Complet list of 1z0q hssp file
Complete list of 1z0q.hssp file
HSSP HOMOLOGY DERIVED SECONDARY STRUCTURE OF PROTEINS , VERSION 2.0 2011
PDBID 1Z0Q
THRESHOLD according to: t(L)=(290.15 * L ** -0.562) + 5
REFERENCE Sander C., Schneider R. : Database of homology-derived protein structures. Proteins, 9:56-68 (1991).
CONTACT Maintained at http://www.cmbi.ru.nl/ by Maarten L. Hekkelman
DATE file generated on 2014-05-14
HEADER PROTEIN BINDING 02-MAR-05 1Z0Q
COMPND MOL_ID: 1; MOLECULE: ALZHEIMER'S DISEASE AMYLOID; CHAIN: A; FRAGMENT:
SOURCE MOL_ID: 1; SYNTHETIC: YES; OTHER_DETAILS: THE PEPTIDE WAS PREPARED BY
AUTHOR S.TOMASELLI,V.ESPOSITO,P.VANGONE,N.A.VAN NULAND,A.M.BONVIN, R.GUERRINI
DBREF 1Z0Q A 1 42 UNP P05067 A4_HUMAN 672 713
SEQLENGTH 42
NCHAIN 1 chain(s) in 1Z0Q data set
NALIGN 189
NOTATION : ID: EMBL/SWISSPROT identifier of the aligned (homologous) protein
NOTATION : STRID: if the 3-D structure of the aligned protein is known, then STRID is the Protein Data Bank identifier as taken
NOTATION : from the database reference or DR-line of the EMBL/SWISSPROT entry
NOTATION : %IDE: percentage of residue identity of the alignment
NOTATION : %SIM (%WSIM): (weighted) similarity of the alignment
NOTATION : IFIR/ILAS: first and last residue of the alignment in the test sequence
NOTATION : JFIR/JLAS: first and last residue of the alignment in the alignend protein
NOTATION : LALI: length of the alignment excluding insertions and deletions
NOTATION : NGAP: number of insertions and deletions in the alignment
NOTATION : LGAP: total length of all insertions and deletions
NOTATION : LSEQ2: length of the entire sequence of the aligned protein
NOTATION : ACCNUM: SwissProt accession number
NOTATION : PROTEIN: one-line description of aligned protein
NOTATION : SeqNo,PDBNo,AA,STRUCTURE,BP1,BP2,ACC: sequential and PDB residue numbers, amino acid (lower case = Cys), secondary
NOTATION : structure, bridge partners, solvent exposure as in DSSP (Kabsch and Sander, Biopolymers 22, 2577-2637(1983)
NOTATION : VAR: sequence variability on a scale of 0-100 as derived from the NALIGN alignments
NOTATION : pair of lower case characters (AvaK) in the alignend sequence bracket a point of insertion in this sequence
NOTATION : dots (....) in the alignend sequence indicate points of deletion in this sequence
NOTATION : SEQUENCE PROFILE: relative frequency of an amino acid type at each position. Asx and Glx are in their
NOTATION : acid/amide form in proportion to their database frequencies
NOTATION : NOCC: number of aligned sequences spanning this position (including the test sequence)
NOTATION : NDEL: number of sequences with a deletion in the test protein at this position
NOTATION : NINS: number of sequences with an insertion in the test protein at this position
NOTATION : ENTROPY: entropy measure of sequence variability at this position
NOTATION : RELENT: relative entropy, i.e. entropy normalized to the range 0-100
NOTATION : WEIGHT: conservation weight
## PROTEINS : identifier and alignment statistics
NR. ID STRID %IDE %WSIM IFIR ILAS JFIR JLAS LALI NGAP LGAP LSEQ2 ACCNUM PROTEIN
1 : A4_BOVIN 1.00 1.00 1 42 7 48 42 0 0 59 Q28053 Amyloid beta A4 protein (Fragment) OS=Bos taurus GN=APP PE=3 SV=1
2 : A4_CANFA 1.00 1.00 1 42 7 48 42 0 0 58 Q28280 Amyloid beta A4 protein (Fragment) OS=Canis familiaris GN=APP PE=3 SV=1
3 : A4_CAVPO 1.00 1.00 1 42 672 713 42 0 0 770 Q60495 Amyloid beta A4 protein OS=Cavia porcellus GN=APP PE=1 SV=2
4 : A4_HUMAN 2LLM 1.00 1.00 1 42 672 713 42 0 0 770 P05067 Amyloid beta A4 protein OS=Homo sapiens GN=APP PE=1 SV=3
5 : A4_MACFA 1.00 1.00 1 42 672 713 42 0 0 770 P53601 Amyloid beta A4 protein OS=Macaca fascicularis GN=APP PE=2 SV=3
6 : A4_PANTR 1.00 1.00 1 42 672 713 42 0 0 770 Q5IS80 Amyloid beta A4 protein OS=Pan troglodytes GN=APP PE=2 SV=1
7 : A4_PIG 1.00 1.00 1 42 672 713 42 0 0 770 P79307 Amyloid beta A4 protein OS=Sus scrofa GN=APP PE=2 SV=2
8 : A4_RABIT 1.00 1.00 1 42 6 47 42 0 0 58 Q28748 Amyloid beta A4 protein (Fragment) OS=Oryctolagus cuniculus GN=APP PE=3 SV=1
9 : A4_SAISC 1.00 1.00 1 42 653 694 42 0 0 751 Q95241 Amyloid beta A4 protein OS=Saimiri sciureus GN=APP PE=2 SV=1
10 : A4_SHEEP 1.00 1.00 1 42 6 47 42 0 0 58 Q28757 Amyloid beta A4 protein (Fragment) OS=Ovis aries GN=APP PE=3 SV=1
11 : A4_URSMA 1.00 1.00 1 42 6 47 42 0 0 57 Q29149 Amyloid beta A4 protein (Fragment) OS=Ursus maritimus GN=APP PE=3 SV=1
12 : B4DGD0_HUMAN 1.00 1.00 1 42 616 657 42 0 0 714 B4DGD0 cDNA FLJ50491, highly similar to Amyloid beta A4 protein (APP) (ABPP)(Alzheimer disease amyloid protein) (Cerebral vascularamyloid peptide) (CVAP) (Protease nexin-II) (PN-II)(APPI) (PreA4) OS=Homo sapiens PE=2 SV=1
13 : B4DM00_HUMAN 1.00 1.00 1 42 430 471 42 0 0 528 B4DM00 cDNA FLJ54367, highly similar to Amyloid beta A4 protein (APP) (ABPP)(Alzheimer disease amyloid protein homolog) OS=Homo sapiens PE=2 SV=1
14 : B4DMD5_HUMAN 1.00 1.00 1 42 524 565 42 0 0 622 B4DMD5 cDNA FLJ54261, highly similar to Homo sapiens amyloid beta (A4) protein, transcript variant 3, mRNA OS=Homo sapiens PE=2 SV=1
15 : B4DQM1_HUMAN 1.00 1.00 1 42 582 623 42 0 0 680 B4DQM1 cDNA FLJ51942, highly similar to Homo sapiens amyloid beta (A4) protein, transcript variant 3, mRNA OS=Homo sapiens PE=2 SV=1
16 : B7Z313_HUMAN 1.00 1.00 1 42 180 221 42 0 0 278 B7Z313 cDNA FLJ50525, highly similar to Amyloid beta A4 protein (APP) (ABPP) (Alzheimer disease amyloid protein homolog) OS=Homo sapiens PE=2 SV=1
17 : D2HDM3_AILME 1.00 1.00 1 42 652 693 42 0 0 750 D2HDM3 Putative uncharacterized protein (Fragment) OS=Ailuropoda melanoleuca GN=PANDA_008804 PE=4 SV=1
18 : E1C440_CHICK 1.00 1.00 1 42 637 678 42 0 0 735 E1C440 Uncharacterized protein (Fragment) OS=Gallus gallus GN=APP PE=4 SV=2
19 : E9PEV0_HUMAN 1.00 1.00 1 42 562 603 42 0 0 660 E9PEV0 Gamma-secretase C-terminal fragment 59 OS=Homo sapiens GN=APP PE=2 SV=1
20 : E9PG40_HUMAN 1.00 1.00 1 42 616 657 42 0 0 714 E9PG40 Gamma-secretase C-terminal fragment 59 OS=Homo sapiens GN=APP PE=2 SV=1
21 : F1P0B2_CHICK 1.00 1.00 1 42 581 622 42 0 0 679 F1P0B2 Uncharacterized protein (Fragment) OS=Gallus gallus GN=APP PE=4 SV=2
22 : F1P603_CANFA 1.00 1.00 1 42 672 713 42 0 0 770 F1P603 Amyloid beta A4 protein OS=Canis familiaris GN=APP PE=4 SV=2
23 : F1P606_CANFA 1.00 1.00 1 42 653 694 42 0 0 751 F1P606 Amyloid beta A4 protein OS=Canis familiaris GN=APP PE=4 SV=2
24 : F1P615_CANFA 1.00 1.00 1 42 616 657 42 0 0 714 F1P615 Amyloid beta A4 protein OS=Canis familiaris GN=APP PE=4 SV=2
25 : F1PC71_CANFA 1.00 1.00 1 42 597 638 42 0 0 695 F1PC71 Amyloid beta A4 protein OS=Canis familiaris GN=APP PE=4 SV=2
26 : F6XKR3_HORSE 1.00 1.00 1 42 634 675 42 0 0 732 F6XKR3 Uncharacterized protein (Fragment) OS=Equus caballus GN=APP PE=4 SV=1
27 : F6XL78_HORSE 1.00 1.00 1 42 653 694 42 0 0 751 F6XL78 Uncharacterized protein (Fragment) OS=Equus caballus GN=APP PE=4 SV=1
28 : F7CLL9_MACMU 1.00 1.00 1 42 541 582 42 0 0 639 F7CLL9 Uncharacterized protein OS=Macaca mulatta GN=LOC100423808 PE=4 SV=1
29 : F7CLM6_MACMU 1.00 1.00 1 42 597 638 42 0 0 695 F7CLM6 Uncharacterized protein OS=Macaca mulatta GN=LOC100423808 PE=4 SV=1
30 : F7CLP0_MACMU 1.00 1.00 1 42 672 713 42 0 0 770 F7CLP0 Uncharacterized protein OS=Macaca mulatta GN=LOC100423808 PE=4 SV=1
31 : F7ELT1_MACMU 1.00 1.00 1 42 654 695 42 0 0 752 F7ELT1 Uncharacterized protein OS=Macaca mulatta GN=LOC100423808 PE=4 SV=1
32 : F7ELT5_MACMU 1.00 1.00 1 42 653 694 42 0 0 751 F7ELT5 Uncharacterized protein OS=Macaca mulatta GN=LOC100423808 PE=4 SV=1
33 : F7FJ79_MACMU 1.00 1.00 1 42 616 657 42 0 0 714 F7FJ79 Uncharacterized protein OS=Macaca mulatta GN=LOC100423808 PE=4 SV=1
34 : G1MFV5_AILME 1.00 1.00 1 42 672 713 42 0 0 770 G1MFV5 Uncharacterized protein (Fragment) OS=Ailuropoda melanoleuca GN=APP PE=4 SV=1
35 : G1NNT9_MELGA 1.00 1.00 1 42 637 678 42 0 0 735 G1NNT9 Uncharacterized protein (Fragment) OS=Meleagris gallopavo GN=APP PE=4 SV=2
36 : G1QQU0_NOMLE 1.00 1.00 1 42 606 647 42 0 0 704 G1QQU0 Uncharacterized protein OS=Nomascus leucogenys GN=APP PE=4 SV=2
37 : G1SZM2_RABIT 1.00 1.00 1 42 671 712 42 0 0 769 G1SZM2 Uncharacterized protein OS=Oryctolagus cuniculus GN=LOC100009546 PE=4 SV=1
38 : G3QD87_GORGO 1.00 1.00 1 42 672 713 42 0 0 770 G3QD87 Uncharacterized protein OS=Gorilla gorilla gorilla GN=101132687 PE=4 SV=1
39 : G3S7J3_GORGO 1.00 1.00 1 42 672 713 42 0 0 770 G3S7J3 Uncharacterized protein (Fragment) OS=Gorilla gorilla gorilla GN=101132687 PE=4 SV=1
40 : G3SSG6_LOXAF 1.00 1.00 1 42 653 694 42 0 0 751 G3SSG6 Uncharacterized protein (Fragment) OS=Loxodonta africana GN=APP PE=4 SV=1
41 : G3UL78_LOXAF 1.00 1.00 1 42 182 223 42 0 0 280 G3UL78 Uncharacterized protein (Fragment) OS=Loxodonta africana GN=APP PE=4 SV=1
42 : G3URW3_MELGA 1.00 1.00 1 42 607 648 42 0 0 705 G3URW3 Uncharacterized protein (Fragment) OS=Meleagris gallopavo GN=APP PE=4 SV=1
43 : G3USJ4_MELGA 1.00 1.00 1 42 581 622 42 0 0 679 G3USJ4 Uncharacterized protein (Fragment) OS=Meleagris gallopavo GN=APP PE=4 SV=1
44 : G7MNB1_MACMU 1.00 1.00 1 42 672 713 42 0 0 770 G7MNB1 Alzheimer disease amyloid protein OS=Macaca mulatta GN=APP PE=2 SV=1
45 : G7P1M4_MACFA 1.00 1.00 1 42 431 472 42 0 0 529 G7P1M4 Alzheimer disease amyloid protein (Fragment) OS=Macaca fascicularis GN=EGM_12262 PE=4 SV=1
46 : H0UW66_CAVPO 1.00 1.00 1 42 672 713 42 0 0 770 H0UW66 Amyloid beta A4 protein OS=Cavia porcellus GN=APP PE=4 SV=1
47 : H0VZT1_CAVPO 1.00 1.00 1 42 2 43 42 0 0 43 H0VZT1 Amyloid beta A4 protein OS=Cavia porcellus GN=APP PE=4 SV=1
48 : H0WCQ9_CAVPO 1.00 1.00 1 42 653 694 42 0 0 751 H0WCQ9 Amyloid beta A4 protein (Fragment) OS=Cavia porcellus GN=APP PE=4 SV=1
49 : H0ZTL2_TAEGU 1.00 1.00 1 42 654 695 42 0 0 752 H0ZTL2 Uncharacterized protein (Fragment) OS=Taeniopygia guttata GN=APP PE=4 SV=1
50 : H7C104_HUMAN 1.00 1.00 1 40 241 280 40 0 0 280 H7C104 Amyloid beta A4 protein (Fragment) OS=Homo sapiens GN=APP PE=2 SV=2
51 : I0FGN2_MACMU 1.00 1.00 1 42 597 638 42 0 0 695 I0FGN2 Amyloid beta A4 protein isoform c OS=Macaca mulatta GN=APP PE=2 SV=1
52 : I0FGN3_MACMU 1.00 1.00 1 42 653 694 42 0 0 751 I0FGN3 Amyloid beta A4 protein isoform b OS=Macaca mulatta GN=APP PE=2 SV=1
53 : I0FRG1_MACMU 1.00 1.00 1 42 671 712 42 0 0 769 I0FRG1 Amyloid beta A4 protein isoform a OS=Macaca mulatta GN=APP PE=2 SV=1
54 : K9IN53_DESRO 1.00 1.00 1 42 579 620 42 0 0 677 K9IN53 Putative conserved secreted mucin OS=Desmodus rotundus PE=2 SV=1
55 : K9IZI9_DESRO 1.00 1.00 1 42 654 695 42 0 0 752 K9IZI9 Putative conserved secreted mucin OS=Desmodus rotundus PE=2 SV=1
56 : K9IZK4_DESRO 1.00 1.00 1 42 672 713 42 0 0 770 K9IZK4 Putative conserved secreted mucin OS=Desmodus rotundus PE=2 SV=1
57 : K9J2F8_DESRO 1.00 1.00 1 42 597 638 42 0 0 695 K9J2F8 Putative conserved secreted mucin OS=Desmodus rotundus PE=2 SV=1
58 : K9KAU3_HORSE 1.00 1.00 1 42 154 195 42 0 0 252 K9KAU3 Amyloid beta A4 protein-like protein (Fragment) OS=Equus caballus PE=2 SV=1
59 : L5KXN3_PTEAL 1.00 1.00 1 42 650 691 42 0 0 748 L5KXN3 Amyloid beta A4 protein OS=Pteropus alecto GN=PAL_GLEAN10018500 PE=4 SV=1
60 : L5M5V8_MYODS 1.00 1.00 1 42 237 278 42 0 0 335 L5M5V8 Amyloid beta A4 protein OS=Myotis davidii GN=MDA_GLEAN10015941 PE=4 SV=1
61 : L8I4L3_9CETA 1.00 1.00 1 42 625 666 42 0 0 723 L8I4L3 Amyloid beta A4 protein (Fragment) OS=Bos mutus GN=M91_03351 PE=4 SV=1
62 : L9JEB8_TUPCH 1.00 1.00 1 42 627 668 42 0 0 725 L9JEB8 Amyloid beta A4 protein OS=Tupaia chinensis GN=TREES_T100005586 PE=4 SV=1
63 : M1EDY4_MUSPF 1.00 1.00 1 42 308 349 42 0 0 405 M1EDY4 Amyloid beta protein (Fragment) OS=Mustela putorius furo PE=2 SV=1
64 : M3XPJ8_MUSPF 1.00 1.00 1 42 532 573 42 0 0 630 M3XPJ8 Uncharacterized protein OS=Mustela putorius furo GN=APP PE=4 SV=1
65 : O93296_CHICK 1.00 1.00 1 42 436 477 42 0 0 534 O93296 Amyloid protein (Fragment) OS=Gallus gallus PE=2 SV=1
66 : Q08E54_BOVIN 1.00 1.00 1 42 597 638 42 0 0 695 Q08E54 Amyloid beta (A4) protein OS=Bos taurus GN=APP PE=2 SV=1
67 : Q2XQ99_PIG 1.00 1.00 1 42 653 694 42 0 0 751 Q2XQ99 Amyloid beta A4 protein OS=Sus scrofa GN=APP PE=2 SV=1
68 : Q2XQA0_PIG 1.00 1.00 1 42 597 638 42 0 0 695 Q2XQA0 Amyloid beta A4 protein OS=Sus scrofa GN=APP PE=2 SV=1
69 : Q4R4R8_MACFA 1.00 1.00 1 42 653 694 42 0 0 751 Q4R4R8 Brain cDNA, clone: QflA-13524, similar to human amyloid beta (A4) protein (protease nexin-II,Alzheimer disease) (APP), transcript variant 2, OS=Macaca fascicularis PE=2 SV=1
70 : Q56JJ6_GRAGR 1.00 1.00 1 42 1 42 42 0 0 42 Q56JJ6 Amyloid beta protein (Fragment) OS=Grampus griseus PE=2 SV=1
71 : Q56JJ7_TURTR 1.00 1.00 1 42 1 42 42 0 0 42 Q56JJ7 Amyloid beta protein (Fragment) OS=Tursiops truncatus PE=2 SV=1
72 : Q56JK2_STECO 1.00 1.00 1 42 651 692 42 0 0 749 Q56JK2 Beta-amyloid protein 749 OS=Stenella coeruleoalba PE=2 SV=1
73 : Q56JK3_CANFA 1.00 1.00 1 42 597 638 42 0 0 695 Q56JK3 Beta-amyloid protein 695 OS=Canis familiaris PE=2 SV=1
74 : Q56JK4_CANFA 1.00 1.00 1 42 616 657 42 0 0 714 Q56JK4 Beta-amyloid protein 714 OS=Canis familiaris PE=2 SV=1
75 : Q56JK5_CANFA 1.00 1.00 1 42 653 694 42 0 0 751 Q56JK5 Beta-amyloid protein 751 OS=Canis familiaris PE=2 SV=1
76 : Q56JK6_CANFA 1.00 1.00 1 42 672 713 42 0 0 770 Q56JK6 Beta-amyloid protein 770 OS=Canis familiaris PE=2 SV=1
77 : Q5R477_PONAB 1.00 1.00 1 42 597 638 42 0 0 695 Q5R477 Putative uncharacterized protein DKFZp459D212 OS=Pongo abelii GN=DKFZp459D212 PE=2 SV=1
78 : Q6RH28_CANFA 1.00 1.00 1 42 653 694 42 0 0 751 Q6RH28 Beta amyloid protein isoform APP751 OS=Canis familiaris GN=beta APP PE=2 SV=1
79 : Q6RH29_CANFA 1.00 1.00 1 42 597 638 42 0 0 695 Q6RH29 Beta amyloid protein isoform APP695 OS=Canis familiaris GN=beta APP PE=2 SV=1
80 : Q6RH30_CANFA 1.00 1.00 1 42 672 713 42 0 0 770 Q6RH30 Beta amyloid protein isoform APP770 OS=Canis familiaris GN=beta APP PE=2 SV=1
81 : Q7M088_CAVPO 1.00 1.00 1 42 1 42 42 0 0 42 Q7M088 Beta-amyloid protein (Fragment) OS=Cavia porcellus PE=1 SV=1
82 : Q8JH58_CHESE 1.00 1.00 1 42 15 56 42 0 0 113 Q8JH58 Amyloid beta protein (Fragment) OS=Chelydra serpentina PE=2 SV=1
83 : Q9DGJ7_CHICK 1.00 1.00 1 42 653 694 42 0 0 751 Q9DGJ7 Beta-amyloid protein 751 isoform OS=Gallus gallus PE=2 SV=1
84 : Q9DGJ8_CHICK 1.00 1.00 1 42 597 638 42 0 0 695 Q9DGJ8 Beta-amyloid protein 695 isoform OS=Gallus gallus PE=2 SV=1
85 : Q9PVL1_CHICK 1.00 1.00 1 42 472 513 42 0 0 569 Q9PVL1 Amyloid protein (Fragment) OS=Gallus gallus GN=APP PE=2 SV=1
86 : S5WHW2_TUPBE 1.00 1.00 1 42 597 638 42 0 0 695 S5WHW2 APP OS=Tupaia belangeri PE=2 SV=1
87 : S7PAA7_MYOBR 1.00 1.00 1 36 701 736 36 0 0 817 S7PAA7 Amyloid beta A4 protein OS=Myotis brandtii GN=D623_10008979 PE=4 SV=1
88 : S9XY19_9CETA 1.00 1.00 1 42 351 392 42 0 0 449 S9XY19 Amyloid beta A4 protein-like isoform 1 OS=Camelus ferus GN=CB1_000876006 PE=4 SV=1
89 : U3BFP5_CALJA 1.00 1.00 1 42 597 638 42 0 0 695 U3BFP5 Amyloid beta A4 protein isoform c OS=Callithrix jacchus GN=APP PE=2 SV=1
90 : U3BYM5_CALJA 1.00 1.00 1 42 653 694 42 0 0 751 U3BYM5 Amyloid beta A4 protein isoform b OS=Callithrix jacchus GN=APP PE=2 SV=1
91 : U3DDZ5_CALJA 1.00 1.00 1 42 654 695 42 0 0 752 U3DDZ5 Amyloid beta A4 protein isoform h OS=Callithrix jacchus GN=APP PE=2 SV=1
92 : U3EFG5_CALJA 1.00 1.00 1 42 672 713 42 0 0 770 U3EFG5 Amyloid beta A4 protein isoform a OS=Callithrix jacchus GN=APP PE=2 SV=1
93 : U3FGW5_CALJA 1.00 1.00 1 42 579 620 42 0 0 677 U3FGW5 Amyloid beta A4 protein isoform j OS=Callithrix jacchus GN=APP PE=2 SV=1
94 : U3FL54_CALJA 1.00 1.00 1 42 635 676 42 0 0 733 U3FL54 Amyloid beta A4 protein isoform i OS=Callithrix jacchus GN=APP PE=2 SV=1
95 : U3IMZ0_ANAPL 1.00 1.00 1 42 109 150 42 0 0 207 U3IMZ0 Uncharacterized protein (Fragment) OS=Anas platyrhynchos GN=APP PE=4 SV=1
96 : U3IMZ9_ANAPL 1.00 1.00 1 42 255 296 42 0 0 353 U3IMZ9 Uncharacterized protein (Fragment) OS=Anas platyrhynchos GN=APP PE=4 SV=1
97 : U3KBV2_FICAL 1.00 1.00 1 42 640 681 42 0 0 738 U3KBV2 Uncharacterized protein (Fragment) OS=Ficedula albicollis GN=APP PE=4 SV=1
98 : W5Q0C6_SHEEP 1.00 1.00 1 42 672 713 42 0 0 770 W5Q0C6 Amyloid beta A4 protein OS=Ovis aries GN=APP PE=4 SV=1
99 : A4_FELCA 0.98 1.00 1 40 1 40 40 0 0 40 P86906 Amyloid beta A4 protein (Fragment) OS=Felis catus GN=APP PE=1 SV=1
100 : B4DJT9_HUMAN 0.98 1.00 1 42 562 603 42 0 0 660 B4DJT9 cDNA FLJ59550, highly similar to Homo sapiens amyloid beta (A4) protein, transcript variant 3, mRNA OS=Homo sapiens PE=2 SV=1
101 : E0A3M4_HETGA 0.98 1.00 1 42 19 60 42 0 0 105 E0A3M4 Amyloid beta protein (Fragment) OS=Heterocephalus glaber GN=APP PE=2 SV=1
102 : F6VZ17_CALJA 0.98 1.00 1 42 430 471 42 0 0 528 F6VZ17 Uncharacterized protein OS=Callithrix jacchus GN=APP PE=4 SV=1
103 : F6ZWG7_CALJA 0.98 1.00 1 42 672 713 42 0 0 770 F6ZWG7 Uncharacterized protein OS=Callithrix jacchus GN=APP PE=4 SV=1
104 : F6ZXB5_CALJA 0.98 1.00 1 42 653 694 42 0 0 751 F6ZXB5 Uncharacterized protein OS=Callithrix jacchus GN=APP PE=4 SV=1
105 : F7BG93_CALJA 0.98 1.00 1 42 562 603 42 0 0 660 F7BG93 Uncharacterized protein OS=Callithrix jacchus GN=APP PE=4 SV=1
106 : F7BVA8_CALJA 0.98 1.00 1 42 524 565 42 0 0 622 F7BVA8 Uncharacterized protein OS=Callithrix jacchus GN=APP PE=4 SV=1
107 : F7FDC4_CALJA 0.98 1.00 1 42 616 657 42 0 0 714 F7FDC4 Uncharacterized protein OS=Callithrix jacchus GN=APP PE=4 SV=1
108 : F7HVD8_CALJA 0.98 1.00 1 42 582 623 42 0 0 680 F7HVD8 Uncharacterized protein OS=Callithrix jacchus GN=APP PE=4 SV=1
109 : F7HZ59_CALJA 0.98 1.00 1 42 597 638 42 0 0 695 F7HZ59 Uncharacterized protein OS=Callithrix jacchus GN=APP PE=4 SV=1
110 : G1KQA1_ANOCA 0.98 1.00 1 42 678 719 42 0 0 776 G1KQA1 Uncharacterized protein (Fragment) OS=Anolis carolinensis GN=APP PE=4 SV=1
111 : G1PHP7_MYOLU 0.98 1.00 1 42 673 714 42 0 0 771 G1PHP7 Uncharacterized protein (Fragment) OS=Myotis lucifugus GN=APP PE=4 SV=1
112 : G5BQQ4_HETGA 0.98 1.00 1 42 653 694 42 0 0 751 G5BQQ4 Amyloid beta A4 protein (Fragment) OS=Heterocephalus glaber GN=GW7_00368 PE=4 SV=1
113 : H2ZW72_LATCH 0.98 1.00 1 42 554 595 42 0 0 652 H2ZW72 Uncharacterized protein OS=Latimeria chalumnae PE=4 SV=1
114 : J3S3Z4_CROAD 0.98 1.00 1 42 652 693 42 0 0 750 J3S3Z4 Amyloid beta A4 protein-like OS=Crotalus adamanteus PE=2 SV=1
115 : T1E6J6_CROHD 0.98 1.00 1 42 652 693 42 0 0 750 T1E6J6 Amyloid beta A4 protein-like protein OS=Crotalus horridus PE=2 SV=1
116 : A4_MOUSE 2YT1 0.93 0.98 1 42 672 713 42 0 0 770 P12023 Amyloid beta A4 protein OS=Mus musculus GN=App PE=1 SV=3
117 : A4_RAT 1NMJ 0.93 0.98 1 42 672 713 42 0 0 770 P08592 Amyloid beta A4 protein OS=Rattus norvegicus GN=App PE=1 SV=2
118 : F6RJV8_MONDO 0.93 0.98 1 42 575 616 42 0 0 673 F6RJV8 Uncharacterized protein OS=Monodelphis domestica GN=APP PE=4 SV=2
119 : G3HMG4_CRIGR 0.93 0.98 1 42 335 376 42 0 0 433 G3HMG4 Amyloid beta A4 protein OS=Cricetulus griseus GN=I79_011926 PE=4 SV=1
120 : G3VGV4_SARHA 0.93 1.00 1 42 652 693 42 0 0 750 G3VGV4 Uncharacterized protein OS=Sarcophilus harrisii GN=APP PE=4 SV=1
121 : G3VGV5_SARHA 0.93 1.00 1 42 651 692 42 0 0 749 G3VGV5 Uncharacterized protein (Fragment) OS=Sarcophilus harrisii GN=APP PE=4 SV=1
122 : O35463_CRIGR 0.93 0.98 1 42 21 62 42 0 0 79 O35463 Alzheimer's amyloid beta protein (Fragment) OS=Cricetulus griseus GN=beta APP PE=2 SV=1
123 : Q3MQ25_ANTST 0.93 1.00 1 42 16 57 42 0 0 64 Q3MQ25 Amyloid beta A4 protein (Fragment) OS=Antechinus stuartii GN=app PE=2 SV=1
124 : Q3TWF3_MOUSE 0.93 0.98 1 42 654 695 42 0 0 752 Q3TWF3 Putative uncharacterized protein OS=Mus musculus GN=App PE=2 SV=1
125 : Q3TXI9_MOUSE 0.93 0.98 1 42 654 695 42 0 0 752 Q3TXI9 Putative uncharacterized protein OS=Mus musculus GN=App PE=2 SV=1
126 : Q53ZT3_MOUSE 0.93 0.98 1 42 672 713 42 0 0 770 Q53ZT3 Amyloid-beta protein-like protein long isoform OS=Mus musculus GN=App PE=2 SV=1
127 : Q6GR78_MOUSE 0.93 0.98 1 42 597 638 42 0 0 695 Q6GR78 Amyloid beta (A4) protein OS=Mus musculus GN=App PE=2 SV=1
128 : Q6P6Q5_RAT 0.93 0.98 1 42 635 676 42 0 0 733 Q6P6Q5 App protein OS=Rattus norvegicus GN=App PE=2 SV=1
129 : Q8BPC7_MOUSE 0.93 0.98 1 42 286 327 42 0 0 384 Q8BPC7 Putative uncharacterized protein (Fragment) OS=Mus musculus GN=App PE=2 SV=1
130 : Q8BPV5_MOUSE 0.93 0.98 1 42 120 161 42 0 0 218 Q8BPV5 Putative uncharacterized protein (Fragment) OS=Mus musculus GN=App PE=2 SV=1
131 : V9KFG0_CALMI 0.90 1.00 1 42 599 640 42 0 0 697 V9KFG0 Amyloid beta A4 protein OS=Callorhynchus milii PE=2 SV=1
132 : V8PCH2_OPHHA 0.89 0.93 1 42 637 681 45 1 3 738 V8PCH2 Amyloid beta A4 protein (Fragment) OS=Ophiophagus hannah GN=APP PE=4 SV=1
133 : F7D9N7_XENTR 0.88 1.00 1 42 673 714 42 0 0 771 F7D9N7 Uncharacterized protein (Fragment) OS=Xenopus tropicalis GN=app PE=4 SV=1
134 : G5DY97_9PIPI 0.88 1.00 1 42 120 161 42 0 0 210 G5DY97 Putative beta-amyloid a4 (Fragment) OS=Pipa carvalhoi PE=2 SV=1
135 : Q6DJB6_XENTR 0.88 1.00 1 42 652 693 42 0 0 750 Q6DJB6 Amyloid beta (A4) protein OS=Xenopus tropicalis GN=app PE=2 SV=1
136 : Q6NRR1_XENLA 0.88 1.00 1 42 651 692 42 0 0 749 Q6NRR1 App protein OS=Xenopus laevis GN=app PE=2 SV=1
137 : Q91963_9PIPI 0.88 1.00 1 42 649 690 42 0 0 747 Q91963 APP747 OS=Xenopus GN=APP747 PE=2 SV=1
138 : Q98SG0_XENLA 0.88 1.00 1 42 595 636 42 0 0 693 Q98SG0 Beta-amyloid protein A (Precursor) OS=Xenopus laevis GN=app PE=2 SV=1
139 : V9KDA3_CALMI 0.88 0.98 1 42 655 696 42 0 0 753 V9KDA3 Amyloid beta A4 protein-like protein OS=Callorhynchus milii PE=2 SV=1
140 : W5L6V9_ASTMX 0.88 0.95 1 42 775 816 42 0 0 873 W5L6V9 Uncharacterized protein OS=Astyanax mexicanus PE=4 SV=1
141 : F1C7C1_PERFV 0.86 0.93 1 42 263 304 42 0 0 361 F1C7C1 Amyloid beta a4 protein (Fragment) OS=Perca flavescens GN=App PE=2 SV=1
142 : M4AC86_XIPMA 0.86 0.93 1 42 598 639 42 0 0 696 M4AC86 Uncharacterized protein OS=Xiphophorus maculatus PE=4 SV=1
143 : O57394_NARJA 0.86 0.98 1 42 601 642 42 0 0 699 O57394 EL amyloid protein 699 OS=Narke japonica GN=el app699 PE=2 SV=1
144 : Q7ZXQ0_XENLA 0.86 1.00 1 42 597 638 42 0 0 695 Q7ZXQ0 MGC52816 protein OS=Xenopus laevis GN=MGC52816 PE=2 SV=1
145 : Q98SF9_XENLA 0.86 1.00 1 42 597 638 42 0 0 695 Q98SF9 Beta-amyloid protein B (Precursor) OS=Xenopus laevis GN=app PE=2 SV=1
146 : W5MXT3_LEPOC 0.86 0.95 1 42 648 689 42 0 0 746 W5MXT3 Uncharacterized protein (Fragment) OS=Lepisosteus oculatus PE=4 SV=1
147 : W5U9W6_ICTPU 0.86 0.98 1 42 657 698 42 0 0 754 W5U9W6 Amyloid beta A4 protein OS=Ictalurus punctatus GN=app PE=2 SV=1
148 : A4_TETFL 0.83 0.93 1 42 682 723 42 0 0 780 O73683 Amyloid beta A4 protein OS=Tetraodon fluviatilis GN=app PE=2 SV=1
149 : G3NGM2_GASAC 0.83 0.93 1 42 651 692 42 0 0 749 G3NGM2 Uncharacterized protein OS=Gasterosteus aculeatus PE=4 SV=1
150 : G3PQL0_GASAC 0.83 0.93 1 42 689 730 42 0 0 787 G3PQL0 Uncharacterized protein (Fragment) OS=Gasterosteus aculeatus PE=4 SV=1
151 : H2TNW1_TAKRU 0.83 0.93 1 42 666 707 42 0 0 764 H2TNW1 Uncharacterized protein (Fragment) OS=Takifugu rubripes GN=LOC101066792 PE=4 SV=1
152 : H2TNW2_TAKRU 0.83 0.93 1 42 644 685 42 0 0 742 H2TNW2 Uncharacterized protein (Fragment) OS=Takifugu rubripes GN=LOC101066792 PE=4 SV=1
153 : H2TNW3_TAKRU 0.83 0.93 1 42 596 637 42 0 0 694 H2TNW3 Uncharacterized protein (Fragment) OS=Takifugu rubripes GN=LOC101066792 PE=4 SV=1
154 : H3C1S2_TETNG 0.83 0.93 1 42 574 615 42 0 0 672 H3C1S2 Uncharacterized protein OS=Tetraodon nigroviridis PE=4 SV=1
155 : H3C327_TETNG 0.83 0.93 1 42 672 713 42 0 0 770 H3C327 Uncharacterized protein (Fragment) OS=Tetraodon nigroviridis PE=4 SV=1
156 : H3DAM0_TETNG 0.83 0.93 1 42 630 671 42 0 0 728 H3DAM0 Uncharacterized protein OS=Tetraodon nigroviridis PE=4 SV=1
157 : Q4RY33_TETNG 0.83 0.93 1 42 656 697 42 0 0 754 Q4RY33 Chromosome 3 SCAF14978, whole genome shotgun sequence. (Fragment) OS=Tetraodon nigroviridis GN=GSTENG00027170001 PE=4 SV=1
158 : I3K2G0_ORENI 0.81 0.93 1 42 686 727 42 0 0 784 I3K2G0 Uncharacterized protein OS=Oreochromis niloticus GN=LOC100694218 PE=4 SV=1
159 : I3K2G1_ORENI 0.81 0.93 1 42 678 719 42 0 0 776 I3K2G1 Uncharacterized protein (Fragment) OS=Oreochromis niloticus GN=LOC100694218 PE=4 SV=1
160 : M4AE25_XIPMA 0.81 0.93 1 42 609 650 42 0 0 707 M4AE25 Uncharacterized protein OS=Xiphophorus maculatus PE=4 SV=1
161 : A4_TAKRU 0.79 0.93 1 42 639 680 42 0 0 737 O93279 Amyloid beta A4 protein OS=Takifugu rubripes GN=app PE=3 SV=1
162 : H2LJY4_ORYLA 0.79 0.90 1 42 676 717 42 0 0 742 H2LJY4 Uncharacterized protein (Fragment) OS=Oryzias latipes PE=4 SV=1
163 : H2TSC9_TAKRU 0.79 0.93 1 42 651 692 42 0 0 749 H2TSC9 Uncharacterized protein OS=Takifugu rubripes GN=LOC101078447 PE=4 SV=1
164 : H2TSD0_TAKRU 0.79 0.93 1 42 637 678 42 0 0 735 H2TSD0 Uncharacterized protein OS=Takifugu rubripes GN=LOC101078447 PE=4 SV=1
165 : H2TSD1_TAKRU 0.79 0.93 1 42 595 636 42 0 0 693 H2TSD1 Uncharacterized protein OS=Takifugu rubripes GN=LOC101078447 PE=4 SV=1
166 : H2TSD2_TAKRU 0.79 0.93 1 42 264 305 42 0 0 362 H2TSD2 Uncharacterized protein OS=Takifugu rubripes GN=LOC101078447 PE=4 SV=1
167 : H3BXB8_TETNG 0.79 0.93 1 42 640 681 42 0 0 738 H3BXB8 Uncharacterized protein OS=Tetraodon nigroviridis PE=4 SV=1
168 : H3BYK8_TETNG 0.79 0.93 1 42 652 693 42 0 0 750 H3BYK8 Uncharacterized protein OS=Tetraodon nigroviridis PE=4 SV=1
169 : H3D8S6_TETNG 0.79 0.93 1 42 658 699 42 0 0 756 H3D8S6 Uncharacterized protein (Fragment) OS=Tetraodon nigroviridis PE=4 SV=1
170 : Q4S0J4_TETNG 0.79 0.93 1 42 661 702 42 0 0 759 Q4S0J4 Chromosome 2 SCAF14781, whole genome shotgun sequence OS=Tetraodon nigroviridis GN=GSTENG00025991001 PE=4 SV=1
171 : I3KA26_ORENI 0.76 0.90 1 42 595 636 42 0 0 693 I3KA26 Uncharacterized protein OS=Oreochromis niloticus GN=LOC100709268 PE=4 SV=1
172 : I3KA27_ORENI 0.76 0.90 1 42 652 693 42 0 0 750 I3KA27 Uncharacterized protein (Fragment) OS=Oreochromis niloticus GN=LOC100709268 PE=4 SV=1
173 : W5K5D8_ASTMX 0.74 0.93 1 42 666 706 42 1 1 763 W5K5D8 Uncharacterized protein OS=Astyanax mexicanus PE=4 SV=1
174 : W5K5E1_ASTMX 0.74 0.93 1 42 662 702 42 1 1 759 W5K5E1 Uncharacterized protein (Fragment) OS=Astyanax mexicanus PE=4 SV=1
175 : B0V0E4_DANRE 0.71 0.95 1 42 596 637 42 0 0 694 B0V0E4 Uncharacterized protein OS=Danio rerio GN=appb PE=4 SV=1
176 : B0V0E5_DANRE 0.71 0.95 1 42 653 694 42 0 0 751 B0V0E5 Uncharacterized protein OS=Danio rerio GN=appb PE=1 SV=1
177 : F1R8S2_DANRE 0.71 0.95 1 42 264 305 42 0 0 362 F1R8S2 Uncharacterized protein OS=Danio rerio GN=appb PE=4 SV=1
178 : F1RC40_DANRE 0.71 0.95 1 42 264 305 42 0 0 362 F1RC40 Uncharacterized protein OS=Danio rerio GN=appb PE=4 SV=1
179 : H2LYH0_ORYLA 0.71 0.92 5 42 655 692 38 0 0 749 H2LYH0 Uncharacterized protein OS=Oryzias latipes GN=LOC101172288 PE=4 SV=1
180 : I6Z1P1_DANRE 0.71 0.95 1 42 596 637 42 0 0 694 I6Z1P1 Amyloid beta protein b OS=Danio rerio GN=appb PE=2 SV=1
181 : Q5XIY5_DANRE 0.71 0.95 1 42 264 305 42 0 0 362 Q5XIY5 Appb protein OS=Danio rerio GN=appb PE=2 SV=1
182 : Q8UUI7_DANRE 0.71 0.95 1 42 141 182 42 0 0 239 Q8UUI7 Putative membrane protein (Fragment) OS=Danio rerio GN=appb PE=2 SV=1
183 : Q8UUR9_DANRE 0.71 0.95 1 42 596 637 42 0 0 694 Q8UUR9 Putative membrane protein OS=Danio rerio GN=appb PE=2 SV=1
184 : B0CM02_DANRE 0.68 0.95 1 38 596 633 38 0 0 666 B0CM02 Appb (Fragment) OS=Danio rerio GN=appb PE=2 SV=1
185 : F1QKA6_DANRE 0.65 0.92 1 37 596 632 37 0 0 660 F1QKA6 Uncharacterized protein OS=Danio rerio GN=appb PE=4 SV=1
186 : H2P2T9_PONAB 0.65 0.77 3 42 641 679 40 1 1 736 H2P2T9 Uncharacterized protein OS=Pongo abelii GN=APP PE=4 SV=1
187 : I3MC24_SPETR 0.56 0.74 1 34 670 703 34 0 0 767 I3MC24 Uncharacterized protein (Fragment) OS=Spermophilus tridecemlineatus GN=APP PE=4 SV=1
188 : H2TNW0_TAKRU 0.55 0.69 1 42 653 693 42 1 1 750 H2TNW0 Uncharacterized protein (Fragment) OS=Takifugu rubripes GN=LOC101066792 PE=4 SV=1
189 : H2TNW4_TAKRU 0.55 0.67 1 42 516 554 42 1 3 610 H2TNW4 Uncharacterized protein (Fragment) OS=Takifugu rubripes GN=LOC101066792 PE=4 SV=1
## ALIGNMENTS 1 - 70
SeqNo PDBNo AA STRUCTURE BP1 BP2 ACC NOCC VAR ....:....1....:....2....:....3....:....4....:....5....:....6....:....7
1 1 A D 0 0 184 188 19 DDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDD
2 2 A A - 0 0 54 188 68 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
3 3 A E S S- 0 0 144 189 12 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE
4 4 A F S > S+ 0 0 150 189 101 FFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFF
5 5 A R T 4 S+ 0 0 232 190 23 RRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRR
6 6 A H T 4 S+ 0 0 97 190 29 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
7 7 A D T >> S+ 0 0 72 190 59 DDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDD
8 8 A S T 3< + 0 0 64 190 61 SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
9 9 A G T 34 S+ 0 0 50 190 27 GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG
10 10 A Y T <> S+ 0 0 121 190 5 YYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYY
11 11 A E H X S+ 0 0 71 190 16 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE
12 12 A V H 4 S+ 0 0 106 190 9 VVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVV
13 13 A H H >4 S+ 0 0 113 190 56 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
14 14 A H H >X S+ 0 0 142 190 27 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
15 15 A Q H 3X + 0 0 105 190 36 QQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ
16 16 A K H <4 S- 0 0 149 190 22 KKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKK
17 17 A L H X>>S+ 0 0 107 185 3 LLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLL
18 18 A V I 3X>S+ 0 0 38 189 20 VVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVV
19 19 A F I 3<5S+ 0 0 105 189 6 FFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFF
20 20 A F I <>5S+ 0 0 130 190 21 FFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFF
21 21 A A I <5S+ 0 0 60 190 10 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
22 22 A E I < S+ 0 0 41 190 0 GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG
30 30 A A G 3 S+ 0 0 71 190 4 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
31 31 A I G < S+ 0 0 51 190 1 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII
32 32 A I S < S+ 0 0 105 190 4 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII
33 33 A G S S+ 0 0 44 190 3 GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG
34 34 A L S S+ 0 0 170 190 0 LLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLL
35 35 A M S > S- 0 0 43 189 0 MMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMM
36 36 A V T 3 S- 0 0 136 189 2 VVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVV
37 37 A G T 3 S+ 0 0 60 188 0 GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG
38 38 A G S < S+ 0 0 52 187 0 GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG
39 39 A V S S- 0 0 127 186 1 VVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVV
40 40 A V - 0 0 77 186 0 VVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVV
41 41 A I 0 0 104 184 0 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII IIIIIIIIIIIIIIIIIIII
42 42 A A 0 0 132 184 0 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA AAAAAAAAAAAAAAAAAAAA
## ALIGNMENTS 71 - 140
SeqNo PDBNo AA STRUCTURE BP1 BP2 ACC NOCC VAR ....:....8....:....9....:....0....:....1....:....2....:....3....:....4
1 1 A D 0 0 184 188 19 DDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDEDDDDDDDEE
2 2 A A - 0 0 54 188 68 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAATAAAAAAAAAAAAAAAAAAATASSSSSSTA
3 3 A E S S- 0 0 144 189 12 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKE
4 4 A F S > S+ 0 0 150 189 101 FFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFYFFFYYFFFFFFFFFFFFFFFFYYYYYYYFE
5 5 A R T 4 S+ 0 0 232 190 23 RRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRGGRGRRGRGGGGGGGRRRRRRRRRR
6 6 A H T 4 S+ 0 0 97 190 29 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHQHHHHHHHQH
7 7 A D T >> S+ 0 0 72 190 59 DDDDDDDDDDDDDDDDDDDDDDDDDDDDEDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDS
8 8 A S T 3< + 0 0 64 190 61 SSSSSSSSSSSSSSSSSSSSSSSSSSSSSPSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSAAATTTSA
9 9 A G T 34 S+ 0 0 50 190 27 GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGASAAAAGG
10 10 A Y T <> S+ 0 0 121 190 5 YYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYFFYFYYFYFFFFFFFYYYYYYYYYY
11 11 A E H X S+ 0 0 71 190 16 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE
12 12 A V H 4 S+ 0 0 106 190 9 VVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVV
13 13 A H H >4 S+ 0 0 113 190 56 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHRHHHHHHHHHHRHHHRRHRHHRHRRRRRRRHHHHHHHHHH
14 14 A H H >X S+ 0 0 142 190 27 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
15 15 A Q H 3X + 0 0 105 190 36 QQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ
16 16 A K H <4 S- 0 0 149 190 22 KKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKkKKKKKKKK
17 17 A L H X>>S+ 0 0 107 185 3 LLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLvLLLLLLLL
18 18 A V I 3X>S+ 0 0 38 189 20 VVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVV
19 19 A F I 3<5S+ 0 0 105 189 6 FFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFF
20 20 A F I <>5S+ 0 0 130 190 21 FFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFF
21 21 A A I <5S+ 0 0 60 190 10 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAPAAAAAAAPA
22 22 A E I < S+ 0 0 41 190 0 GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG
30 30 A A G 3 S+ 0 0 71 190 4 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
31 31 A I G < S+ 0 0 51 190 1 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII
32 32 A I S < S+ 0 0 105 190 4 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII
33 33 A G S S+ 0 0 44 190 3 GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG
34 34 A L S S+ 0 0 170 190 0 LLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLL
35 35 A M S > S- 0 0 43 189 0 MMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMM
36 36 A V T 3 S- 0 0 136 189 2 VVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVV
37 37 A G T 3 S+ 0 0 60 188 0 GGGGGGGGGGGGGGGG GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG
38 38 A G S < S+ 0 0 52 187 0 GGGGGGGGGGGGGGGG GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG
39 39 A V S S- 0 0 127 186 1 VVVVVVVVVVVVVVVV VVVVVVVVVVVVVVVVVVVVVVVVVIVVVVIVIIVIVVVVVVVVVVVVVVVVV
40 40 A V - 0 0 77 186 0 VVVVVVVVVVVVVVVV VVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVV
41 41 A I 0 0 104 184 0 IIIIIIIIIIIIIIII IIIIIIIIIII IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII
42 42 A A 0 0 132 184 0 AAAAAAAAAAAAAAAA AAAAAAAAAAA AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
## ALIGNMENTS 141 - 189
SeqNo PDBNo AA STRUCTURE BP1 BP2 ACC NOCC VAR ....:....5....:....6....:....7....:....8....:....9....:....0....:....1
1 1 A D 0 0 184 188 19 DDEDDEEEEEEEEEEEEEEEEEEEEEEEEEEEDDDDDD DDDDDD DGG
2 2 A A - 0 0 54 188 68 TTTSSTATSTTTTTTTTTTTTTTTTTTTTTTTTTIIII IIIIII AVV
3 3 A E S S- 0 0 144 189 12 EEEEEEEEEEEEEEEEEEEEDDDDDDDDDDEEEEEEEE EEEEEEDEGG
4 4 A F S > S+ 0 0 150 189 101 EEFYYEEDENDDDDDDDDDDKNKKKKEEEEEEEEEEEE EEEEEEAFFF
5 5 A R T 4 S+ 0 0 232 190 23 RRQRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRII
6 6 A H T 4 S+ 0 0 97 190 29 QQQHHHHQQQQQQQQQQQQQQQQQQQQQQQQQRRHHHHQHHHHHHPHHH
7 7 A D T >> S+ 0 0 72 190 59 SSDDDSNSSSSSSSSSSSSSSSSSSSSSSSSSSSNNNNSNNNNNNADPP
8 8 A S T 3< + 0 0 64 190 61 TASAATATATTTTTTTTTTTAAAAAAAAAAAAAAAAAAAAAAAAAASEE
9 9 A G T 34 S+ 0 0 50 190 27 EGGAAGAEGEEEEEEEEEEEGEGGGGGGGGGGGGGGGGSGGGGGGDGSS
10 10 A Y T <> S+ 0 0 121 190 5 YYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYFYYYYYYRFFF
11 11 A E H X S+ 0 0 71 190 16 EEEEEEEEEEEEEEEEEEEEEAEEEEEEEEEEEEDDDDEDDDDDDGENN
12 12 A V H 4 S+ 0 0 106 190 9 VVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVLVQQ
13 13 A H H >4 S+ 0 0 113 190 56 HYHHHRHHYHHHHHHHHRRHYHYYYYYYYYYYHHRRRRYRRRRRRTRLL
14 14 A H H >X S+ 0 0 142 190 27 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHQQDDDDHDDDDDDTHNN
15 15 A Q H 3X + 0 0 105 190 36 QQQQQQQQQQQQQQQQQQQQQQQQQQEEEEEEKKKKKKEKKKKKKRQTT
16 16 A K H <4 S- 0 0 149 190 22 KKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKQQRRRRKRRRRRRPKDD
17 17 A L H X>>S+ 0 0 107 185 3 LLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLL..LLLLRLLLLLL.L..
18 18 A V I 3X>S+ 0 0 38 189 20 VVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVMMMMVMMMMMMVIN.
19 19 A F I 3<5S+ 0 0 105 189 6 FFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFLFFFFFFFFQ.
20 20 A F I <>5S+ 0 0 130 190 21 FFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFYYLLLLLLLLLLLFQGN
21 21 A A I <5S+ 0 0 60 190 10 AAPAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAASAAAAAAASAQ
22 22 A E I < S+ 0 0 41 190 0 GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG
30 30 A A G 3 S+ 0 0 71 190 4 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAIAA
31 31 A I G < S+ 0 0 51 190 1 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIILII
32 32 A I S < S+ 0 0 105 190 4 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIQII
33 33 A G S S+ 0 0 44 190 3 GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGNGG
34 34 A L S S+ 0 0 170 190 0 LLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLL
35 35 A M S > S- 0 0 43 189 0 MMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMM MM
36 36 A V T 3 S- 0 0 136 189 2 VVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVGV VV
37 37 A G T 3 S+ 0 0 60 188 0 GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG GG
38 38 A G S < S+ 0 0 52 187 0 GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG G GG
39 39 A V S S- 0 0 127 186 1 VVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVV V VV
40 40 A V - 0 0 77 186 0 VVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVV V VV
41 41 A I 0 0 104 184 0 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII I II
42 42 A A 0 0 132 184 0 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA A AA
## SEQUENCE PROFILE AND ENTROPY
SeqNo PDBNo V L I M F W Y G A P S T C H R K Q E N D NOCC NDEL NINS ENTROPY RELENT WEIGHT
1 1 A 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 16 0 82 188 0 0 0.505 16 0.81
2 2 A 1 0 5 0 0 0 0 0 71 0 5 18 0 0 0 0 0 0 0 0 188 0 0 0.897 29 0.31
3 3 A 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 1 0 93 0 6 189 0 0 0.313 10 0.87
4 4 A 0 0 0 0 71 0 6 0 1 0 0 0 0 0 0 3 0 13 1 6 189 0 0 1.018 33 -0.01
5 5 A 0 0 1 0 0 0 0 6 0 0 0 0 0 0 93 0 1 0 0 0 190 0 0 0.311 10 0.76
6 6 A 0 0 0 0 0 0 0 0 0 1 0 0 0 82 1 0 16 0 0 0 190 0 0 0.533 17 0.71
7 7 A 0 0 0 0 0 0 0 0 1 1 17 0 0 0 0 0 0 1 6 75 190 0 0 0.782 26 0.40
8 8 A 0 0 0 0 0 0 0 0 18 1 71 9 0 0 0 0 0 1 0 0 190 0 0 0.846 28 0.39
9 9 A 0 0 0 0 0 0 0 86 4 0 2 0 0 0 0 0 0 7 0 1 190 0 0 0.566 18 0.73
10 10 A 0 0 0 0 8 0 92 0 0 0 0 0 0 0 1 0 0 0 0 0 190 0 0 0.309 10 0.94
11 11 A 0 0 0 0 0 0 0 1 1 0 0 0 0 0 0 0 0 93 1 5 190 0 0 0.329 10 0.84
12 12 A 98 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 190 0 0 0.091 3 0.90
13 13 A 0 1 0 0 0 0 7 0 0 0 0 1 0 77 14 0 0 0 0 0 190 0 0 0.747 24 0.44
14 14 A 0 0 0 0 0 0 0 0 0 0 0 1 0 92 0 0 1 0 1 5 190 0 0 0.354 11 0.72
15 15 A 0 0 0 0 0 0 0 0 0 0 0 1 0 0 1 6 88 4 0 0 190 0 0 0.480 16 0.63
16 16 A 0 0 0 0 0 0 0 0 0 1 0 0 0 0 5 92 1 0 0 1 190 5 1 0.354 11 0.77
17 17 A 1 99 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 185 0 0 0.067 2 0.96
18 18 A 94 0 1 5 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 189 0 0 0.272 9 0.79
19 19 A 0 1 0 0 99 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 189 0 0 0.066 2 0.93
20 20 A 0 6 0 0 92 0 1 1 0 0 0 0 0 0 0 0 1 0 1 0 190 0 0 0.376 12 0.78
21 21 A 0 0 0 0 0 0 0 0 97 2 1 0 0 0 0 0 1 0 0 0 190 0 0 0.172 5 0.90
22 22 A 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 94 1 5 190 0 0 0.281 9 0.88
23 23 A 0 0 1 0 0 0 0 0 0 0 0 0 0 4 0 0 0 4 0 91 190 0 0 0.380 12 0.87
24 24 A 90 0 1 8 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 190 0 0 0.379 12 0.77
25 25 A 0 0 0 0 1 0 0 96 0 0 3 0 0 0 0 0 0 0 1 0 190 0 0 0.206 6 0.89
26 26 A 0 1 0 0 0 0 0 0 0 0 99 0 0 0 0 0 0 0 0 0 190 0 0 0.033 1 0.95
27 27 A 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 100 0 190 0 0 0.000 0 1.00
28 28 A 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 99 0 0 0 0 190 0 0 0.033 1 0.96
29 29 A 0 0 0 0 0 0 0 100 0 0 0 0 0 0 0 0 0 0 0 0 190 0 0 0.000 0 1.00
30 30 A 0 0 1 0 0 0 0 0 99 0 0 0 0 0 0 0 0 0 0 0 190 0 0 0.033 1 0.96
31 31 A 0 1 99 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 190 0 0 0.033 1 0.98
32 32 A 0 0 99 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 190 0 0 0.033 1 0.95
33 33 A 0 0 0 0 0 0 0 99 0 0 0 0 0 0 0 0 0 0 1 0 190 0 0 0.033 1 0.97
34 34 A 0 100 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 190 0 0 0.000 0 1.00
35 35 A 0 0 0 100 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 189 0 0 0.000 0 1.00
36 36 A 99 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 189 0 0 0.033 1 0.97
37 37 A 0 0 0 0 0 0 0 100 0 0 0 0 0 0 0 0 0 0 0 0 188 0 0 0.000 0 1.00
38 38 A 0 0 0 0 0 0 0 100 0 0 0 0 0 0 0 0 0 0 0 0 187 0 0 0.000 0 1.00
39 39 A 97 0 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 186 0 0 0.124 4 0.98
40 40 A 100 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 186 0 0 0.000 0 1.00
41 41 A 0 0 100 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 184 0 0 0.000 0 1.00
42 42 A 0 0 0 0 0 0 0 0 100 0 0 0 0 0 0 0 0 0 0 0 184 0 0 0.000 0 1.00
## INSERTION LIST
AliNo IPOS JPOS Len Sequence
132 17 653 3 kLASv
//