0.65 1 34 53 84 34 1 2 87 D2Y2N7 Hainantoxin-VIII-17 OS=Haplopelma hainanum PE=3 SV=1
51 : HN423_HAPHA 0.50 0.65 1 34 1 32 34 1 2 32 P0CH72 Hainantoxin F4-23.43 OS=Haplopelma hainanum PE=1 SV=1
52 : TXH3_HAPSC 0.50 0.65 1 34 53 84 34 1 2 87 P61103 U2-theraphotoxin-Hh1a OS=Haplopelma schmidti PE=1 SV=2
53 : H8C01_HAPHA 0.47 0.62 1 34 43 74 34 1 2 77 D2Y245 Hainantoxin-VIII-3 (Fragment) OS=Haplopelma hainanum PE=2 SV=2
54 : H8E01_HAPHA 0.47 0.65 1 34 53 84 34 1 2 87 D2Y247 Hainantoxin-VIII-5 OS=Haplopelma hainanum PE=2 SV=1
55 : H8G01_HAPHA 0.47 0.62 1 34 53 84 34 1 2 87 D2Y2G8 Hainantoxin-VIII-7 OS=Haplopelma hainanum PE=2 SV=1
56 : H8J01_HAPHA 0.47 0.62 1 34 53 84 34 1 2 87 D2Y2M2 Hainantoxin-VIII-10 OS=Haplopelma hainanum PE=3 SV=1
57 : H8L01_HAPHA 0.47 0.65 1 34 53 84 34 1 2 87 D2Y2M9 Hainantoxin-VIII-12 OS=Haplopelma hainanum PE=3 SV=1
58 : H8O01_HAPHA 0.47 0.65 1 34 53 84 34 1 2 87 D2Y2N5 Hainantoxin-VIII-15 OS=Haplopelma hainanum PE=3 SV=1
## ALIGNMENTS 1 - 58
SeqNo PDBNo AA STRUCTURE BP1 BP2 ACC NOCC VAR ....:....1....:....2....:....3....:....4....:....5....:....6....:....7
1 1 A G 0 0 134 48 46 GGGGGGGE GDDDDDDDDDDDDDDDDDDDDDDNDDDDDDDDDDDDDDD
2 2 A a - 0 0 88 51 0 CCCCCCCC CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
3 3 A G + 0 0 8 51 53 GGGGGGGG GGGFAAAAAAAAAAAAAAAAAAAAAAAAAAAAVAAAAAAAAA
4 4 A G S S- 0 0 23 51 25 GGGGGGLG EEEGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG
5 5 A L S S+ 0 0 104 51 54 LLLLLLLL FFFYYYYYYYYYYYYYYYYYYYYYYYYYYYYHYYYYYYYYYY
6 6 A M S S+ 0 0 134 51 5 MMMMMMMM MMMKMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMM
7 7 A A - 0 0 27 50 82 AADADDDT WWW.RRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRR
8 8 A G + 0 0 47 51 68 GGGGGGARG KKK.EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE
9 9 A b > + 0 0 14 59 0 CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
10 10 A D T 3 S+ 0 0 133 59 93 DDDGDDDDLLLLLLLLGGGDKKKKKKKKKKKKKKKKKKKKKKKNEKKKKKKKKKKKKK
11 11 A G T 3 S- 0 0 35 59 62 GGGGGGGGggggggggAAAYGEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE
12 12 A K S < S+ 0 0 179 17 0 KKKKKKKKkkkkkkkk..........................................
13 13 A S + 0 0 96 20 62 SSSSSSSTCCCCCCCCGGG.......................................
14 14 A T - 0 0 60 58 69 TTTTTTTTDDDDDDDDKKK.KKKKKKKKKKKKKKKKKKKKKKKKKKEKKKKKKKKKKK
15 15 A F - 0 0 183 59 54 FFFFFFFFyyyyyyyypppyLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLL
16 16 A c - 0 0 15 59 3 CCCCCCCCccccccccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCRCCC
17 17 A a S S- 0 0 48 59 0 CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
18 18 A S S S+ 0 0 97 59 2 SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSNSSSS
19 19 A G S S+ 0 0 55 59 0 GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG
20 20 A Y E -A 31 0A 86 59 7 YYYYFFYMYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYY
21 21 A N E -A 30 0A 90 59 74 NNNNNNNNVVVVVVVVDDDVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVV
22 22 A b E -A 29 0A 27 59 3 CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCRCCCCC
23 23 A S E >> -A 28 0A 20 59 5 SSSSSSSSSSSSSSSPSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSPS
24 24 A P T 45S+ 0 0 110 59 72 PPPPPPPPRRRRRRRRPPPPSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
25 25 A T T 45S+ 0 0 123 59 87 TTTTTTTTTTTTTTTTTTTTRRRRRRRRRRRRRRRRRRRRRRRRRRRRRGRRRRRRRR
26 26 A W T 45S- 0 0 151 59 0 WWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWW
27 27 A K T <5S+ 0 0 114 59 0 KKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKK
28 28 A W E