Complet list of 1za8 hssp file
Complete list of 1za8.hssp file
HSSP HOMOLOGY DERIVED SECONDARY STRUCTURE OF PROTEINS , VERSION 2.0 2011
PDBID 1ZA8
THRESHOLD according to: t(L)=(290.15 * L ** -0.562) + 5
REFERENCE Sander C., Schneider R. : Database of homology-derived protein structures. Proteins, 9:56-68 (1991).
CONTACT Maintained at http://www.cmbi.ru.nl/ by Maarten L. Hekkelman
DATE file generated on 2014-05-14
HEADER ANTIVIRAL PROTEIN 05-APR-05 1ZA8
COMPND MOL_ID: 1; MOLECULE: VHL-1; CHAIN: A
SOURCE MOL_ID: 1; ORGANISM_SCIENTIFIC: VIOLA HEDERACEA; ORGANISM_TAXID: 18095
AUTHOR B.CHEN,M.L.COLGRAVE,N.L.DALY,K.J.ROSENGREN,K.R.GUSTAFSON, D.J.CRAIK
DBREF 1ZA8 A 1 28 UNP P84522 VHL1_VIOHE 4 31
SEQLENGTH 31
NCHAIN 1 chain(s) in 1ZA8 data set
NALIGN 136
NOTATION : ID: EMBL/SWISSPROT identifier of the aligned (homologous) protein
NOTATION : STRID: if the 3-D structure of the aligned protein is known, then STRID is the Protein Data Bank identifier as taken
NOTATION : from the database reference or DR-line of the EMBL/SWISSPROT entry
NOTATION : %IDE: percentage of residue identity of the alignment
NOTATION : %SIM (%WSIM): (weighted) similarity of the alignment
NOTATION : IFIR/ILAS: first and last residue of the alignment in the test sequence
NOTATION : JFIR/JLAS: first and last residue of the alignment in the alignend protein
NOTATION : LALI: length of the alignment excluding insertions and deletions
NOTATION : NGAP: number of insertions and deletions in the alignment
NOTATION : LGAP: total length of all insertions and deletions
NOTATION : LSEQ2: length of the entire sequence of the aligned protein
NOTATION : ACCNUM: SwissProt accession number
NOTATION : PROTEIN: one-line description of aligned protein
NOTATION : SeqNo,PDBNo,AA,STRUCTURE,BP1,BP2,ACC: sequential and PDB residue numbers, amino acid (lower case = Cys), secondary
NOTATION : structure, bridge partners, solvent exposure as in DSSP (Kabsch and Sander, Biopolymers 22, 2577-2637(1983)
NOTATION : VAR: sequence variability on a scale of 0-100 as derived from the NALIGN alignments
NOTATION : pair of lower case characters (AvaK) in the alignend sequence bracket a point of insertion in this sequence
NOTATION : dots (....) in the alignend sequence indicate points of deletion in this sequence
NOTATION : SEQUENCE PROFILE: relative frequency of an amino acid type at each position. Asx and Glx are in their
NOTATION : acid/amide form in proportion to their database frequencies
NOTATION : NOCC: number of aligned sequences spanning this position (including the test sequence)
NOTATION : NDEL: number of sequences with a deletion in the test protein at this position
NOTATION : NINS: number of sequences with an insertion in the test protein at this position
NOTATION : ENTROPY: entropy measure of sequence variability at this position
NOTATION : RELENT: relative entropy, i.e. entropy normalized to the range 0-100
NOTATION : WEIGHT: conservation weight
## PROTEINS : identifier and alignment statistics
NR. ID STRID %IDE %WSIM IFIR ILAS JFIR JLAS LALI NGAP LGAP LSEQ2 ACCNUM PROTEIN
1 : VHL1_VIOHE 1ZA8 1.00 1.00 1 28 4 31 28 0 0 31 P84522 Leaf cyclotide 1 OS=Viola hederacea PE=1 SV=1
2 : CYCA_CLITE 0.73 0.85 1 26 5 29 26 1 1 31 P86841 Cyclotide cter-A OS=Clitoria ternatea PE=1 SV=1
3 : CYCH_CLITE 0.73 0.81 1 26 4 28 26 1 1 30 P86848 Cyclotide cter-H OS=Clitoria ternatea PE=1 SV=1
4 : CYCK_CLITE 0.73 0.81 1 26 4 28 26 1 1 29 P86851 Cyclotide cter-K OS=Clitoria ternatea PE=1 SV=1
5 : CYCL_CLITE 0.73 0.81 1 26 4 28 26 1 1 29 P86852 Cyclotide cter-L OS=Clitoria ternatea PE=1 SV=1
6 : CYCQ_CLITE 0.73 0.81 1 26 4 28 26 1 1 30 P86904 Cyclotide cter-Q OS=Clitoria ternatea PE=1 SV=1
7 : CYVC_LEOCM 0.73 0.77 1 26 4 28 26 1 1 30 P84639 Cycloviolin-C OS=Leonia cymosa PE=1 SV=1
8 : G1CWH9_CLITE 0.70 0.77 1 30 33 61 30 1 1 124 G1CWH9 Cyclotide cter A OS=Clitoria ternatea PE=2 SV=1
9 : Q30CB3_HYBFL 0.70 0.83 1 30 75 103 30 1 1 105 Q30CB3 Cyclotide K (Fragment) OS=Hybanthus floribundus subsp. floribundus PE=2 SV=1
10 : CIRC_CHAPA 0.69 0.77 1 26 4 28 26 1 1 30 P84641 Circulin-C OS=Chassalia parviflora PE=1 SV=1
11 : CIRF_CHAPA 0.69 0.77 1 26 4 28 26 1 1 29 P84644 Circulin-F OS=Chassalia parviflora PE=1 SV=1
12 : CYCG_CLITE 0.69 0.85 1 26 4 28 26 1 1 30 P86847 Cyclotide cter-G OS=Clitoria ternatea PE=1 SV=1
13 : CYCP_CLITE 0.69 0.77 1 26 4 28 26 1 1 30 P86902 Cyclotide cter-P OS=Clitoria ternatea PE=1 SV=1
14 : CYH1_VIOHE 0.69 0.77 1 26 4 28 26 1 1 30 P58433 Cycloviolacin-H1 OS=Viola hederacea PE=1 SV=1
15 : CYO17_VIOOD 0.69 0.77 1 26 4 28 26 1 1 30 P85180 Cycloviolacin-O17 OS=Viola odorata PE=1 SV=1
16 : CYO3_VIOOD 0.69 0.77 1 26 4 28 26 1 1 30 P58435 Cycloviolacin-O3 OS=Viola odorata PE=1 SV=1
17 : CYO4_VIOOD 0.69 0.77 1 26 4 28 26 1 1 30 P58436 Cycloviolacin-O4 OS=Viola odorata PE=1 SV=2
18 : CYVA_LEOCM 0.69 0.77 1 26 5 29 26 1 1 31 P84637 Cycloviolin-A OS=Leonia cymosa PE=1 SV=1
19 : CYVD_LEOCM 0.69 0.77 1 26 4 28 26 1 1 30 P84640 Cycloviolin-D OS=Leonia cymosa PE=1 SV=1
20 : CYVG_VIOBI 0.69 0.77 1 26 5 29 26 1 1 31 P85245 Cyclotide vibi-G OS=Viola biflora PE=1 SV=1
21 : CYVH_VIOBI 0.69 0.81 1 26 5 29 26 1 1 31 P85246 Cyclotide vibi-H OS=Viola biflora PE=1 SV=1
22 : I0B6F4_9GENT 0.69 0.77 1 26 39 63 26 1 1 64 I0B6F4 Cyclotide chassatide C7 (Fragment) OS=Chassalia chartacea PE=2 SV=1
23 : K3ZBA8_SETIT 0.69 0.81 1 26 57 81 26 1 1 82 K3ZBA8 Uncharacterized protein OS=Setaria italica GN=Si023829m.g PE=4 SV=1
24 : VITA_VIOAR 0.69 0.77 1 26 4 28 26 1 1 30 P83840 Vitri peptide A OS=Viola arvensis PE=1 SV=1
25 : CYCI_CLITE 0.68 0.79 1 28 5 31 28 1 1 31 P86849 Cyclotide cter-I OS=Clitoria ternatea PE=1 SV=1
26 : CYVA_VIOCT 0.68 0.75 1 28 5 31 28 1 1 31 P84635 Cyclotide vico-A OS=Viola cotyledon PE=1 SV=1
27 : KAB5_OLDAF 2KUX 0.68 0.79 1 28 4 30 28 1 1 30 P58456 Kalata-B5 OS=Oldenlandia affinis PE=1 SV=2
28 : A9P3R6_9ROSI 0.67 0.80 1 30 65 93 30 1 1 95 A9P3R6 Cyclotide protein Mra23 (Fragment) OS=Melicytus ramiflorus PE=2 SV=1
29 : B5B3Y2_9ROSI 0.67 0.83 1 30 83 111 30 1 1 113 B5B3Y2 Cyclotide 2c OS=Viola baoshanensis PE=4 SV=1
30 : B5B3Y4_9ROSI 0.67 0.80 1 30 84 112 30 1 1 114 B5B3Y4 Cyclotide 2e OS=Viola baoshanensis PE=4 SV=1
31 : D2WPK4_9ROSI 0.67 0.73 1 30 74 102 30 1 1 104 D2WPK4 Cyclotide A (Fragment) OS=Gloeospermum blakeanum PE=2 SV=1
32 : D2WPK7_9ROSI 0.67 0.80 1 30 72 100 30 1 1 102 D2WPK7 Cyclotide G (Fragment) OS=Gloeospermum blakeanum PE=2 SV=1
33 : G1CWH4_CLITE 0.67 0.77 1 30 3 31 30 1 1 94 G1CWH4 Cyclotide cliotide T5 (Fragment) OS=Clitoria ternatea PE=2 SV=1
34 : G1CWH7_CLITE 0.67 0.77 1 30 29 57 30 1 1 117 G1CWH7 Cyclotide cliotide T9 OS=Clitoria ternatea PE=4 SV=1
35 : I0B6F5_9GENT 0.67 0.74 1 27 50 75 27 1 1 75 I0B6F5 Cyclotide chassatide C8 OS=Chassalia chartacea PE=4 SV=1
36 : Q09PG1_9ROSI 0.67 0.77 1 30 83 111 30 1 1 113 Q09PG1 Cyclotide 2 OS=Viola baoshanensis PE=4 SV=1
37 : Q30C65_HYBFL 0.67 0.77 1 30 76 104 30 1 1 106 Q30C65 Cyclotide D (Fragment) OS=Hybanthus floribundus subsp. floribundus PE=2 SV=1
38 : Q30CB5_HYBFL 0.67 0.80 1 30 72 100 30 1 1 102 Q30CB5 Cyclotide I (Fragment) OS=Hybanthus floribundus subsp. floribundus PE=2 SV=1
39 : VITA_VIOBI 0.67 0.77 1 30 73 101 30 1 1 103 B1NRR3 Cyclotide vitri-A (Fragment) OS=Viola biflora PE=1 SV=1
40 : A9P3Q6_9ROSI 0.65 0.77 1 31 63 92 31 1 1 94 A9P3Q6 Cyclotide protein Mra20 (Fragment) OS=Melicytus ramiflorus PE=2 SV=1
41 : A9P3Q7_9ROSI 0.65 0.77 1 31 61 90 31 1 1 92 A9P3Q7 Cyclotide protein Mra21 (Fragment) OS=Melicytus ramiflorus PE=2 SV=1
42 : CYO10_VIOOD 0.65 0.77 1 26 4 28 26 1 1 30 P58442 Cycloviolacin-O10 OS=Viola odorata PE=1 SV=1
43 : CYO9_VIOOD 0.65 0.77 1 26 4 28 26 1 1 30 P58441 Cycloviolacin-O9 OS=Viola odorata PE=1 SV=1
44 : D8WS39_OLDAF 0.65 0.77 1 31 106 135 31 1 1 141 D8WS39 Cyclotide Oak8 (Fragment) OS=Oldenlandia affinis GN=oak8 PE=2 SV=1
45 : B6TZ23_MAIZE 0.64 0.76 1 25 38 61 25 1 1 100 B6TZ23 Putative uncharacterized protein OS=Zea mays PE=4 SV=1
46 : CIRA_CHAPA 1BH4 0.64 0.75 1 28 4 30 28 1 1 30 P56871 Circulin-A OS=Chassalia parviflora PE=1 SV=2
47 : CIRB_CHAPA 2ERI 0.64 0.79 1 28 5 31 28 1 1 31 P56879 Circulin-B OS=Chassalia parviflora PE=1 SV=2
48 : CYCF_CLITE 0.64 0.82 1 28 4 30 28 1 1 30 P86846 Cyclotide cter-F OS=Clitoria ternatea PE=1 SV=1
49 : CYCJ_CLITE 0.64 0.79 1 28 5 31 28 1 1 31 P86850 Cyclotide cter-J OS=Clitoria ternatea PE=1 SV=1
50 : CYCO_CLITE 0.64 0.75 1 28 4 30 28 1 1 30 P86901 Cyclotide cter-O OS=Clitoria ternatea PE=1 SV=1
51 : CYO20_VIOOD 0.64 0.75 1 28 4 30 28 1 1 30 P85183 Cycloviolacin-O20 OS=Viola odorata PE=1 SV=1
52 : CYO2_VIOBI 0.64 0.75 1 28 4 30 28 1 1 30 P85526 Cycloviolacin-O2 OS=Viola biflora PE=1 SV=1
53 : CYO2_VIOOD 2KNN 0.64 0.75 1 28 4 30 28 1 1 30 P58434 Cycloviolacin-O2 OS=Viola odorata PE=1 SV=1
54 : CYO5_VIOOD 0.64 0.75 1 28 4 30 28 1 1 30 P58437 Cycloviolacin-O5 OS=Viola odorata PE=1 SV=1
55 : CYVB_VIOCT 0.64 0.75 1 28 5 31 28 1 1 31 P84636 Cyclotide vico-B OS=Viola cotyledon PE=1 SV=1
56 : CYVF_VIOBI 0.64 0.75 1 28 5 31 28 1 1 31 P85244 Cyclotide vibi-F OS=Viola biflora PE=1 SV=1
57 : PABR1_PALRI 0.64 0.75 1 28 6 32 28 1 1 32 B3EWF1 Parigidin-br1 OS=Palicourea rigida PE=1 SV=1
58 : B5B3X9_9ROSI 0.63 0.73 1 30 83 111 30 1 1 113 B5B3X9 Cyclotide 1c OS=Viola baoshanensis PE=4 SV=1
59 : B5B3Y0_9ROSI 0.63 0.73 1 30 83 111 30 1 1 113 B5B3Y0 Cyclotide 2a OS=Viola baoshanensis PE=4 SV=1
60 : B5B3Y3_9ROSI 0.63 0.73 1 30 83 111 30 1 1 113 B5B3Y3 Cyclotide 2d OS=Viola baoshanensis PE=4 SV=1
61 : B5B3Y6_9ROSI 0.63 0.77 1 30 86 114 30 1 1 116 B5B3Y6 Cyclotide 3b OS=Viola baoshanensis PE=4 SV=1
62 : B5B3Y8_9ROSI 0.63 0.77 1 30 85 113 30 1 1 115 B5B3Y8 Cyclotide 3d OS=Viola baoshanensis PE=4 SV=1
63 : CYO13_VIOOD 0.63 0.77 1 30 85 113 30 1 1 115 Q5USN8 Cycloviolacin-O13 OS=Viola odorata GN=Voc3 PE=1 SV=1
64 : CYO9_VIOBI 0.63 0.77 1 30 73 101 30 1 1 103 B1NRR2 Cycloviolacin-O9 (Fragment) OS=Viola biflora PE=1 SV=1
65 : CYVI_VIOBI 0.63 0.77 1 30 73 101 30 1 1 103 B1NRQ9 Cyclotide vibi-I (Fragment) OS=Viola biflora PE=1 SV=1
66 : D2WPK3_9ROSI 0.63 0.77 1 30 71 99 30 1 1 101 D2WPK3 Cyclotide F (Fragment) OS=Gloeospermum blakeanum PE=2 SV=1
67 : D2WPK5_9ROSI 0.63 0.80 1 30 75 103 30 1 1 105 D2WPK5 Cyclotide B (Fragment) OS=Gloeospermum blakeanum PE=2 SV=1
68 : D2WPL0_9ROSI 0.63 0.80 1 30 75 103 30 1 1 105 D2WPL0 Cyclotide B (Fragment) OS=Gloeospermum pauciflorum PE=2 SV=1
69 : D8WS40_OLDAF 0.63 0.70 1 27 103 128 27 1 1 128 D8WS40 Cyclotide Oak9 (Fragment) OS=Oldenlandia affinis GN=oak9 PE=2 SV=1
70 : G1CWH0_CLITE 0.63 0.73 1 30 3 31 30 1 1 94 G1CWH0 Cyclotide cliotide T1 (Fragment) OS=Clitoria ternatea PE=2 SV=1
71 : G1CWH3_CLITE 0.63 0.73 1 30 32 60 30 1 1 123 G1CWH3 Cyclotide cliotide T4 OS=Clitoria ternatea PE=2 SV=1
72 : I0B6G0_9GENT 0.63 0.78 1 27 50 75 27 1 1 75 I0B6G0 Cyclotide chassatide C17 OS=Chassalia chartacea PE=4 SV=1
73 : Q30C98_9ROSI 0.63 0.77 1 30 1 29 30 1 1 31 Q30C98 Cyclotide B (Fragment) OS=Hybanthus epacroides PE=2 SV=1
74 : B6E616_9ROSI 0.62 0.73 1 26 75 99 26 1 1 99 B6E616 Cyclotide protein Mra13 (Fragment) OS=Melicytus ramiflorus PE=4 SV=1
75 : HYPAA_HYBPA 0.62 0.81 1 26 4 29 26 0 0 30 P58445 Cyclotide hypa-A OS=Hybanthus parviflorus PE=1 SV=1
76 : A9P3R5_9ROSI 0.61 0.81 1 31 67 96 31 1 1 98 A9P3R5 Cyclotide protein Mra22 (Fragment) OS=Melicytus ramiflorus PE=2 SV=1
77 : B6E622_VIOOD 0.61 0.81 1 31 89 118 31 1 1 118 B6E622 Cyclotide c1 OS=Viola odorata PE=4 SV=1
78 : CYCB_CLITE 0.61 0.79 1 28 4 31 28 0 0 31 P86842 Cyclotide cter-B OS=Clitoria ternatea PE=1 SV=2
79 : CYCD_CLITE 0.61 0.79 1 28 4 31 28 0 0 31 P86844 Cyclotide cter-D OS=Clitoria ternatea PE=1 SV=1
80 : CYCR_CLITE 0.61 0.75 1 28 4 31 28 0 0 31 P86903 Cyclotide cter-R OS=Clitoria ternatea PE=1 SV=1
81 : CYLA_PSYLO 0.61 0.75 1 28 4 31 28 0 0 31 P56872 Cyclopsychotride-A OS=Psychotria longipes PE=1 SV=2
82 : CYO11_VIOOD 0.61 0.81 1 31 89 118 31 1 1 118 P58443 Cycloviolacin-O11 OS=Viola odorata GN=Voc2 PE=1 SV=2
83 : CYO19_VIOOD 0.61 0.79 1 28 5 31 28 1 1 31 P85182 Cycloviolacin-O19 OS=Viola odorata PE=1 SV=1
84 : CYO6_VIOOD 0.61 0.75 1 28 5 31 28 1 1 31 P58438 Cycloviolacin-O6 OS=Viola odorata PE=1 SV=1
85 : CYO8_VIOOD 0.61 0.81 1 31 89 118 31 1 1 118 P58440 Cycloviolacin-O8 OS=Viola odorata GN=Voc1 PE=1 SV=2
86 : CYVJ_VIOBI 0.61 0.81 1 31 76 105 31 1 1 105 B1NRR0 Cyclotide vibi-J (Fragment) OS=Viola biflora PE=1 SV=1
87 : HYFLA_HYBFL 0.61 0.79 1 28 4 31 28 0 0 31 P84647 Cyclotide Hyfl-A OS=Hybanthus floribundus PE=1 SV=1
88 : I0B6G1_9GENT 0.61 0.75 1 28 48 74 28 1 1 78 I0B6G1 Cyclotide chassatide C18 OS=Chassalia chartacea PE=4 SV=1
89 : CYCA_PETHY 0.60 0.70 1 30 47 75 30 1 1 79 B3EWH5 Cyclotide phyb-A OS=Petunia hybrida PE=1 SV=1
90 : CYVK_VIOBI 0.60 0.77 1 30 73 101 30 1 1 103 B1NRR1 Cyclotide vibi-K (Fragment) OS=Viola biflora PE=1 SV=1
91 : G1CWH6_CLITE 0.60 0.77 1 30 29 57 30 1 1 122 G1CWH6 Cyclotide cliotide T8 OS=Clitoria ternatea PE=2 SV=1
92 : G1CWH8_CLITE 0.60 0.73 1 30 32 60 30 1 1 123 G1CWH8 Cyclotide cliotide T12 OS=Clitoria ternatea PE=2 SV=1
93 : G9I0X3_9GENT 0.60 0.72 1 25 68 91 25 1 1 93 G9I0X3 Hedyotide B2 OS=Hedyotis biflora GN=hB2 PE=4 SV=1
94 : I6RZE0_PETHY 0.60 0.77 1 30 47 75 30 1 1 79 I6RZE0 Cyclotide 3 OS=Petunia hybrida GN=PETUNITIDE3 PE=4 SV=1
95 : I6S3T3_PETHY 0.60 0.70 1 30 47 75 30 1 1 79 I6S3T3 Cyclotide 1 OS=Petunia hybrida GN=PETUNITIDE1 PE=4 SV=1
96 : M9SZP2_VIOOD 0.60 0.77 1 30 49 77 30 1 1 79 M9SZP2 Cyclotide B (Fragment) OS=Viola odorata GN=vocB PE=2 SV=1
97 : Q09PG2_9ROSI 0.60 0.73 1 30 83 111 30 1 1 113 Q09PG2 Cyclotide 1 OS=Viola baoshanensis PE=4 SV=1
98 : Q30CB6_HYBFL 0.60 0.77 1 30 1 29 30 1 1 31 Q30CB6 Cyclotide H (Fragment) OS=Hybanthus floribundus subsp. floribundus PE=2 SV=1
99 : A9P3S2_9ROSI 0.59 0.70 1 27 75 100 27 1 1 100 A9P3S2 Cyclotide protein Mra13 OS=Melicytus ramiflorus PE=4 SV=1
100 : Q30CA4_9ROSI 0.59 0.74 1 27 1 26 27 1 1 27 Q30CA4 Cyclotide A (Fragment) OS=Hybanthus vernonii subsp. vernonii PE=2 SV=1
101 : A9P3Q9_9ROSI 0.58 0.81 1 31 64 93 31 1 1 144 A9P3Q9 Cyclotide protein Mra16 (Fragment) OS=Melicytus ramiflorus PE=2 SV=1
102 : CYO18_VIOOD 0.58 0.69 1 26 4 29 26 0 0 30 P85181 Cycloviolacin-O18 OS=Viola odorata PE=1 SV=1
103 : CYO7_VIOOD 0.58 0.73 1 26 4 29 26 0 0 30 P58439 Cycloviolacin-O7 OS=Viola odorata PE=1 SV=1
104 : Q30CA1_9ROSI 0.58 0.77 1 31 1 31 31 0 0 33 Q30CA1 Cyclotide A (Fragment) OS=Hybanthus enneaspermus PE=2 SV=1
105 : VHR1_VIOHE 1VB8 0.58 0.73 1 26 4 29 26 0 0 30 P83937 Root cyclotide 1 OS=Viola hederacea PE=1 SV=2
106 : B5B3X7_9ROSI 0.57 0.73 1 30 83 111 30 1 1 113 B5B3X7 Cyclotide 1a OS=Viola baoshanensis PE=4 SV=1
107 : B6U6T7_MAIZE 0.57 0.64 1 28 57 83 28 1 1 83 B6U6T7 Putative uncharacterized protein OS=Zea mays PE=4 SV=1
108 : CIRE_CHAPA 0.57 0.68 1 28 4 30 28 1 1 30 P84643 Circulin-E OS=Chassalia parviflora PE=1 SV=1
109 : CYCC_CLITE 0.57 0.79 1 28 4 31 28 0 0 31 P86843 Cyclotide cter-C OS=Clitoria ternatea PE=1 SV=1
110 : CYCE_CLITE 0.57 0.79 1 28 4 31 28 0 0 31 P86845 Cyclotide cter-E OS=Clitoria ternatea PE=1 SV=1
111 : CYH2_VIOHE 0.57 0.68 1 28 5 29 28 1 3 29 P85233 Cycloviolacin-H2 OS=Viola hederacea PE=1 SV=1
112 : G1CWH5_CLITE 0.57 0.73 1 30 29 58 30 0 0 130 G1CWH5 Cyclotide cliotide T7 OS=Clitoria ternatea PE=2 SV=1
113 : G1CWI0_CLITE 0.57 0.77 1 30 33 62 30 0 0 135 G1CWI0 Cyclotide cter B OS=Clitoria ternatea PE=2 SV=1
114 : I6QZB1_PETHY 0.57 0.77 1 30 47 75 30 1 1 79 I6QZB1 Cyclotide 2 OS=Petunia hybrida GN=PETUNITIDE2 PE=4 SV=1
115 : CYCK_PETHY 0.56 0.76 1 25 47 71 25 0 0 74 B3EWH6 Acyclotide phyb-K OS=Petunia hybrida PE=1 SV=1
116 : A9P3R0_9ROSI 0.55 0.77 1 31 64 93 31 1 1 144 A9P3R0 Cyclotide protein Mra17 (Fragment) OS=Melicytus ramiflorus PE=2 SV=1
117 : B5B3Z1_9ROSI 0.54 0.75 1 28 88 115 28 0 0 120 B5B3Z1 Cyclotide 4c OS=Viola baoshanensis PE=2 SV=1
118 : CIRD_CHAPA 0.54 0.64 1 28 4 30 28 1 1 30 P84642 Circulin-D OS=Chassalia parviflora PE=1 SV=1
119 : CYH4_VIOHE 0.54 0.73 1 26 4 29 26 0 0 30 P85234 Cycloviolacin-H4 OS=Viola hederacea PE=1 SV=1
120 : CYO1_VIOOD 1NBJ 0.54 0.73 1 26 4 29 26 0 0 30 P82230 Cycloviolacin-O1 OS=Viola odorata PE=1 SV=2
121 : CYVE_VIOBI 0.54 0.71 1 28 73 100 28 0 0 105 B1NRQ8 Cyclotide vibi-E (Fragment) OS=Viola biflora PE=1 SV=1
122 : D2WPL1_9ROSI 0.54 0.75 1 28 74 101 28 0 0 106 D2WPL1 Cyclotide E (Fragment) OS=Gloeospermum pauciflorum PE=2 SV=1
123 : D2WPL2_9ROSI 0.54 0.71 1 28 73 100 28 0 0 105 D2WPL2 Cyclotide E (Fragment) OS=Gloeospermum pauciflorum PE=2 SV=1
124 : Q09PF9_9ROSI 0.54 0.75 1 28 88 115 28 0 0 120 Q09PF9 Cyclotide 4 OS=Viola baoshanensis PE=2 SV=1
125 : I0B6F2_9GENT 0.53 0.77 1 30 48 77 30 0 0 77 I0B6F2 Cyclotide chassatide C2 OS=Chassalia chartacea PE=4 SV=1
126 : I0B6F7_9GENT 0.53 0.77 1 30 48 77 30 0 0 77 I0B6F7 Cyclotide chassatide C14 OS=Chassalia chartacea PE=4 SV=1
127 : I0B6F8_9GENT 0.53 0.77 1 30 48 77 30 0 0 77 I0B6F8 Cyclotide chassatide C15 OS=Chassalia chartacea PE=4 SV=1
128 : I0B6G4_9GENT 0.53 0.77 1 30 48 77 30 0 0 77 I0B6G4 Cyclotide chassatide C16 OS=Chassalia chartacea PE=4 SV=1
129 : Q30CA7_9ROSI 0.53 0.70 1 30 1 29 30 1 1 32 Q30CA7 Cyclotide A (Fragment) OS=Hybanthus monopetalus PE=2 SV=1
130 : S5CLG2_9GENT 0.52 0.74 1 31 48 78 31 0 0 79 S5CLG2 Caripe 2 cyclotide (Fragment) OS=Carapichea ipecacuanha PE=2 SV=1
131 : S5CTC2_9GENT 0.52 0.74 1 31 48 78 31 0 0 82 S5CTC2 Caripe 2 cyclotide (Fragment) OS=Carapichea ipecacuanha PE=2 SV=1
132 : B5B3Z0_9ROSI 0.50 0.71 1 28 88 115 28 0 0 120 B5B3Z0 Cyclotide 4b OS=Viola baoshanensis PE=2 SV=1
133 : D2WPK6_9ROSI 0.50 0.73 1 30 76 104 30 1 1 106 D2WPK6 Cyclotide D (Fragment) OS=Gloeospermum blakeanum PE=2 SV=1
134 : I0B6G2_9GENT 0.50 0.73 1 30 48 77 30 0 0 77 I0B6G2 Cyclotide chassatide C13 OS=Chassalia chartacea PE=4 SV=1
135 : Q30CA9_HYBFL 0.50 0.77 1 30 1 29 30 1 1 31 Q30CA9 Cyclotide O (Fragment) OS=Hybanthus floribundus subsp. floribundus PE=2 SV=1
136 : Q30CB0_HYBFL 0.50 0.77 1 30 1 29 30 1 1 31 Q30CB0 Cyclotide N (Fragment) OS=Hybanthus floribundus subsp. floribundus PE=2 SV=1
## ALIGNMENTS 1 - 70
SeqNo PDBNo AA STRUCTURE BP1 BP2 ACC NOCC VAR ....:....1....:....2....:....3....:....4....:....5....:....6....:....7
1 1 A a 0 0 33 137 0 CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
2 2 A G + 0 0 79 137 19 GGGGGGGGGGGGGGGGGGGGAGGGGAGGGGGGGGGGGGGGGGGGGGGGGGGGGGAGGGGGGGGGGGGGGG
3 3 A E E -A 25 0A 59 137 0 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE
4 4 A S E -A 24 0A 77 137 12 SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
5 5 A b + 0 0 9 137 0 CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
6 6 A A S S+ 0 0 65 136 6 AVVVVVVVVVV.VVVVVVVVVVIVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVV
7 7 A M S S+ 0 0 167 137 20 MFFFFFFFYFWVFYWWWFFFYWLWFYYFLFFFFFWWYFWFFYWFLWFFFFWWWWYFFWWWWWWWWFFFWF
8 8 A I S S- 0 0 93 137 8 IIIIIIIIIIIFIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII
9 9 A S S S+ 0 0 101 34 37 SP.........I..........................................................
10 10 A F - 0 0 119 135 49 F.PPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPP
11 11 A c >> - 0 0 1 136 39 CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
12 12 A F G >4 S+ 0 0 172 137 32 FIIIIILIFIIIILILIIILLLIIIFIIIIIIILILFIILLLLLIIIIIILIIIILILLLIIILLIIIII
13 13 A T G 3>>S+ 0 0 27 137 41 TSTTTSTSTTSTTTSTSSSTTTTTTTSSSSTSSTSTTSTTTTTTSSSSTTTSSSTTTTTTSSSTTSSSTT
14 14 A E G X45S+ 0 0 48 137 54 ETTTTTTTASATASASSAASTAASGGGSSSASTTTAGGSSSSSASATSGGSSSSGSSASASGASSAAAAG
15 15 A V T <<5S+ 0 0 107 137 63 VVVVVVVVVVAVAAAAAAAAVIAAIIVVVVAVVVVTIVAAAAAVVALVIIAAAAIALAAAAAAATIVVIA
16 16 A I T 345S- 0 0 140 137 47 IIVVVIAIVAIVIIIIIIIIIAIIAAILIIILIVIIAIIIIVVVILLVAAIIIVALAIIIIIIVVALLAI
17 17 A G T <<5S+ 0 0 39 137 2 GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG
18 18 A a < - 0 0 7 137 0 CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
19 19 A S E -B 26 0A 58 137 21 SSSSSSSSTSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSRSSSSSSSSSSSSSSSSSSSSSSSSS
20 20 A b E +B 25 0A 34 137 0 CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
21 21 A K E > -B 24 0A 122 137 38 KKKKKKKKKKKKKKKKKKKKKKKKKKTKKKKKKKSKKKKKKKKSEKKKKKKKKKKKKSKSKKKKKKKKSK
22 22 A N T 3 S- 0 0 119 137 52 NNNNNNNNDSNNSSNSNNNSSNDSNNDNSSTNNNNSSSSSSSSNNNNSNSSSSNNSNSSSNSSSSNSSNS
23 23 A K T 3 S+ 0 0 138 137 15 KKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKSKKKKKKKKKKK
24 24 A V E < S-AB 4 21A 41 137 3 VVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVV
25 25 A c E +AB 3 20A 0 137 0 CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
26 26 A Y E - B 0 19A 74 134 4 YYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYY YYYYYYYYYYYYYYYYYYYYYYYYY
27 27 A L B > S-C 30 0B 78 104 73 L RL IYLRRRRRRNRRYRRKK L RRLIRRRRKYKYRRRRRRRRKRRRR
28 28 A N T 3 S- 0 0 144 99 24 N NN NNNNNNNNNN NNNNNN N NNDDNDNNNNNDNNNKNNNNNNN N
29 29 A S T 3 S+ 0 0 96 63 58 HS SSSSSHH SSSSSS E SSSSSSSSSSS H
30 30 A I B < C 27 0B 109 63 19 IL LLLLLVV LLLLLL L LLLLLLLLLLL V
31 31 A S 0 0 74 14 37 AA P
## ALIGNMENTS 71 - 136
SeqNo PDBNo AA STRUCTURE BP1 BP2 ACC NOCC VAR ....:....8....:....9....:....0....:....1....:....2....:....3....:....4
1 1 A a 0 0 33 137 0 CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
2 2 A G + 0 0 79 137 19 GGGGAGGAAGGGGGGGGGGGGGGGGGGAGGGGGGAGGGAAGGAGGGAGAAAAAAAAAAGGGAGAGG
3 3 A E E -A 25 0A 59 137 0 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE
4 4 A S E -A 24 0A 77 137 12 SSTSSSSSSSSSSSSSSSSSSSSSSSSTSTSSSSSGSSSSSSSSPSSSSSSSSSSSSSTSSSTSTT
5 5 A b + 0 0 9 137 0 CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
6 6 A A S S+ 0 0 65 136 6 VVIVVVVVVVVVVVVVVVVVVVVVVVVIVLVVVVVVVVVVVVVVVVVVVVVVVVVVVVLVVVVVVV
7 7 A M S S+ 0 0 167 137 20 FYYYYWWWWFFWWWWWYFWWFFWWWWYYYFYYWYWYFWWWYFWWYYWWWYWWWWWYYYFFFWFYII
8 8 A I S S- 0 0 93 137 8 IIILIIIIIIIIIIIIIIIIIIIMIILILIIIIIILIIIIIIIMIIIIIIIIIIIIIIIIIIMIFL
9 9 A S S S+ 0 0 101 34 37 ....P..PPPP.....P..............PPPP...PP.PP.P.P.PPPPPPPPPP.RRP.P..
10 10 A F - 0 0 119 135 49 PPPPCPPCCCCPPPPPCPPPPPPYPPPPPPPCCCCPPPCC.CCYCPCPCCCCCCCCCCPCCCPCPP
11 11 A c >> - 0 0 1 136 39 CCCCTCCTTTTCCCCCTCCCCCCCCCCCCCCTTTTCCCTT.TTCTCTCTTTTTTTTTTCTTTCTCC
12 12 A F G >4 S+ 0 0 172 137 32 IIFFILIVVVVIIIIIVIVLIIIIVIFFFLIVIVVFALVVPVVIIIVVVVVVVVIIIIIIIVIVII
13 13 A T G 3>>S+ 0 0 27 137 41 TSTTTTSTTTTSSSSSTSSTSTSTSSTTTTSTTTTTTTTTCTTSTSTTTTTTTTTTTTFTTTSTSS
14 14 A E G X45S+ 0 0 48 137 54 AAETASSAAAAASASKAAASSGSAASAETSSAAAAASSAAFAAAASASAAAKAAAAAASAAAGAAA
15 15 A V T <<5S+ 0 0 107 137 63 AVAILIVLLLLVVAVVLLAAVAATAAPAIVLLLLLPVVLLILLALLLILLLMLLLLLLVLLLPLAA
16 16 A I T 345S- 0 0 140 137 47 ILVILVVLLLLVVVVIVLIVVIWMIILVIFLAALLLFFLLPLLMLLLFLLILILMFLFVLLVMLFL
17 17 A G T <<5S+ 0 0 39 137 2 GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGNGGGGGGGGGNGGGGGGGGGGGGGGGGGG
18 18 A a < - 0 0 7 137 0 CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
19 19 A S E -B 26 0A 58 137 21 SSKKSSSSSSSSSSSATSSPSSSSSSSKKSSKKSSSRKSSSSSSSSSKSSGSGSSSSSSSSSSSSS
20 20 A b E +B 25 0A 34 137 0 CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
21 21 A K E > -B 24 0A 122 137 38 KQKQKKKKKKKKKKKKKSSKKKKRSKSKQKKKKKSSEEKKRKKRLEKESSSKSKKKKKSSSSKRKK
22 22 A N T 3 S- 0 0 119 137 52 SNDGNNSDDDSSSSSSDNNSSSNNNSSDGNSSSDNSNNDDNDDNNSDNNNNDNDNDDDSNNDHNDD
23 23 A K T 3 S+ 0 0 138 137 15 KKKKKNKKKKKKKKKKKKKKKKKKKKKKKRKKKKKKKKKKRKKKKKKKNRKKKKNKKKKNNKMRTT
24 24 A V E < S-AB 4 21A 41 137 3 VVVVVVVVVVVVVVVVVVIVVVIVIVVVVGVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVV
25 25 A c E +AB 3 20A 0 137 0 CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
26 26 A Y E - B 0 19A 74 134 4 YYYYYTYYYYYYYYYYYYYYYY YYYYYYYYYYYYYVYYYYYYY YYYYYYYYYYYYYYYYYYYYY
27 27 A L B > S-C 30 0B 78 104 73 RRK LKLLKKKKKKKLNRRNR KRRRKHKK K RHHLLLKLR KNH NNNNNNKNRKKNRRKK
28 28 A N T 3 S- 0 0 144 99 24 N N NNNNNNNDNNNNNNNND NNKNN N N NDDDDNNNN NSD SSSSNNNNNNNSNNNN
29 29 A S T 3 S+ 0 0 96 63 58 H S SS S SS GSHH EGSSS S S S HHE S EEEEFGG SESS
30 30 A I B < C 27 0B 109 63 19 V L LL L LL ILVV IILLL L L L VVI L LLLLLLL LLLL
31 31 A S 0 0 74 14 37 AA A AA A A A TA
## SEQUENCE PROFILE AND ENTROPY
SeqNo PDBNo V L I M F W Y G A P S T C H R K Q E N D NOCC NDEL NINS ENTROPY RELENT WEIGHT
1 1 A 0 0 0 0 0 0 0 0 0 0 0 0 100 0 0 0 0 0 0 0 137 0 0 0.000 0 1.00
2 2 A 0 0 0 0 0 0 0 82 18 0 0 0 0 0 0 0 0 0 0 0 137 0 0 0.464 15 0.80
3 3 A 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 100 0 0 137 0 0 0.000 0 1.00
4 4 A 0 0 0 0 0 0 0 1 0 1 93 5 0 0 0 0 0 0 0 0 137 0 0 0.287 9 0.88
5 5 A 0 0 0 0 0 0 0 0 0 0 0 0 100 0 0 0 0 0 0 0 137 1 0 0.000 0 1.00
6 6 A 95 1 2 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 136 0 0 0.258 8 0.94
7 7 A 1 2 1 1 34 40 20 0 0 0 0 0 0 0 0 0 0 0 0 0 137 0 0 1.300 43 0.80
8 8 A 0 4 93 2 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 137 103 0 0.336 11 0.91
9 9 A 0 0 3 0 0 0 0 0 0 85 6 0 0 0 6 0 0 0 0 0 34 1 0 0.573 19 0.63
10 10 A 0 0 0 0 1 0 1 0 0 75 0 0 22 0 0 0 0 0 0 0 135 0 0 0.676 22 0.50
11 11 A 0 0 0 0 0 0 0 0 0 0 0 22 78 0 0 0 0 0 0 0 136 0 0 0.528 17 0.61
12 12 A 18 18 55 0 8 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0 137 0 0 1.212 40 0.68
13 13 A 0 0 0 0 1 0 0 0 0 0 35 64 1 0 0 0 0 0 0 0 137 0 0 0.728 24 0.58
14 14 A 0 0 0 0 1 0 0 9 45 0 31 11 0 0 0 1 0 3 0 0 137 0 0 1.379 46 0.46
15 15 A 28 25 10 1 0 0 0 0 32 2 0 2 0 0 0 0 0 0 0 0 137 0 0 1.503 50 0.37
16 16 A 19 26 36 3 5 1 0 0 10 1 0 0 0 0 0 0 0 0 0 0 137 0 0 1.592 53 0.52
17 17 A 0 0 0 0 0 0 0 99 0 0 0 0 0 0 0 0 0 0 1 0 137 0 0 0.076 2 0.97
18 18 A 0 0 0 0 0 0 0 0 0 0 0 0 100 0 0 0 0 0 0 0 137 0 0 0.000 0 1.00
19 19 A 0 0 0 0 0 0 0 1 1 1 88 1 0 0 1 6 0 0 0 0 137 0 0 0.532 17 0.79
20 20 A 0 0 0 0 0 0 0 0 0 0 0 0 100 0 0 0 0 0 0 0 137 0 0 0.000 0 1.00
21 21 A 0 1 0 0 0 0 0 0 0 0 14 1 0 0 3 76 2 4 0 0 137 0 0 0.863 28 0.62
22 22 A 0 0 0 0 0 0 0 1 0 0 38 1 0 1 0 0 0 0 42 17 137 0 0 1.165 38 0.47
23 23 A 0 0 0 1 0 0 0 0 0 0 1 1 0 0 3 91 0 0 4 0 137 0 0 0.448 14 0.85
24 24 A 97 0 2 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 137 0 0 0.148 4 0.97
25 25 A 0 0 0 0 0 0 0 0 0 0 0 0 100 0 0 0 0 0 0 0 137 0 0 0.000 0 1.00
26 26 A 1 0 0 0 0 0 99 0 0 0 0 1 0 0 0 0 0 0 0 0 134 0 0 0.088 2 0.96
27 27 A 0 13 2 0 0 0 4 0 0 0 0 0 0 4 40 25 0 0 12 0 104 0 0 1.558 52 0.26
28 28 A 0 0 0 0 0 0 0 0 0 0 6 0 0 0 0 2 0 0 81 11 99 0 0 0.665 22 0.75
29 29 A 0 0 0 0 2 0 0 6 0 0 65 0 0 14 0 0 0 13 0 0 63 0 0 1.060 35 0.41
30 30 A 13 78 10 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 63 0 0 0.681 22 0.81
31 31 A 0 0 0 0 0 0 0 0 79 7 7 7 0 0 0 0 0 0 0 0 14 0 0 0.755 25 0.63
## INSERTION LIST
AliNo IPOS JPOS Len Sequence
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