Complet list of 1zaq hssp file
Complete list of 1zaq.hssp file
HSSP HOMOLOGY DERIVED SECONDARY STRUCTURE OF PROTEINS , VERSION 2.0 2011
PDBID 1ZAQ
THRESHOLD according to: t(L)=(290.15 * L ** -0.562) + 5
REFERENCE Sander C., Schneider R. : Database of homology-derived protein structures. Proteins, 9:56-68 (1991).
CONTACT Maintained at http://www.cmbi.ru.nl/ by Maarten L. Hekkelman
DATE file generated on 2014-05-14
HEADER BLOOD COAGULATION 09-SEP-95 1ZAQ
COMPND MOL_ID: 1; MOLECULE: THROMBOMODULIN; CHAIN: A; SYNONYM: TM4; ENGINEERE
SOURCE MOL_ID: 1; ORGANISM_SCIENTIFIC: HOMO SAPIENS; ORGANISM_COMMON: HUMAN;
AUTHOR D.P.MEININGER,E.A.KOMIVES
DBREF 1ZAQ A 1 44 UNP P07204 TRBM_HUMAN 364 407
SEQLENGTH 44
NCHAIN 1 chain(s) in 1ZAQ data set
NALIGN 73
NOTATION : ID: EMBL/SWISSPROT identifier of the aligned (homologous) protein
NOTATION : STRID: if the 3-D structure of the aligned protein is known, then STRID is the Protein Data Bank identifier as taken
NOTATION : from the database reference or DR-line of the EMBL/SWISSPROT entry
NOTATION : %IDE: percentage of residue identity of the alignment
NOTATION : %SIM (%WSIM): (weighted) similarity of the alignment
NOTATION : IFIR/ILAS: first and last residue of the alignment in the test sequence
NOTATION : JFIR/JLAS: first and last residue of the alignment in the alignend protein
NOTATION : LALI: length of the alignment excluding insertions and deletions
NOTATION : NGAP: number of insertions and deletions in the alignment
NOTATION : LGAP: total length of all insertions and deletions
NOTATION : LSEQ2: length of the entire sequence of the aligned protein
NOTATION : ACCNUM: SwissProt accession number
NOTATION : PROTEIN: one-line description of aligned protein
NOTATION : SeqNo,PDBNo,AA,STRUCTURE,BP1,BP2,ACC: sequential and PDB residue numbers, amino acid (lower case = Cys), secondary
NOTATION : structure, bridge partners, solvent exposure as in DSSP (Kabsch and Sander, Biopolymers 22, 2577-2637(1983)
NOTATION : VAR: sequence variability on a scale of 0-100 as derived from the NALIGN alignments
NOTATION : pair of lower case characters (AvaK) in the alignend sequence bracket a point of insertion in this sequence
NOTATION : dots (....) in the alignend sequence indicate points of deletion in this sequence
NOTATION : SEQUENCE PROFILE: relative frequency of an amino acid type at each position. Asx and Glx are in their
NOTATION : acid/amide form in proportion to their database frequencies
NOTATION : NOCC: number of aligned sequences spanning this position (including the test sequence)
NOTATION : NDEL: number of sequences with a deletion in the test protein at this position
NOTATION : NINS: number of sequences with an insertion in the test protein at this position
NOTATION : ENTROPY: entropy measure of sequence variability at this position
NOTATION : RELENT: relative entropy, i.e. entropy normalized to the range 0-100
NOTATION : WEIGHT: conservation weight
## PROTEINS : identifier and alignment statistics
NR. ID STRID %IDE %WSIM IFIR ILAS JFIR JLAS LALI NGAP LGAP LSEQ2 ACCNUM PROTEIN
1 : B3KVV1_HUMAN 1.00 1.00 1 44 346 389 44 0 0 557 B3KVV1 cDNA FLJ41563 fis, clone CTONG1000341, highly similar to THROMBOMODULIN OS=Homo sapiens PE=2 SV=1
2 : H2QK24_PANTR 1.00 1.00 1 44 364 407 44 0 0 575 H2QK24 Thrombomodulin OS=Pan troglodytes GN=THBD PE=2 SV=1
3 : K7CPI1_PANTR 1.00 1.00 1 44 420 463 44 0 0 631 K7CPI1 Thrombomodulin OS=Pan troglodytes GN=THBD PE=2 SV=1
4 : TRBM_HUMAN 1DX5 1.00 1.00 1 44 364 407 44 0 0 575 P07204 Thrombomodulin OS=Homo sapiens GN=THBD PE=1 SV=2
5 : TRBM_SAISC 1.00 1.00 1 44 364 407 44 0 0 575 Q71U07 Thrombomodulin OS=Saimiri sciureus GN=THBD PE=3 SV=1
6 : F7C9T2_MACMU 0.98 1.00 1 44 359 402 44 0 0 570 F7C9T2 Thrombomodulin OS=Macaca mulatta GN=THBD PE=2 SV=1
7 : G7PH40_MACFA 0.98 1.00 1 44 359 402 44 0 0 538 G7PH40 Thrombomodulin OS=Macaca fascicularis GN=EGM_02382 PE=4 SV=1
8 : H2P167_PONAB 0.93 0.98 1 44 210 253 44 0 0 421 H2P167 Uncharacterized protein (Fragment) OS=Pongo abelii GN=THBD PE=4 SV=1
9 : F6YV55_CALJA 0.82 0.93 1 44 363 406 44 0 0 571 F6YV55 Uncharacterized protein OS=Callithrix jacchus GN=THBD PE=4 SV=1
10 : U3DW26_CALJA 0.82 0.93 1 44 363 406 44 0 0 571 U3DW26 Thrombomodulin OS=Callithrix jacchus GN=THBD PE=2 SV=1
11 : D2HSG5_AILME 0.77 0.86 1 44 364 407 44 0 0 580 D2HSG5 Uncharacterized protein (Fragment) OS=Ailuropoda melanoleuca GN=LOC100467359 PE=4 SV=1
12 : F1PB37_CANFA 0.77 0.93 1 44 365 408 44 0 0 578 F1PB37 Thrombomodulin OS=Canis familiaris GN=THBD PE=4 SV=1
13 : G3UIR2_LOXAF 0.77 0.86 1 44 365 408 44 0 0 576 G3UIR2 Uncharacterized protein OS=Loxodonta africana GN=THBD PE=4 SV=1
14 : TRBM_CANFA 0.77 0.93 1 44 365 408 44 0 0 578 Q5W7P8 Thrombomodulin OS=Canis familiaris GN=THBD PE=2 SV=1
15 : I3N148_SPETR 0.75 0.89 1 44 364 407 44 0 0 577 I3N148 Uncharacterized protein OS=Spermophilus tridecemlineatus GN=THBD PE=4 SV=1
16 : Q8HZ48_RABIT 0.75 0.86 1 44 365 407 44 1 1 580 Q8HZ48 Thrombomodulin (Precursor) OS=Oryctolagus cuniculus GN=Thbd PE=2 SV=2
17 : F6PNE7_HORSE 0.74 0.88 11 44 1 34 34 0 0 203 F6PNE7 Uncharacterized protein (Fragment) OS=Equus caballus GN=THBD PE=4 SV=1
18 : B3STX8_PIG 0.73 0.89 1 44 364 407 44 0 0 579 B3STX8 Thrombomodulin OS=Sus scrofa PE=2 SV=1
19 : F1SAT9_PIG 0.73 0.89 1 44 364 407 44 0 0 579 F1SAT9 Uncharacterized protein OS=Sus scrofa GN=THBD PE=4 SV=1
20 : H0XR13_OTOGA 0.73 0.84 1 44 361 404 44 0 0 577 H0XR13 Uncharacterized protein OS=Otolemur garnettii GN=THBD PE=4 SV=1
21 : L5JX78_PTEAL 0.70 0.89 1 44 305 348 44 0 0 517 L5JX78 Thrombomodulin OS=Pteropus alecto GN=PAL_GLEAN10023993 PE=4 SV=1
22 : L8Y9T9_TUPCH 0.70 0.84 1 44 326 369 44 0 0 533 L8Y9T9 Thrombomodulin OS=Tupaia chinensis GN=TREES_T100008155 PE=4 SV=1
23 : M3WF86_FELCA 0.70 0.82 1 44 354 397 44 0 0 570 M3WF86 Uncharacterized protein OS=Felis catus GN=THBD PE=4 SV=1
24 : G9KT75_MUSPF 0.68 0.86 1 44 364 407 44 0 0 567 G9KT75 Thrombomodulin (Fragment) OS=Mustela putorius furo PE=2 SV=1
25 : U6D9R7_NEOVI 0.68 0.86 1 44 357 400 44 0 0 480 U6D9R7 Thrombomodulin (Fragment) OS=Neovison vison GN=TRBM PE=2 SV=1
26 : F1N6M2_BOVIN 0.66 0.82 1 44 360 403 44 0 0 578 F1N6M2 Thrombomodulin OS=Bos taurus GN=THBD PE=4 SV=2
27 : G5CBC6_HETGA 0.66 0.75 1 44 351 394 44 0 0 563 G5CBC6 Thrombomodulin OS=Heterocephalus glaber GN=GW7_00713 PE=4 SV=1
28 : O35370_RAT 0.66 0.86 1 44 363 406 44 0 0 577 O35370 Protein Thbd OS=Rattus norvegicus GN=Thbd PE=2 SV=1
29 : P97883_RAT 0.66 0.86 1 44 247 290 44 0 0 461 P97883 Thrombomdulin (Fragment) OS=Rattus norvegicus PE=2 SV=1
30 : TRBM_BOVIN 0.66 0.82 1 44 138 181 44 0 0 356 P06579 Thrombomodulin (Fragment) OS=Bos taurus GN=THBD PE=2 SV=1
31 : L8J0V7_9CETA 0.64 0.82 1 44 100 143 44 0 0 318 L8J0V7 Thrombomodulin (Fragment) OS=Bos mutus GN=M91_21305 PE=4 SV=1
32 : Q543W3_MOUSE 0.64 0.84 1 44 363 406 44 0 0 577 Q543W3 Thbd protein OS=Mus musculus GN=Thbd PE=2 SV=1
33 : Q8BJB5_MOUSE 0.64 0.84 1 44 363 406 44 0 0 491 Q8BJB5 Putative uncharacterized protein (Fragment) OS=Mus musculus PE=2 SV=1
34 : TRBM_MOUSE 0.64 0.84 1 44 363 406 44 0 0 577 P15306 Thrombomodulin OS=Mus musculus GN=Thbd PE=1 SV=1
35 : W5P4Y3_SHEEP 0.64 0.82 1 44 337 380 44 0 0 555 W5P4Y3 Uncharacterized protein OS=Ovis aries GN=THBD PE=4 SV=1
36 : G1Q0S6_MYOLU 0.62 0.79 1 44 363 409 47 1 3 581 G1Q0S6 Uncharacterized protein OS=Myotis lucifugus GN=THBD PE=4 SV=1
37 : L5LFZ0_MYODS 0.62 0.79 1 44 56 102 47 1 3 272 L5LFZ0 Thrombomodulin OS=Myotis davidii GN=MDA_GLEAN10009781 PE=4 SV=1
38 : S7MCK3_MYOBR 0.60 0.74 1 44 56 102 47 1 3 271 S7MCK3 Thrombomodulin OS=Myotis brandtii GN=D623_10004474 PE=4 SV=1
39 : H0W956_CAVPO 0.59 0.80 1 44 205 248 44 0 0 323 H0W956 Uncharacterized protein (Fragment) OS=Cavia porcellus GN=CD93 PE=4 SV=1
40 : D2H4M4_AILME 0.53 0.63 4 41 219 256 38 0 0 713 D2H4M4 Putative uncharacterized protein (Fragment) OS=Ailuropoda melanoleuca GN=PANDA_004760 PE=4 SV=1
41 : D3ZN06_RAT 0.53 0.63 4 41 273 310 38 0 0 764 D3ZN06 CD248 antigen, endosialin (Predicted) OS=Rattus norvegicus GN=Cd248 PE=4 SV=1
42 : E1BC38_BOVIN 0.53 0.63 4 41 273 310 38 0 0 761 E1BC38 Uncharacterized protein OS=Bos taurus GN=CD248 PE=4 SV=2
43 : G1MFE7_AILME 0.53 0.63 4 41 219 256 38 0 0 697 G1MFE7 Uncharacterized protein (Fragment) OS=Ailuropoda melanoleuca GN=CD248 PE=4 SV=1
44 : G1PQC4_MYOLU 0.53 0.66 4 41 148 185 38 0 0 495 G1PQC4 Uncharacterized protein (Fragment) OS=Myotis lucifugus GN=CD248 PE=4 SV=1
45 : G1SLG2_RABIT 0.53 0.63 4 41 276 313 38 0 0 663 G1SLG2 Uncharacterized protein OS=Oryctolagus cuniculus GN=CD248 PE=4 SV=1
46 : G5BWX5_HETGA 0.53 0.63 4 41 273 310 38 0 0 726 G5BWX5 Endosialin OS=Heterocephalus glaber GN=GW7_07193 PE=4 SV=1
47 : H0XLF7_OTOGA 0.53 0.63 4 41 273 310 38 0 0 756 H0XLF7 Uncharacterized protein OS=Otolemur garnettii GN=CD248 PE=4 SV=1
48 : I3N8Z2_SPETR 0.53 0.63 4 41 205 242 38 0 0 688 I3N8Z2 Uncharacterized protein (Fragment) OS=Spermophilus tridecemlineatus GN=CD248 PE=4 SV=1
49 : J9P4H7_CANFA 0.53 0.63 4 41 273 310 38 0 0 721 J9P4H7 Uncharacterized protein OS=Canis familiaris GN=CD248 PE=4 SV=1
50 : K7GPF5_PIG 0.53 0.63 4 41 273 310 38 0 0 769 K7GPF5 Uncharacterized protein OS=Sus scrofa GN=CD248 PE=4 SV=1
51 : L5KNI9_PTEAL 0.53 0.63 4 41 273 310 38 0 0 770 L5KNI9 Endosialin OS=Pteropus alecto GN=PAL_GLEAN10011337 PE=4 SV=1
52 : L8I5X3_9CETA 0.53 0.63 4 41 201 238 38 0 0 707 L8I5X3 Endosialin (Fragment) OS=Bos mutus GN=M91_13997 PE=4 SV=1
53 : M3X8U6_FELCA 0.53 0.63 4 41 149 186 38 0 0 637 M3X8U6 Uncharacterized protein (Fragment) OS=Felis catus GN=CD248 PE=4 SV=1
54 : U6D696_NEOVI 0.53 0.63 4 41 14 51 38 0 0 139 U6D696 Endosialin (Fragment) OS=Neovison vison GN=CD248 PE=2 SV=1
55 : W5P1J0_SHEEP 0.53 0.63 4 41 268 305 38 0 0 753 W5P1J0 Uncharacterized protein (Fragment) OS=Ovis aries GN=CD248 PE=4 SV=1
56 : K7E674_MONDO 0.51 0.62 3 41 144 182 39 0 0 474 K7E674 Uncharacterized protein OS=Monodelphis domestica GN=CD248 PE=4 SV=1
57 : CD248_HUMAN 0.50 0.63 4 41 273 310 38 0 0 757 Q9HCU0 Endosialin OS=Homo sapiens GN=CD248 PE=1 SV=1
58 : CD248_MOUSE 0.50 0.63 4 41 273 310 38 0 0 765 Q91V98 Endosialin OS=Mus musculus GN=Cd248 PE=2 SV=1
59 : F6XNG5_MACMU 0.50 0.63 4 41 273 310 38 0 0 757 F6XNG5 Uncharacterized protein OS=Macaca mulatta GN=CD248 PE=4 SV=1
60 : F7D9A3_MONDO 0.50 0.73 1 44 360 403 44 0 0 558 F7D9A3 Uncharacterized protein OS=Monodelphis domestica GN=THBD PE=4 SV=1
61 : F7IQM1_CALJA 0.50 0.63 4 41 273 310 38 0 0 755 F7IQM1 Uncharacterized protein OS=Callithrix jacchus GN=CD248 PE=4 SV=1
62 : G3S9S1_GORGO 0.50 0.63 4 41 273 310 38 0 0 757 G3S9S1 Uncharacterized protein OS=Gorilla gorilla gorilla GN=101143419 PE=4 SV=1
63 : G7NC64_MACMU 0.50 0.63 4 41 230 267 38 0 0 714 G7NC64 Tumor endothelial marker 1 (Fragment) OS=Macaca mulatta GN=EGK_05975 PE=4 SV=1
64 : H0VZ25_CAVPO 0.50 0.63 4 41 273 310 38 0 0 486 H0VZ25 Uncharacterized protein OS=Cavia porcellus GN=CD248 PE=4 SV=1
65 : H2RIA1_PANTR 0.50 0.63 4 41 273 310 38 0 0 757 H2RIA1 CD248 molecule, endosialin OS=Pan troglodytes GN=CD248 PE=2 SV=1
66 : K7CCT3_PANTR 0.50 0.63 4 41 273 310 38 0 0 757 K7CCT3 CD248 molecule, endosialin OS=Pan troglodytes GN=CD248 PE=2 SV=1
67 : G3WH56_SARHA 0.48 0.71 3 44 362 403 42 0 0 570 G3WH56 Uncharacterized protein OS=Sarcophilus harrisii GN=THBD PE=4 SV=1
68 : F6V4R1_ORNAN 0.46 0.59 6 44 360 398 39 0 0 583 F6V4R1 Uncharacterized protein OS=Ornithorhynchus anatinus GN=THBD PE=4 SV=2
69 : U3J5J9_ANAPL 0.44 0.61 1 41 26 65 41 1 1 228 U3J5J9 Uncharacterized protein (Fragment) OS=Anas platyrhynchos GN=THBD PE=4 SV=1
70 : G4LUK9_SCHMA 0.41 0.59 1 44 697 740 44 0 0 1159 G4LUK9 Notch OS=Schistosoma mansoni GN=Smp_143300 PE=4 SV=1
71 : H2SGM2_TAKRU 0.41 0.61 3 43 318 357 41 1 1 527 H2SGM2 Uncharacterized protein (Fragment) OS=Takifugu rubripes GN=LOC101067120 PE=4 SV=1
72 : H2SGM3_TAKRU 0.41 0.61 3 43 143 182 41 1 1 317 H2SGM3 Uncharacterized protein (Fragment) OS=Takifugu rubripes GN=LOC101067120 PE=4 SV=1
73 : Q4SWS2_TETNG 0.41 0.56 3 43 298 337 41 1 1 496 Q4SWS2 Chromosome undetermined SCAF13541, whole genome shotgun sequence OS=Tetraodon nigroviridis GN=GSTENG00011332001 PE=4 SV=1
## ALIGNMENTS 1 - 70
SeqNo PDBNo AA STRUCTURE BP1 BP2 ACC NOCC VAR ....:....1....:....2....:....3....:....4....:....5....:....6....:....7
1 1 A E 0 0 185 42 13 EEEEEEEEEEEEEEEE EEEEEEEEDEEEDDEEEEEEEE E QQ
2 2 A P + 0 0 129 42 67 PPPPPPPPPPPPPPLP PPASPPSSPLQQPPLLLPSSSL L PT
3 3 A V S S- 0 0 100 47 31 VVVVVVVVVVVVVVLL VVVVVVVVVLLLVVLLLVEAEM V L I VV
4 4 A D - 0 0 90 72 11 DDDDDDDDDDDDDDDD DDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDS SD
5 5 A P S S- 0 0 32 72 28 PPPPPPPPPPPPPPPP PPPPPPPPPPPPPPPPPPLLLPPPPPPPPPPPPPPPPPPPPPPPPPPPPP SS
6 6 A a S S- 0 0 26 73 0 CCCCCCCCCCCCCCCC CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
7 7 A F S S+ 0 0 148 73 87 FFFFFFFFFFFFYFFF FFFIFFLLFFFFFFFFFFLLLYAAAAAAAAAAATAAAAAAAAFAAAAAAFAYA
8 8 A R S S+ 0 0 222 73 79 RRRRRKKGGGGGGGAG GGAGGGGGDGRRDDGGGGGGGGHQHHQQQQQHHHHHQHDQQQGQQQQQQGSAI
9 9 A A S S- 0 0 11 73 62 AAAAAAASTTNSVSAT TTATSSSSNSSSNNSSSNNNNSAAAAAAAAAAAAAAAAAAAAIAAAAAAILAK
10 10 A N + 0 0 117 73 73 NNNNNNNNNNKKNKNN DDNNTNKKNNKKNNNNNSNNNDPPPPPPPPPPPPPPPPPPPPQPPPPPPKNPP
11 11 A b - 0 0 20 74 0 CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
12 12 A E S S- 0 0 128 74 3 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEQEEEEEEEEED
13 13 A Y S S+ 0 0 132 74 87 YYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYFFFYYYYYQQQQHQQQQQQQQQQQQQQQHQQQHQQHYHQ
14 14 A Q - 0 0 114 74 26 QQQQQQQQQQQQQQQQQEEQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQKQQQHQQKQRI
15 15 A a + 0 0 44 74 0 CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
16 16 A Q - 0 0 86 74 51 QQQQQQQQQQQQQQQLQQQQQQQQQQQQQQQQQQQQQQQEEEEEEEEEEEEEEEEEEEELEEEEEELLEV
17 17 A P S S- 0 0 88 74 28 PPPPPPPPPPPPPPPPPVVPPPSPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPVDD
18 18 A L S S- 0 0 129 74 78 LLLLLLLLLLVVLVVLVVVVVVVVVVVVVVVVVVVLLLLGGGGGGGGGGGGGGGGGGGGLGGGGGGLQVL
19 19 A N - 0 0 30 74 50 NNNNNNNNGGGSGSSGGGGGGGGGGGGNNGGSSSGKKKGGGGGGGGGGGGGGGGGGGGGEGGGGGGEPPG
20 20 A Q S S+ 0 0 189 74 72 QQQQQQQQQQQQHQQQQRRPHQQQQRTSSRRPPPRKEEQPPPPPPPPPPPPPPPPPPPPGAPPPPPGDGD
21 21 A T S S+ 0 0 123 74 79 TTTTTTTTTTTTTTTNNTTTTTNTTSDTTSSTTTStttDQQQQQQQQQQQQQQQQGQQQGQQQQQQGGGG
22 22 A S S S- 0 0 30 69 67 SSSSSSSSSSDDGDE.DGGNNDDDDEKHHEEDDDEpppTGGGGGGGGGGGGGGGGGGGGAGGGGGGTL.K
23 23 A Y S S- 0 0 113 74 14 YYYYYYYYYYYYYYYYYYYYYYYYYHYYYHHYYYHYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYPYY
24 24 A L S S+ 0 0 15 74 87 LLLLLLLLRRHRRRRRRRRTQRRRRKENNKKRRRQRRRKSSSSSSSSSSSSSSSSSSSSRSSSSSSRRRT
25 25 A b - 0 0 0 74 0 CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
26 26 A V - 0 0 37 74 90 VVVVVVVVIIIIVIIIIVVIVIIIIIIIIIIIIIIIIIIHHHHHHHHHHHHHHHHHHHHIHHHHHHTESK
27 27 A c - 0 0 5 74 0 CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
28 28 A A - 0 0 32 74 87 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAARRRRRRLRRRRRRRRRRRRRKRRRLRREAMN
29 29 A E S S+ 0 0 167 74 86 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEPPPEEEEELLLLLLLLLLLLLLLLLLLLELLLLLLEPPE
30 30 A G S S+ 0 0 32 74 0 GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG
31 31 A F - 0 0 77 74 1 FFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFYF
32 32 A A - 0 0 39 74 86 AAAAAAAAAAAAAAAAAAAVVAVAAAIAAAAAAAAAAVRRRRRRRRRRRRRRRRRRRRRMRRRRRRVAAE
33 33 A P - 0 0 62 74 14 PPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPVP
34 34 A I > - 0 0 30 74 85 IIIIIIIVVVSVNVNVIVVKNSSSSVNKKVVKKKVVVVKAAAAVAAAAAAAAAAAAAAAIAAAAAAVRHS
35 35 A P T 3 S+ 0 0 131 74 64 PPPPPPPPPPPPPPPPPPPPALPPPPPLLPPPPPPPPPPEEEEEEEEEEEEEEEEEEEEPEEEEEEPPPP
36 36 A H T 3 S+ 0 0 134 74 55 HHHHHHHHQQHHLHQDQHHQHQQHQGKDDGGDDDGHHHEDDDDDDDDDDDDDDDDDDDDDDDDEDDDDHN
37 37 A E < + 0 0 59 74 41 EEEEEEEEQQDDDDDEDAAEDDADDAEDDAAEEEAAAAAEEEEEEEEEEEEEEEEDDDDQDDDEDDQQEN
38 38 A P S S+ 0 0 27 74 7 PPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPQQQPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPP
39 39 A H S S+ 0 0 27 74 26 HHHHHHHHHHHHHHHHDHHSHHHQHHYDDHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHDHHHHHHDESR
40 40 A R S S- 0 0 131 74 22 RRRRRRRRRRRRRRRRRRRRRRRRRKRRRKKKKKKQKELRRRRRRRRRRRRRRRRRRRRRRRRRRRRSRR
41 41 A c - 0 0 31 74 0 CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
42 42 A Q - 0 0 150 47 50 QQQQQQQQQQQQQQQQQQQQQRQLLQQEEQREEERQQQE M MA Q
43 43 A M 0 0 129 47 17 MMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMML S LL R
44 44 A F 0 0 227 44 4 FFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFF F FF I
## ALIGNMENTS 71 - 73
SeqNo PDBNo AA STRUCTURE BP1 BP2 ACC NOCC VAR ....:....8....:....9....:....0....:....1....:....2....:....3....:....4
1 1 A E 0 0 185 42 13
2 2 A P + 0 0 129 42 67
3 3 A V S S- 0 0 100 47 31 VVV
4 4 A D - 0 0 90 72 11 NND
5 5 A P S S- 0 0 32 72 28 EEE
6 6 A a S S- 0 0 26 73 0 CCC
7 7 A F S S+ 0 0 148 73 87 TTV
8 8 A R S S+ 0 0 222 73 79 SSS
9 9 A A S S- 0 0 11 73 62 AAA
10 10 A N + 0 0 117 73 73 PPP
11 11 A b - 0 0 20 74 0 CCC
12 12 A E S S- 0 0 128 74 3 EEE
13 13 A Y S S+ 0 0 132 74 87 HHH
14 14 A Q - 0 0 114 74 26 MME
15 15 A a + 0 0 44 74 0 CCC
16 16 A Q - 0 0 86 74 51 DDK
17 17 A P S S- 0 0 88 74 28 NNN
18 18 A L S S- 0 0 129 74 78 LLS
19 19 A N - 0 0 30 74 50 PPP
20 20 A Q S S+ 0 0 189 74 72 GGG
21 21 A T S S+ 0 0 123 74 79 SSS
22 22 A S S S- 0 0 30 69 67 ...
23 23 A Y S S- 0 0 113 74 14 YYY
24 24 A L S S+ 0 0 15 74 87 VVK
25 25 A b - 0 0 0 74 0 CCC
26 26 A V - 0 0 37 74 90 SSA
27 27 A c - 0 0 5 74 0 CCC
28 28 A A - 0 0 32 74 87 YYY
29 29 A E S S+ 0 0 167 74 86 PPS
30 30 A G S S+ 0 0 32 74 0 GGG
31 31 A F - 0 0 77 74 1 YYY
32 32 A A - 0 0 39 74 86 KKR
33 33 A P - 0 0 62 74 14 EEV
34 34 A I > - 0 0 30 74 85 DDD
35 35 A P T 3 S+ 0 0 131 74 64 PPA
36 36 A H T 3 S+ 0 0 134 74 55 EEK
37 37 A E < + 0 0 59 74 41 EEE
38 38 A P S S+ 0 0 27 74 7 PPP
39 39 A H S S+ 0 0 27 74 26 HHH
40 40 A R S S- 0 0 131 74 22 RRR
41 41 A c - 0 0 31 74 0 CCC
42 42 A Q - 0 0 150 47 50 KKQ
43 43 A M 0 0 129 47 17 LLL
44 44 A F 0 0 227 44 4
## SEQUENCE PROFILE AND ENTROPY
SeqNo PDBNo V L I M F W Y G A P S T C H R K Q E N D NOCC NDEL NINS ENTROPY RELENT WEIGHT
1 1 A 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5 88 0 7 42 0 0 0.445 14 0.86
2 2 A 0 17 0 0 0 0 0 0 2 60 14 2 0 0 0 0 5 0 0 0 42 0 0 1.208 40 0.32
3 3 A 70 19 2 2 0 0 0 0 2 0 0 0 0 0 0 0 0 4 0 0 47 0 0 0.945 31 0.68
4 4 A 0 0 0 0 0 0 0 0 0 0 3 0 0 0 0 0 0 0 3 94 72 0 0 0.253 8 0.89
5 5 A 0 4 0 0 0 0 0 0 0 89 3 0 0 0 0 0 0 4 0 0 72 0 0 0.469 15 0.72
6 6 A 0 0 0 0 0 0 0 0 0 0 0 0 100 0 0 0 0 0 0 0 73 0 0 0.000 0 1.00
7 7 A 1 7 1 0 45 0 4 0 37 0 0 4 0 0 0 0 0 0 0 0 73 0 0 1.290 43 0.12
8 8 A 0 0 1 0 0 0 0 36 4 0 5 0 0 12 11 3 22 0 0 5 73 0 0 1.808 60 0.21
9 9 A 1 1 3 0 0 0 0 0 55 0 19 8 0 0 0 1 0 0 11 0 73 0 0 1.369 45 0.38
10 10 A 0 0 0 0 0 0 0 0 0 42 1 1 0 0 0 11 1 0 38 4 73 0 0 1.281 42 0.26
11 11 A 0 0 0 0 0 0 0 0 0 0 0 0 100 0 0 0 0 0 0 0 74 0 0 0.000 0 1.00
12 12 A 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 97 0 1 74 0 0 0.143 4 0.97
13 13 A 0 0 0 0 4 0 51 0 0 0 0 0 0 11 0 0 34 0 0 0 74 0 0 1.079 36 0.13
14 14 A 0 0 1 3 0 0 0 0 0 0 0 0 0 1 1 3 86 4 0 0 74 0 0 0.625 20 0.74
15 15 A 0 0 0 0 0 0 0 0 0 0 0 0 100 0 0 0 0 0 0 0 74 0 0 0.000 0 1.00
16 16 A 1 5 0 0 0 0 0 0 0 0 0 0 0 0 0 1 53 36 0 3 74 0 0 1.077 35 0.48
17 17 A 4 0 0 0 0 0 0 0 0 88 1 0 0 0 0 0 0 0 4 3 74 0 0 0.530 17 0.72
18 18 A 32 30 0 0 0 0 0 35 0 0 1 0 0 0 0 0 1 0 0 0 74 0 0 1.210 40 0.21
19 19 A 0 0 0 0 0 0 0 64 0 7 8 0 0 0 0 4 0 3 15 0 74 0 0 1.185 39 0.49
20 20 A 0 0 0 0 0 0 0 8 1 39 3 1 0 3 8 1 30 3 0 3 74 0 0 1.700 56 0.27
21 21 A 0 0 0 0 0 0 0 8 0 0 9 42 0 0 0 0 34 0 4 3 74 5 3 1.385 46 0.21
22 22 A 0 1 0 0 0 0 0 42 1 4 16 3 0 3 0 3 0 7 3 16 69 0 0 1.810 60 0.32
23 23 A 0 0 0 0 0 0 93 0 0 1 0 0 0 5 0 0 0 0 0 0 74 0 0 0.281 9 0.85
24 24 A 3 12 0 0 0 0 0 0 0 0 35 3 0 1 32 7 3 1 3 0 74 0 0 1.678 56 0.12
25 25 A 0 0 0 0 0 0 0 0 0 0 0 0 100 0 0 0 0 0 0 0 74 0 0 0.000 0 1.00
26 26 A 18 0 38 0 0 0 0 0 1 0 4 1 0 35 0 1 0 1 0 0 74 0 0 1.403 46 0.10
27 27 A 0 0 0 0 0 0 0 0 0 0 0 0 100 0 0 0 0 0 0 0 74 0 0 0.000 0 1.00
28 28 A 0 3 0 1 0 0 4 0 55 0 0 0 0 0 32 1 0 1 1 0 74 0 0 1.153 38 0.12
29 29 A 0 35 0 0 0 0 0 0 0 9 1 0 0 0 0 0 0 54 0 0 74 0 0 0.981 32 0.14
30 30 A 0 0 0 0 0 0 0 100 0 0 0 0 0 0 0 0 0 0 0 0 74 0 0 0.000 0 1.00
31 31 A 0 0 0 0 95 0 5 0 0 0 0 0 0 0 0 0 0 0 0 0 74 0 0 0.210 7 0.99
32 32 A 7 0 1 1 0 0 0 0 49 0 0 0 0 0 38 3 0 1 0 0 74 0 0 1.172 39 0.14
33 33 A 3 0 0 0 0 0 0 0 0 95 0 0 0 0 0 0 0 3 0 0 74 0 0 0.248 8 0.85
34 34 A 23 0 14 0 0 0 0 0 34 0 8 0 0 1 1 9 0 0 5 4 74 0 0 1.806 60 0.15
35 35 A 0 4 0 0 0 0 0 0 3 58 0 0 0 0 0 0 0 35 0 0 74 0 0 0.910 30 0.35
36 36 A 0 1 0 0 0 0 0 5 0 0 0 0 0 27 0 3 11 5 1 46 74 0 0 1.481 49 0.45
37 37 A 0 0 0 0 0 0 0 0 15 0 0 0 0 0 0 0 7 49 1 28 74 0 0 1.232 41 0.59
38 38 A 0 0 0 0 0 0 0 0 0 96 0 0 0 0 0 0 4 0 0 0 74 0 0 0.170 5 0.93
39 39 A 0 0 0 0 0 0 1 0 0 0 3 0 0 85 1 0 1 1 0 7 74 0 0 0.649 21 0.74
40 40 A 0 1 0 0 0 0 0 0 0 0 1 0 0 0 84 11 1 1 0 0 74 0 0 0.621 20 0.78
41 41 A 0 0 0 0 0 0 0 0 0 0 0 0 100 0 0 0 0 0 0 0 74 0 0 0.000 0 1.00
42 42 A 0 4 0 4 0 0 0 0 2 0 0 0 0 0 6 4 66 13 0 0 47 0 0 1.198 39 0.50
43 43 A 0 13 0 83 0 0 0 0 0 0 2 0 0 0 2 0 0 0 0 0 47 0 0 0.581 19 0.82
44 44 A 0 0 2 0 98 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 44 0 0 0.108 3 0.95
## INSERTION LIST
AliNo IPOS JPOS Len Sequence
36 22 384 3 tDSPp
37 22 77 3 tDSPp
38 22 77 3 tDSPp
//