Complet list of 1xnl hssp file
Complete list of 1xnl.hssp file
HSSP HOMOLOGY DERIVED SECONDARY STRUCTURE OF PROTEINS , VERSION 2.0 2011
PDBID 1XNL
THRESHOLD according to: t(L)=(290.15 * L ** -0.562) + 5
REFERENCE Sander C., Schneider R. : Database of homology-derived protein structures. Proteins, 9:56-68 (1991).
CONTACT Maintained at http://www.cmbi.ru.nl/ by Maarten L. Hekkelman
DATE file generated on 2014-05-13
HEADER VIRAL PROTEIN 05-OCT-04 1XNL
COMPND MOL_ID: 1; MOLECULE: MEMBRANE PROTEIN GP37; CHAIN: A; SYNONYM: ASLV/FP
SOURCE MOL_ID: 1; SYNTHETIC: YES; OTHER_DETAILS: THE PEPTIDE WAS CHEMICALLY S
AUTHOR S.F.CHENG,C.W.WU,E.A.KANTCHEV,D.K.CHANG
DBREF 1XNL A 1 28 UNP P03397 ENV_RSVSA 418 445
SEQLENGTH 28
NCHAIN 1 chain(s) in 1XNL data set
NALIGN 273
NOTATION : ID: EMBL/SWISSPROT identifier of the aligned (homologous) protein
NOTATION : STRID: if the 3-D structure of the aligned protein is known, then STRID is the Protein Data Bank identifier as taken
NOTATION : from the database reference or DR-line of the EMBL/SWISSPROT entry
NOTATION : %IDE: percentage of residue identity of the alignment
NOTATION : %SIM (%WSIM): (weighted) similarity of the alignment
NOTATION : IFIR/ILAS: first and last residue of the alignment in the test sequence
NOTATION : JFIR/JLAS: first and last residue of the alignment in the alignend protein
NOTATION : LALI: length of the alignment excluding insertions and deletions
NOTATION : NGAP: number of insertions and deletions in the alignment
NOTATION : LGAP: total length of all insertions and deletions
NOTATION : LSEQ2: length of the entire sequence of the aligned protein
NOTATION : ACCNUM: SwissProt accession number
NOTATION : PROTEIN: one-line description of aligned protein
NOTATION : SeqNo,PDBNo,AA,STRUCTURE,BP1,BP2,ACC: sequential and PDB residue numbers, amino acid (lower case = Cys), secondary
NOTATION : structure, bridge partners, solvent exposure as in DSSP (Kabsch and Sander, Biopolymers 22, 2577-2637(1983)
NOTATION : VAR: sequence variability on a scale of 0-100 as derived from the NALIGN alignments
NOTATION : pair of lower case characters (AvaK) in the alignend sequence bracket a point of insertion in this sequence
NOTATION : dots (....) in the alignend sequence indicate points of deletion in this sequence
NOTATION : SEQUENCE PROFILE: relative frequency of an amino acid type at each position. Asx and Glx are in their
NOTATION : acid/amide form in proportion to their database frequencies
NOTATION : NOCC: number of aligned sequences spanning this position (including the test sequence)
NOTATION : NDEL: number of sequences with a deletion in the test protein at this position
NOTATION : NINS: number of sequences with an insertion in the test protein at this position
NOTATION : ENTROPY: entropy measure of sequence variability at this position
NOTATION : RELENT: relative entropy, i.e. entropy normalized to the range 0-100
NOTATION : WEIGHT: conservation weight
## PROTEINS : identifier and alignment statistics
NR. ID STRID %IDE %WSIM IFIR ILAS JFIR JLAS LALI NGAP LGAP LSEQ2 ACCNUM PROTEIN
1 : A2SXN7_ALV 1.00 1.00 1 28 419 446 28 0 0 607 A2SXN7 Envelope polyprotein OS=Avian leukosis virus GN=env PE=4 SV=1
2 : A4LA62_ALV 1.00 1.00 1 28 430 457 28 0 0 618 A4LA62 Envelope protein OS=Avian leukosis virus GN=env PE=4 SV=1
3 : B1Q2X8_ALV 1.00 1.00 1 28 421 448 28 0 0 609 B1Q2X8 Envelope protein OS=Avian leukosis virus GN=env PE=4 SV=1
4 : B3TFE0_ALV 1.00 1.00 1 28 419 446 28 0 0 607 B3TFE0 Envelope polyprotein OS=Avian leukosis virus GN=env PE=4 SV=1
5 : B3TFE3_ALV 1.00 1.00 1 28 419 446 28 0 0 607 B3TFE3 Envelope polyprotein OS=Avian leukosis virus GN=env PE=4 SV=1
6 : B3TFE6_ALV 1.00 1.00 1 28 418 445 28 0 0 606 B3TFE6 Envelope polyprotein OS=Avian leukosis virus GN=env PE=4 SV=1
7 : E3ULC0_ALV 1.00 1.00 1 28 431 458 28 0 0 618 E3ULC0 Envelope polyprotein OS=Avian leukosis virus GN=env PE=4 SV=1
8 : E3ULC6_ALV 1.00 1.00 1 28 426 453 28 0 0 607 E3ULC6 Envelope polyprotein OS=Avian leukosis virus GN=env PE=4 SV=1
9 : E3UTP0_ALV 1.00 1.00 1 28 422 449 28 0 0 610 E3UTP0 Envelope protein (Precursor) OS=Avian leukosis virus GN=env PE=4 SV=1
10 : E3UTP3_ALV 1.00 1.00 1 28 414 441 28 0 0 602 E3UTP3 Envelope protein (Precursor) OS=Avian leukosis virus GN=env PE=4 SV=1
11 : ENV_AVIR3 1.00 1.00 1 28 95 122 28 0 0 257 P33498 Envelope glycoprotein (Fragment) OS=Avian retrovirus RPL30 GN=env PE=2 SV=1
12 : ENV_RSVP 1.00 1.00 1 28 422 449 28 0 0 603 P03396 Envelope glycoprotein gp95 OS=Rous sarcoma virus (strain Prague C) GN=env PE=1 SV=1
13 : ENV_RSVSA 4JPR 1.00 1.00 1 28 418 445 28 0 0 606 P03397 Envelope glycoprotein gp95 OS=Avian leukosis virus RSA GN=env PE=1 SV=2
14 : F6K7I4_ALV 1.00 1.00 1 28 433 460 28 0 0 614 F6K7I4 Env protein OS=Avian leukosis virus PE=4 SV=1
15 : G1UCY4_ALV 1.00 1.00 1 28 360 387 28 0 0 548 G1UCY4 Envelope protein (Fragment) OS=Avian leukosis virus GN=env PE=4 SV=1
16 : G1UH65_ALV 1.00 1.00 1 28 425 452 28 0 0 612 G1UH65 Envelope protein (Precursor) OS=Avian leukosis virus GN=env PE=4 SV=1
17 : G1UH67_ALV 1.00 1.00 1 28 414 441 28 0 0 601 G1UH67 Envelope protein (Precursor) OS=Avian leukosis virus GN=env PE=4 SV=1
18 : G1UH68_ALV 1.00 1.00 1 28 414 441 28 0 0 601 G1UH68 Envelope protein (Precursor) OS=Avian leukosis virus GN=env PE=4 SV=1
19 : G3CIY1_ALV 1.00 1.00 1 28 357 384 28 0 0 533 G3CIY1 Envelope polyprotein (Fragment) OS=Avian leukosis virus GN=env PE=4 SV=1
20 : H7CE81_ALV 1.00 1.00 1 28 413 440 28 0 0 600 H7CE81 Envelope protein (Precursor) OS=Avian leukosis virus GN=env PE=4 SV=1
21 : H7CEA0_ALV 1.00 1.00 1 28 428 455 28 0 0 616 H7CEA0 Envelope protein (Precursor) OS=Avian leukosis virus GN=env PE=4 SV=1
22 : H7CEA3_ALV 1.00 1.00 1 28 425 452 28 0 0 612 H7CEA3 Envelope protein (Precursor) OS=Avian leukosis virus GN=env PE=4 SV=1
23 : H7CEA6_ALV 1.00 1.00 1 28 222 249 28 0 0 267 H7CEA6 Envelope protein (Fragment) OS=Avian leukosis virus GN=env PE=4 SV=1
24 : H7CEA8_ALV 1.00 1.00 1 28 222 249 28 0 0 267 H7CEA8 Envelope protein (Fragment) OS=Avian leukosis virus GN=env SU PE=4 SV=1
25 : H7CEB0_ALV 1.00 1.00 1 28 93 120 28 0 0 138 H7CEB0 Envelope protein (Fragment) OS=Avian leukosis virus GN=env PE=4 SV=1
26 : H7CEC0_ALV 1.00 1.00 1 28 424 451 28 0 0 612 H7CEC0 Envelope protein (Precursor) OS=Avian leukosis virus GN=env PE=4 SV=1
27 : H7CEC3_ALV 1.00 1.00 1 28 414 441 28 0 0 602 H7CEC3 Envelope protein OS=Avian leukosis virus GN=env PE=4 SV=1
28 : H7CEG4_ALV 1.00 1.00 1 28 414 441 28 0 0 602 H7CEG4 Env protein (Precursor) OS=Avian leukosis virus GN=env PE=4 SV=1
29 : H7CEG7_ALV 1.00 1.00 1 28 414 441 28 0 0 602 H7CEG7 Envelope protein (Precursor) OS=Avian leukosis virus GN=env PE=4 SV=1
30 : H7CEH0_ALV 1.00 1.00 1 28 422 449 28 0 0 609 H7CEH0 Envelope protein (Fragment) OS=Avian leukosis virus GN=env PE=4 SV=1
31 : H7CEH1_ALV 1.00 1.00 1 28 422 449 28 0 0 610 H7CEH1 Envelope protein (Fragment) OS=Avian leukosis virus GN=env PE=4 SV=1
32 : H7CEH2_ALV 1.00 1.00 1 28 422 449 28 0 0 610 H7CEH2 Envelope protein (Fragment) OS=Avian leukosis virus GN=env PE=4 SV=1
33 : H9U3X6_ALV 1.00 1.00 1 28 424 451 28 0 0 612 H9U3X6 Envelope polyprotein OS=Avian leukosis virus GN=env PE=4 SV=1
34 : I2FK93_ALV 1.00 1.00 1 28 414 441 28 0 0 601 I2FK93 Envelope protein OS=Avian leukosis virus GN=env PE=4 SV=1
35 : I4DUG7_ALV 1.00 1.00 1 28 422 449 28 0 0 610 I4DUG7 Envelope protein (Fragment) OS=Avian leukosis virus GN=env PE=4 SV=1
36 : K4IKH7_ALV 1.00 1.00 1 28 361 388 28 0 0 392 K4IKH7 Envelope glycoprotein (Fragment) OS=Avian leukosis virus PE=4 SV=1
37 : K7S8G7_ALV 1.00 1.00 1 28 430 457 28 0 0 618 K7S8G7 Envelope glycoprotein OS=Avian leukosis virus GN=env PE=4 SV=1
38 : K7S8H1_ALV 1.00 1.00 1 28 363 390 28 0 0 451 K7S8H1 Envelope glycoprotein (Fragment) OS=Avian leukosis virus GN=env PE=4 SV=1
39 : K7S8H3_ALV 1.00 1.00 1 28 430 457 28 0 0 618 K7S8H3 Envelope glycoprotein OS=Avian leukosis virus GN=env PE=4 SV=1
40 : K7SEK8_ALV 1.00 1.00 1 28 355 382 28 0 0 543 K7SEK8 Envelope glycoprotein (Fragment) OS=Avian leukosis virus GN=env PE=4 SV=1
41 : K7SEL7_ALV 1.00 1.00 1 28 363 390 28 0 0 451 K7SEL7 Envelope glycoprotein (Fragment) OS=Avian leukosis virus GN=env PE=4 SV=1
42 : K7SHR9_ALV 1.00 1.00 1 28 363 390 28 0 0 451 K7SHR9 Envelope glycoprotein (Fragment) OS=Avian leukosis virus GN=env PE=4 SV=1
43 : K7SHS6_ALV 1.00 1.00 1 28 355 382 28 0 0 543 K7SHS6 Envelope glycoprotein (Fragment) OS=Avian leukosis virus GN=env PE=4 SV=1
44 : K7T5A4_ALV 1.00 1.00 1 28 363 390 28 0 0 451 K7T5A4 Envelope glycoprotein (Fragment) OS=Avian leukosis virus GN=env PE=4 SV=1
45 : K7T5A7_ALV 1.00 1.00 1 28 430 457 28 0 0 618 K7T5A7 Envelope glycoprotein OS=Avian leukosis virus GN=env PE=4 SV=1
46 : K7ZNH1_ALV 1.00 1.00 1 28 419 446 28 0 0 606 K7ZNH1 Envelope protein (Fragment) OS=Avian leukosis virus GN=env PE=4 SV=1
47 : K7ZNH3_ALV 1.00 1.00 1 28 408 435 28 0 0 595 K7ZNH3 Envelope protein (Fragment) OS=Avian leukosis virus GN=env PE=4 SV=1
48 : K7ZNH6_ALV 1.00 1.00 1 28 419 446 28 0 0 600 K7ZNH6 Envelope protein (Fragment) OS=Avian leukosis virus GN=env PE=4 SV=1
49 : K7ZPD2_ALV 1.00 1.00 1 28 408 435 28 0 0 595 K7ZPD2 Envelope protein (Fragment) OS=Avian leukosis virus GN=env PE=4 SV=1
50 : K7ZR32_ALV 1.00 1.00 1 28 408 435 28 0 0 595 K7ZR32 Envelope protein (Fragment) OS=Avian leukosis virus GN=env PE=4 SV=1
51 : K7ZR33_ALV 1.00 1.00 1 28 414 441 28 0 0 601 K7ZR33 Envelope protein (Precursor) OS=Avian leukosis virus GN=env PE=4 SV=1
52 : K7ZST4_ALV 1.00 1.00 1 28 408 435 28 0 0 595 K7ZST4 Envelope protein (Fragment) OS=Avian leukosis virus GN=env PE=4 SV=1
53 : Q03819_9RETR 1.00 1.00 1 26 414 439 26 0 0 595 Q03819 Gp37 (Gp85) OS=Rous sarcoma virus GN=env PE=4 SV=1
54 : Q07453_9RETR 1.00 1.00 1 26 396 421 26 0 0 577 Q07453 Gp37 (6269..6865) (Gp85 (5246..6268)) OS=Rous sarcoma virus GN=env PE=4 SV=1
55 : Q4ZJZ7_RSVSR 1.00 1.00 1 28 425 452 28 0 0 613 Q4ZJZ7 Envelope protein OS=Rous sarcoma virus - Schmidt-Ruppin D GN=env PE=4 SV=1
56 : Q6V5L8_ALV 1.00 1.00 1 28 423 450 28 0 0 610 Q6V5L8 Envelope protein OS=Avian leukosis virus LR-9 PE=4 SV=1
57 : Q77YG9_9RETR 1.00 1.00 1 28 420 447 28 0 0 601 Q77YG9 GPr95 polyprotein OS=Rous sarcoma virus GN=env PE=4 SV=1
58 : Q7SQA0_ALV 1.00 1.00 1 28 424 451 28 0 0 611 Q7SQA0 Envelope protein OS=Avian leukosis virus GN=env PE=4 SV=1
59 : Q83129_AVIMA 1.00 1.00 1 28 419 446 28 0 0 600 Q83129 Env OS=Avian myeloblastosis-associated virus 1/2 GN=env PE=4 SV=1
60 : Q83132_AVIMA 1.00 1.00 1 28 423 450 28 0 0 604 Q83132 Env OS=Avian myeloblastosis-associated virus type 1 GN=env PE=4 SV=1
61 : Q83134_AVIMA 1.00 1.00 1 28 426 453 28 0 0 607 Q83134 Env OS=Avian myeloblastosis-associated virus type 2 GN=env PE=4 SV=1
62 : Q8AM68_ALV 1.00 1.00 1 28 425 452 28 0 0 491 Q8AM68 Envelope protein (Fragment) OS=Avian leukosis virus GN=env PE=4 SV=1
63 : Q8J8U3_ALV 1.00 1.00 1 28 429 456 28 0 0 495 Q8J8U3 Envelope protein (Fragment) OS=Avian leukosis virus GN=env PE=4 SV=1
64 : Q8J8U4_ALV 1.00 1.00 1 28 425 452 28 0 0 491 Q8J8U4 Envelope protein (Fragment) OS=Avian leukosis virus GN=env PE=4 SV=1
65 : Q8J8U5_ALV 1.00 1.00 1 28 425 452 28 0 0 491 Q8J8U5 Envelope protein (Fragment) OS=Avian leukosis virus GN=env PE=4 SV=1
66 : Q8J8U6_ALV 1.00 1.00 1 28 425 452 28 0 0 491 Q8J8U6 Envelope protein (Fragment) OS=Avian leukosis virus GN=env PE=4 SV=1
67 : Q8J8U7_ALV 1.00 1.00 1 28 425 452 28 0 0 491 Q8J8U7 Envelope protein (Fragment) OS=Avian leukosis virus GN=env PE=4 SV=1
68 : Q8J8U8_ALV 1.00 1.00 1 28 425 452 28 0 0 491 Q8J8U8 Envelope protein (Fragment) OS=Avian leukosis virus GN=env PE=4 SV=1
69 : Q90877_9RETR 1.00 1.00 1 28 58 85 28 0 0 246 Q90877 Ev21 envelope (Fragment) OS=Avian endogenous virus ev-21 PE=4 SV=1
70 : Q90VD5_ALV 1.00 1.00 1 28 413 440 28 0 0 601 Q90VD5 Recombinant envelope polyprotein (Fragment) OS=Avian leukosis virus GN=env PE=2 SV=1
71 : Q90VD6_ALV 1.00 1.00 1 28 413 440 28 0 0 601 Q90VD6 Recombinant envelope polyprotein (Fragment) OS=Avian leukosis virus GN=env PE=2 SV=1
72 : Q90VD7_ALV 1.00 1.00 1 28 413 440 28 0 0 601 Q90VD7 Recombinant envelope polyprotein (Fragment) OS=Avian leukosis virus GN=env PE=2 SV=1
73 : Q90VD8_ALV 1.00 1.00 1 28 413 440 28 0 0 601 Q90VD8 Recombinant envelope polyprotein (Fragment) OS=Avian leukosis virus GN=env PE=2 SV=1
74 : Q98WV7_ALV 1.00 1.00 1 28 423 450 28 0 0 611 Q98WV7 Envelope polyprotein (Fragment) OS=Avian leukosis virus PE=4 SV=1
75 : Q98WV9_ALV 1.00 1.00 1 28 426 453 28 0 0 614 Q98WV9 Pr57 env polyprotein OS=Avian leukosis virus PE=4 SV=1
76 : Q98WW1_ALV 1.00 1.00 1 28 428 455 28 0 0 616 Q98WW1 Pr57 env polyprotein OS=Avian leukosis virus PE=4 SV=1
77 : R4QKT0_9RETR 1.00 1.00 1 28 420 447 28 0 0 608 R4QKT0 Envelope protein (Fragment) OS=Tasmanian devil retrovirus GN=env PE=4 SV=1
78 : R4R035_CHICK 1.00 1.00 1 28 428 455 28 0 0 616 R4R035 Envelope polyprotein OS=Gallus gallus PE=4 SV=1
79 : R4RAN1_CHICK 1.00 1.00 1 28 428 455 28 0 0 616 R4RAN1 Envelope polyprotein OS=Gallus gallus PE=4 SV=1
80 : R4RB95_CHICK 1.00 1.00 1 28 428 455 28 0 0 616 R4RB95 Envelope polyprotein OS=Gallus gallus PE=4 SV=1
81 : S5G1R0_ALV 1.00 1.00 1 28 410 437 28 0 0 598 S5G1R0 Envelope protein (Precursor) OS=Avian leukosis virus GN=env PE=4 SV=1
82 : S5G2Q5_ALV 1.00 1.00 1 28 410 437 28 0 0 598 S5G2Q5 Envelope protein (Precursor) OS=Avian leukosis virus GN=env PE=4 SV=1
83 : V5QQH0_ALV 1.00 1.00 1 28 422 449 28 0 0 610 V5QQH0 Env protein (Fragment) OS=Avian leukosis virus PE=4 SV=1
84 : V5QQH6_ALV 1.00 1.00 1 28 418 445 28 0 0 599 V5QQH6 Env protein (Fragment) OS=Avian leukosis virus PE=4 SV=1
85 : V5QQM4_ALV 1.00 1.00 1 28 422 449 28 0 0 610 V5QQM4 Env protein (Fragment) OS=Avian leukosis virus PE=4 SV=1
86 : V5QQU9_ALV 1.00 1.00 1 28 423 450 28 0 0 611 V5QQU9 Env protein (Fragment) OS=Avian leukosis virus PE=4 SV=1
87 : V5QRM6_ALV 1.00 1.00 1 28 417 444 28 0 0 605 V5QRM6 Env protein (Fragment) OS=Avian leukosis virus PE=4 SV=1
88 : V5QSP2_ALV 1.00 1.00 1 28 422 449 28 0 0 610 V5QSP2 Env protein (Fragment) OS=Avian leukosis virus PE=4 SV=1
89 : V5QSY0_ALV 1.00 1.00 1 28 423 450 28 0 0 611 V5QSY0 Env polyprotein (Fragment) OS=Avian leukosis virus PE=4 SV=1
90 : V9VJ35_ALV 1.00 1.00 1 28 414 441 28 0 0 602 V9VJ35 Envelope protein (Precursor) OS=Avian leukosis virus GN=env PE=4 SV=1
91 : W6A2D3_ALV 1.00 1.00 1 28 431 458 28 0 0 618 W6A2D3 Envelope protein OS=Avian leukosis virus PE=4 SV=1
92 : E2DI01_ALV 0.96 0.96 1 28 419 446 28 0 0 606 E2DI01 Envelope polyprotein (Precursor) OS=Avian leukosis virus GN=env PE=4 SV=1
93 : E3ULB7_ALV 0.96 1.00 1 28 426 453 28 0 0 613 E3ULB7 Envelope polyprotein OS=Avian leukosis virus GN=env PE=4 SV=1
94 : E3ULC3_ALV 0.96 0.96 1 28 427 454 28 0 0 615 E3ULC3 Envelope polyprotein OS=Avian leukosis virus GN=env PE=4 SV=1
95 : E3VNS1_ALV 0.96 1.00 1 28 390 417 28 0 0 570 E3VNS1 Envelope protein OS=Avian leukosis virus GN=env PE=4 SV=1
96 : K7ZL58_ALV 0.96 1.00 1 28 418 445 28 0 0 599 K7ZL58 Envelope protein (Precursor) OS=Avian leukosis virus GN=env PE=4 SV=1
97 : O92955_RSVSB 0.96 1.00 1 28 425 452 28 0 0 613 O92955 Envelope glycopolyprotein OS=Rous sarcoma virus (strain Schmidt-Ruppin B) GN=env PE=4 SV=1
98 : E3VNS4_ALV 0.93 1.00 1 28 390 417 28 0 0 570 E3VNS4 Envelope protein OS=Avian leukosis virus GN=env PE=4 SV=1
99 : F5B578_ALV 0.93 1.00 1 28 326 353 28 0 0 506 F5B578 Envelope glycoprotein (Fragment) OS=Avian leukosis virus GN=env PE=4 SV=1
100 : Q85408_AVEV2 0.93 0.96 1 28 58 85 28 0 0 246 Q85408 Avian endogenous virus RAV-0 env gene 3'-region for C-terminal region of envelope glycoproteins gp85 and gp37 (Fragment) OS=Avian endogenous rous-associated virus-0 PE=4 SV=1
101 : A1YLR2_ALV 0.92 1.00 3 28 352 377 26 0 0 530 A1YLR2 Envelope glycoprotein (Fragment) OS=Avian leukosis virus PE=4 SV=1
102 : K9NTC3_ALV 0.89 1.00 1 28 389 416 28 0 0 577 K9NTC3 Envelope protein OS=Avian leukosis virus GN=env PE=4 SV=1
103 : Q5D5K7_ALV 0.89 1.00 1 28 351 378 28 0 0 531 Q5D5K7 Envelope protein (Fragment) OS=Avian leukosis virus GN=env PE=4 SV=1
104 : Q5IX99_ALV 0.89 1.00 1 28 440 467 28 0 0 628 Q5IX99 Envelope protein OS=Avian leukosis virus GN=env PE=4 SV=1
105 : S5Y3I2_ALV 0.89 1.00 1 28 325 352 28 0 0 505 S5Y3I2 Envelope protein (Precursor) OS=Avian leukosis virus GN=env PE=4 SV=1
106 : F5B566_ALV 0.88 1.00 3 28 326 351 26 0 0 504 F5B566 Envelope glycoprotein (Fragment) OS=Avian leukosis virus GN=env PE=4 SV=1
107 : Q5D5K8_ALV 0.88 1.00 3 28 325 350 26 0 0 503 Q5D5K8 Envelope protein (Fragment) OS=Avian leukosis virus GN=env PE=4 SV=1
108 : Q9IGS3_ALV 0.88 1.00 3 28 323 348 26 0 0 501 Q9IGS3 Envelope protein (Fragment) OS=Avian leukosis virus GN=env PE=4 SV=1
109 : Q9IGS5_ALV 0.88 1.00 3 28 326 351 26 0 0 504 Q9IGS5 Envelope protein (Fragment) OS=Avian leukosis virus GN=env PE=4 SV=1
110 : A1YLQ9_ALV 0.86 1.00 1 28 381 408 28 0 0 561 A1YLQ9 Envelope glycoprotein (Fragment) OS=Avian leukosis virus PE=4 SV=1
111 : A1YM15_ALV 0.86 1.00 1 28 381 408 28 0 0 561 A1YM15 Envelope polyprotein (Fragment) OS=Avian leukosis virus PE=4 SV=1
112 : A9UFC1_ALV 0.86 0.96 1 28 392 419 28 0 0 572 A9UFC1 Envelope protein OS=Avian leukosis virus GN=env PE=4 SV=1
113 : A9UFC2_ALV 0.86 0.96 1 28 392 419 28 0 0 572 A9UFC2 Envelope protein OS=Avian leukosis virus GN=env PE=4 SV=1
114 : D9ZFH0_ALV 0.86 1.00 1 28 391 418 28 0 0 571 D9ZFH0 Env protein OS=Avian leukosis virus PE=4 SV=1
115 : D9ZFH1_ALV 0.86 1.00 1 28 388 415 28 0 0 568 D9ZFH1 Env protein OS=Avian leukosis virus PE=4 SV=1
116 : D9ZFH4_ALV 0.86 1.00 1 28 390 417 28 0 0 570 D9ZFH4 Env protein OS=Avian leukosis virus PE=4 SV=1
117 : D9ZFH5_ALV 0.86 1.00 1 28 388 415 28 0 0 568 D9ZFH5 Env protein OS=Avian leukosis virus PE=4 SV=1
118 : E2JJT6_ALV 0.86 1.00 1 28 381 408 28 0 0 561 E2JJT6 Envelope protein (Fragment) OS=Avian leukosis virus GN=env PE=4 SV=1
119 : E5FQV8_ALV 0.86 1.00 1 28 350 377 28 0 0 530 E5FQV8 Env protein (Fragment) OS=Avian leukosis virus GN=env PE=4 SV=1
120 : E5FQV9_ALV 0.86 1.00 1 28 351 378 28 0 0 531 E5FQV9 Env protein (Fragment) OS=Avian leukosis virus GN=env PE=4 SV=1
121 : F2WW26_ALV 0.86 1.00 1 28 354 381 28 0 0 534 F2WW26 Envelope protein (Fragment) OS=Avian leukosis virus GN=env PE=4 SV=1
122 : F2WW27_ALV 0.86 1.00 1 28 350 377 28 0 0 530 F2WW27 Envelope protein (Fragment) OS=Avian leukosis virus GN=env PE=4 SV=1
123 : F2WW28_ALV 0.86 1.00 1 28 351 378 28 0 0 531 F2WW28 Envelope protein (Fragment) OS=Avian leukosis virus GN=env PE=4 SV=1
124 : F2WZ71_ALV 0.86 1.00 1 28 382 409 28 0 0 562 F2WZ71 Envelope protein (Fragment) OS=Avian leukosis virus GN=env PE=4 SV=1
125 : F2WZ72_ALV 0.86 1.00 1 28 382 409 28 0 0 562 F2WZ72 Envelope protein (Fragment) OS=Avian leukosis virus GN=env PE=4 SV=1
126 : F5B568_ALV 0.86 1.00 1 28 324 351 28 0 0 504 F5B568 Envelope glycoprotein (Fragment) OS=Avian leukosis virus GN=env PE=4 SV=1
127 : F5B569_ALV 0.86 1.00 1 28 324 351 28 0 0 504 F5B569 Envelope glycoprotein (Fragment) OS=Avian leukosis virus GN=env PE=4 SV=1
128 : F5B570_ALV 0.86 1.00 1 28 324 351 28 0 0 504 F5B570 Envelope glycoprotein (Fragment) OS=Avian leukosis virus GN=env PE=4 SV=1
129 : F5B571_ALV 0.86 1.00 1 28 324 351 28 0 0 504 F5B571 Envelope glycoprotein (Fragment) OS=Avian leukosis virus GN=env PE=4 SV=1
130 : F5B572_ALV 0.86 1.00 1 28 324 351 28 0 0 504 F5B572 Envelope glycoprotein (Fragment) OS=Avian leukosis virus GN=env PE=4 SV=1
131 : F5B573_ALV 0.86 1.00 1 28 324 351 28 0 0 504 F5B573 Envelope glycoprotein (Fragment) OS=Avian leukosis virus GN=env PE=4 SV=1
132 : F5B575_ALV 0.86 1.00 1 28 324 351 28 0 0 504 F5B575 Envelope glycoprotein (Fragment) OS=Avian leukosis virus GN=env PE=4 SV=1
133 : F5B579_ALV 0.86 1.00 1 28 326 353 28 0 0 506 F5B579 Envelope glycoprotein (Fragment) OS=Avian leukosis virus GN=env PE=4 SV=1
134 : F5B580_ALV 0.86 1.00 1 28 328 355 28 0 0 508 F5B580 Envelope glycoprotein (Fragment) OS=Avian leukosis virus GN=env PE=4 SV=1
135 : G0Z7Q0_ALV 0.86 1.00 1 28 389 416 28 0 0 569 G0Z7Q0 Env protein OS=Avian leukosis virus PE=4 SV=1
136 : G4Y2E0_ALV 0.86 1.00 1 28 388 415 28 0 0 568 G4Y2E0 Envelope protein OS=Avian leukosis virus GN=env PE=4 SV=1
137 : G4Y2E3_ALV 0.86 1.00 1 28 389 416 28 0 0 569 G4Y2E3 Envelope protein OS=Avian leukosis virus GN=env PE=4 SV=1
138 : G4Y2E6_ALV 0.86 1.00 1 28 389 416 28 0 0 569 G4Y2E6 Envelope protein OS=Avian leukosis virus GN=env PE=4 SV=1
139 : G4Y2E8_ALV 0.86 1.00 1 28 388 415 28 0 0 568 G4Y2E8 Envelope protein OS=Avian leukosis virus GN=env PE=4 SV=1
140 : G4Y2F4_ALV 0.86 1.00 1 28 387 414 28 0 0 567 G4Y2F4 Envelope protein OS=Avian leukosis virus GN=env PE=4 SV=1
141 : G9HSQ4_ALV 0.86 1.00 1 28 330 357 28 0 0 510 G9HSQ4 Envelope protein OS=Avian leukosis virus GN=env PE=4 SV=1
142 : G9HSQ7_ALV 0.86 1.00 1 28 331 358 28 0 0 511 G9HSQ7 Envelope protein OS=Avian leukosis virus GN=env PE=4 SV=1
143 : G9I970_ALV 0.86 1.00 1 28 388 415 28 0 0 568 G9I970 Env protein OS=Avian leukosis virus PE=4 SV=1
144 : G9I973_ALV 0.86 1.00 1 28 388 415 28 0 0 568 G9I973 Env protein OS=Avian leukosis virus PE=4 SV=1
145 : H9NAH3_ALV 0.86 1.00 1 28 382 409 28 0 0 562 H9NAH3 Envelope protein (Fragment) OS=Avian leukosis virus GN=env PE=4 SV=1
146 : K7T5B1_ALV 0.86 1.00 1 28 324 351 28 0 0 504 K7T5B1 Envelope glycoprotein (Fragment) OS=Avian leukosis virus GN=env PE=4 SV=1
147 : M1J3Z3_ALV 0.86 1.00 1 28 389 416 28 0 0 569 M1J3Z3 Envelope protein (Precursor) OS=Avian leukosis virus GN=env PE=4 SV=1
148 : M1JNL1_ALV 0.86 1.00 1 28 382 409 28 0 0 562 M1JNL1 Envelope protein (Precursor) OS=Avian leukosis virus GN=env PE=4 SV=1
149 : Q5D5L0_ALV 0.86 1.00 1 28 350 377 28 0 0 530 Q5D5L0 Envelope protein (Fragment) OS=Avian leukosis virus GN=env PE=4 SV=1
150 : Q5D5L4_ALV 0.86 1.00 1 28 350 377 28 0 0 530 Q5D5L4 Envelope protein (Fragment) OS=Avian leukosis virus GN=env PE=4 SV=1
151 : Q7ZFQ2_ALV 0.86 0.96 1 28 391 418 28 0 0 571 Q7ZFQ2 Envelope protein OS=Avian leukosis virus PE=4 SV=1
152 : Q900B0_ALV 0.86 1.00 1 28 324 351 28 0 0 504 Q900B0 Envelope protein (Fragment) OS=Avian leukosis virus PE=2 SV=1
153 : Q90LU1_ALV 0.86 1.00 1 28 388 415 28 0 0 568 Q90LU1 Envelope proteins OS=Avian leukosis virus GN=env PE=4 SV=1
154 : Q9DY00_ALV 0.86 1.00 1 28 320 347 28 0 0 500 Q9DY00 Envelope protein (Fragment) OS=Avian leukosis virus GN=env PE=4 SV=1
155 : Q9IGS6_ALV 0.86 1.00 1 28 325 352 28 0 0 505 Q9IGS6 Envelope protein (Fragment) OS=Avian leukosis virus GN=env PE=4 SV=1
156 : Q9IGS7_ALV 0.86 1.00 1 28 326 353 28 0 0 506 Q9IGS7 Envelope protein (Fragment) OS=Avian leukosis virus GN=env PE=4 SV=1
157 : Q9IGS8_ALV 0.86 1.00 1 28 324 351 28 0 0 504 Q9IGS8 Envelope protein (Fragment) OS=Avian leukosis virus GN=env PE=4 SV=1
158 : Q9IGT2_ALV 0.86 1.00 1 28 326 353 28 0 0 506 Q9IGT2 Envelope protein (Fragment) OS=Avian leukosis virus GN=env PE=4 SV=1
159 : S5TLS9_ALV 0.86 1.00 1 28 324 351 28 0 0 504 S5TLS9 Envelope protein (Fragment) OS=Avian leukosis virus PE=4 SV=1
160 : S5U319_ALV 0.86 1.00 1 28 323 350 28 0 0 503 S5U319 Envelope protein (Fragment) OS=Avian leukosis virus PE=4 SV=1
161 : S5Y9W0_ALV 0.86 1.00 1 28 319 346 28 0 0 499 S5Y9W0 Envelope protein (Precursor) OS=Avian leukosis virus GN=env PE=4 SV=1
162 : S5YG84_ALV 0.86 1.00 1 28 323 350 28 0 0 503 S5YG84 Envelope protein (Precursor) OS=Avian leukosis virus GN=env PE=4 SV=1
163 : W0NI95_ALV 0.86 0.96 1 28 388 415 28 0 0 568 W0NI95 Envelope protein (Precursor) OS=Avian leukosis virus GN=env PE=4 SV=1
164 : W0NIH0_ALV 0.86 1.00 1 28 240 267 28 0 0 420 W0NIH0 Envelope protein (Precursor) OS=Avian leukosis virus GN=env PE=4 SV=1
165 : G4Y2F1_ALV 0.85 1.00 1 26 388 413 26 0 0 568 G4Y2F1 Envelope protein OS=Avian leukosis virus GN=env PE=4 SV=1
166 : Q9QME5_9RETR 0.85 1.00 3 28 259 284 26 0 0 433 Q9QME5 Envelope protein (Fragment) OS=Avian endogenous retrovirus EAV-HP GN=env PE=4 SV=1
167 : Q9QME6_9RETR 0.85 0.96 3 28 259 284 26 0 0 433 Q9QME6 Envelope protein (Fragment) OS=Avian endogenous retrovirus EAV-HP GN=env PE=4 SV=1
168 : Q9QME7_9RETR 0.85 1.00 3 28 259 284 26 0 0 433 Q9QME7 Envelope protein (Fragment) OS=Avian endogenous retrovirus EAV-HP GN=env PE=4 SV=1
169 : Q9QME8_9RETR 0.85 1.00 3 28 259 284 26 0 0 433 Q9QME8 Envelope protein (Fragment) OS=Avian endogenous retrovirus EAV-HP GN=env PE=4 SV=1
170 : A1YLQ8_ALV 0.82 1.00 1 28 382 409 28 0 0 562 A1YLQ8 Envelope glycoprotein (Fragment) OS=Avian leukosis virus PE=4 SV=1
171 : A1YLR0_ALV 0.82 1.00 1 28 381 408 28 0 0 561 A1YLR0 Envelope glycoprotein (Fragment) OS=Avian leukosis virus PE=4 SV=1
172 : A1YLR1_ALV 0.82 1.00 1 28 356 383 28 0 0 536 A1YLR1 Envelope glycoprotein (Fragment) OS=Avian leukosis virus PE=4 SV=1
173 : B6EA47_ALV 0.82 0.96 1 28 389 416 28 0 0 569 B6EA47 Envelope protein OS=Avian leukosis virus PE=4 SV=1
174 : D2KKF1_ALV 0.82 1.00 1 28 328 355 28 0 0 508 D2KKF1 Envelope glycoprotein (Fragment) OS=Avian leukosis virus GN=env PE=4 SV=1
175 : D2KKF2_ALV 0.82 1.00 1 28 328 355 28 0 0 508 D2KKF2 Envelope glycoprotein (Fragment) OS=Avian leukosis virus GN=env PE=4 SV=1
176 : D2KKF3_ALV 0.82 1.00 1 28 328 355 28 0 0 508 D2KKF3 Envelope glycoprotein (Fragment) OS=Avian leukosis virus GN=env PE=4 SV=1
177 : D2KKF4_ALV 0.82 1.00 1 28 328 355 28 0 0 508 D2KKF4 Envelope glycoprotein (Fragment) OS=Avian leukosis virus GN=env PE=4 SV=1
178 : D2KKF5_ALV 0.82 1.00 1 28 328 355 28 0 0 508 D2KKF5 Envelope glycoprotein (Fragment) OS=Avian leukosis virus GN=env PE=4 SV=1
179 : D2KKF6_ALV 0.82 1.00 1 28 328 355 28 0 0 508 D2KKF6 Envelope glycoprotein (Fragment) OS=Avian leukosis virus GN=env PE=4 SV=1
180 : D2KKF7_ALV 0.82 1.00 1 28 328 355 28 0 0 508 D2KKF7 Envelope glycoprotein (Fragment) OS=Avian leukosis virus GN=env PE=4 SV=1
181 : D2KKF8_ALV 0.82 1.00 1 28 328 355 28 0 0 508 D2KKF8 Envelope glycoprotein (Fragment) OS=Avian leukosis virus GN=env PE=4 SV=1
182 : D2KKF9_ALV 0.82 1.00 1 28 328 355 28 0 0 508 D2KKF9 Envelope glycoprotein (Fragment) OS=Avian leukosis virus GN=env PE=4 SV=1
183 : D2KKG0_ALV 0.82 1.00 1 28 328 355 28 0 0 508 D2KKG0 Envelope glycoprotein (Fragment) OS=Avian leukosis virus GN=env PE=4 SV=1
184 : D2KKG1_ALV 0.82 1.00 1 28 328 355 28 0 0 508 D2KKG1 Envelope glycoprotein (Fragment) OS=Avian leukosis virus GN=env PE=4 SV=1
185 : D2KKG2_ALV 0.82 0.96 1 28 328 355 28 0 0 508 D2KKG2 Envelope glycoprotein (Fragment) OS=Avian leukosis virus GN=env PE=4 SV=1
186 : D2KKG3_ALV 0.82 1.00 1 28 328 355 28 0 0 508 D2KKG3 Envelope glycoprotein (Fragment) OS=Avian leukosis virus GN=env PE=4 SV=1
187 : D2KKG4_ALV 0.82 1.00 1 28 328 355 28 0 0 508 D2KKG4 Envelope glycoprotein (Fragment) OS=Avian leukosis virus GN=env PE=4 SV=1
188 : D2KKG5_ALV 0.82 1.00 1 28 328 355 28 0 0 508 D2KKG5 Envelope glycoprotein (Fragment) OS=Avian leukosis virus GN=env PE=4 SV=1
189 : D2KKG6_ALV 0.82 1.00 1 28 328 355 28 0 0 508 D2KKG6 Envelope glycoprotein (Fragment) OS=Avian leukosis virus GN=env PE=4 SV=1
190 : D2KKG7_ALV 0.82 1.00 1 28 328 355 28 0 0 508 D2KKG7 Envelope glycoprotein (Fragment) OS=Avian leukosis virus GN=env PE=4 SV=1
191 : D2KKG8_ALV 0.82 0.96 1 28 328 355 28 0 0 508 D2KKG8 Envelope glycoprotein (Fragment) OS=Avian leukosis virus GN=env PE=4 SV=1
192 : E2G6L8_ALV 0.82 0.96 1 28 352 379 28 0 0 532 E2G6L8 Envelope protein (Fragment) OS=Avian leukosis virus GN=env PE=4 SV=1
193 : E2G6L9_ALV 0.82 0.96 1 28 397 424 28 0 0 577 E2G6L9 Envelope protein OS=Avian leukosis virus GN=env PE=4 SV=1
194 : E2G6M2_ALV 0.82 0.93 1 28 397 424 28 0 0 577 E2G6M2 Envelope protein OS=Avian leukosis virus GN=env PE=4 SV=1
195 : E2G6M8_ALV 0.82 0.96 1 28 397 424 28 0 0 577 E2G6M8 Envelope protein OS=Avian leukosis virus GN=env PE=4 SV=1
196 : E2G6N1_ALV 0.82 0.96 1 28 397 424 28 0 0 577 E2G6N1 Envelope protein OS=Avian leukosis virus GN=env PE=4 SV=1
197 : E2JJT5_ALV 0.82 1.00 1 28 381 408 28 0 0 561 E2JJT5 Envelope protein (Fragment) OS=Avian leukosis virus GN=env PE=4 SV=1
198 : E9N627_ALV 0.82 1.00 1 28 391 418 28 0 0 571 E9N627 Envelope protein OS=Avian leukemia virus GN=env PE=4 SV=1
199 : F2X8D0_ALV 0.82 1.00 1 28 382 409 28 0 0 562 F2X8D0 Envelope protein (Fragment) OS=Avian leukosis virus GN=env PE=4 SV=1
200 : F5B567_ALV 0.82 1.00 1 28 324 351 28 0 0 504 F5B567 Envelope glycoprotein (Fragment) OS=Avian leukosis virus GN=env PE=4 SV=1
201 : F5B576_ALV 0.82 1.00 1 28 323 350 28 0 0 503 F5B576 Envelope glycoprotein (Fragment) OS=Avian leukosis virus GN=env PE=4 SV=1
202 : G3CVJ7_ALV 0.82 1.00 1 28 389 416 28 0 0 569 G3CVJ7 Envelope polyprotein OS=Avian leukosis virus GN=env PE=4 SV=1
203 : G9I976_ALV 0.82 1.00 1 28 387 414 28 0 0 567 G9I976 Env protein OS=Avian leukosis virus PE=4 SV=1
204 : H9NAH2_ALV 0.82 1.00 1 28 381 408 28 0 0 561 H9NAH2 Envelope protein (Fragment) OS=Avian leukosis virus GN=env PE=4 SV=1
205 : H9NAH4_ALV 0.82 1.00 1 28 381 408 28 0 0 561 H9NAH4 Envelope protein (Fragment) OS=Avian leukosis virus GN=env PE=4 SV=1
206 : H9NAH5_ALV 0.82 1.00 1 28 381 408 28 0 0 561 H9NAH5 Envelope protein (Fragment) OS=Avian leukosis virus GN=env PE=4 SV=1
207 : H9NAH6_ALV 0.82 1.00 1 28 384 411 28 0 0 564 H9NAH6 Envelope protein (Fragment) OS=Avian leukosis virus GN=env PE=4 SV=1
208 : H9NAH8_ALV 0.82 1.00 1 28 385 412 28 0 0 565 H9NAH8 Envelope protein (Fragment) OS=Avian leukosis virus GN=env PE=4 SV=1
209 : I0DHJ7_ALV 0.82 1.00 1 28 391 418 28 0 0 571 I0DHJ7 Envelope protein OS=Avian leukemia virus GN=env PE=4 SV=1
210 : I6UKH9_ALV 0.82 1.00 1 28 385 412 28 0 0 565 I6UKH9 Envelope protein OS=Avian leukosis virus GN=env PE=4 SV=1
211 : J7LKV4_ALV 0.82 1.00 1 28 389 416 28 0 0 569 J7LKV4 Envelope protein OS=Avian leukosis virus GN=env PE=4 SV=1
212 : K0A2C2_ALV 0.82 1.00 1 28 388 415 28 0 0 568 K0A2C2 Env protein OS=Avian leukosis virus GN=env PE=4 SV=1
213 : K7SEL3_ALV 0.82 1.00 1 28 325 352 28 0 0 505 K7SEL3 Envelope glycoprotein (Fragment) OS=Avian leukosis virus GN=env PE=4 SV=1
214 : K7SEM2_ALV 0.82 1.00 1 28 389 416 28 0 0 569 K7SEM2 Envelope protein subgroup J OS=Avian leukosis virus GN=env PE=4 SV=1
215 : K7SHR5_ALV 0.82 1.00 1 28 325 352 28 0 0 505 K7SHR5 Envelope glycoprotein (Fragment) OS=Avian leukosis virus GN=env PE=4 SV=1
216 : K7SHS3_ALV 0.82 1.00 1 28 325 352 28 0 0 505 K7SHS3 Envelope glycoprotein (Fragment) OS=Avian leukosis virus GN=env PE=4 SV=1
217 : K7SRX8_ALV 0.82 1.00 1 28 325 352 28 0 0 505 K7SRX8 Envelope glycoprotein (Fragment) OS=Avian leukosis virus GN=env PE=4 SV=1
218 : K7SRY1_ALV 0.82 1.00 1 28 325 352 28 0 0 505 K7SRY1 Envelope glycoprotein (Fragment) OS=Avian leukosis virus GN=env PE=4 SV=1
219 : K7SRY6_ALV 0.82 1.00 1 28 325 352 28 0 0 505 K7SRY6 Envelope glycoprotein (Fragment) OS=Avian leukosis virus GN=env PE=4 SV=1
220 : M4QES0_ALV 0.82 1.00 1 28 350 377 28 0 0 530 M4QES0 Envelope protein (Fragment) OS=Avian leukosis virus GN=env PE=4 SV=1
221 : M4QG40_ALV 0.82 1.00 1 28 350 377 28 0 0 530 M4QG40 Envelope protein (Fragment) OS=Avian leukosis virus GN=env PE=4 SV=1
222 : Q45TR4_ALV 0.82 0.96 1 28 389 416 28 0 0 569 Q45TR4 Envelope protein OS=Avian leukosis virus PE=4 SV=1
223 : Q5D5K1_ALV 0.82 1.00 1 28 353 380 28 0 0 533 Q5D5K1 Envelope protein (Fragment) OS=Avian leukosis virus GN=env PE=4 SV=1
224 : Q5D5K2_ALV 0.82 1.00 1 28 353 380 28 0 0 533 Q5D5K2 Envelope protein (Fragment) OS=Avian leukosis virus GN=env PE=4 SV=1
225 : Q5D5K3_ALV 0.82 1.00 1 28 350 377 28 0 0 530 Q5D5K3 Envelope protein (Fragment) OS=Avian leukosis virus GN=env PE=4 SV=1
226 : Q5D5K4_ALV 0.82 1.00 1 28 350 377 28 0 0 530 Q5D5K4 Envelope protein (Fragment) OS=Avian leukosis virus GN=env PE=4 SV=1
227 : Q5D5K6_ALV 0.82 0.96 1 28 351 378 28 0 0 531 Q5D5K6 Envelope protein (Fragment) OS=Avian leukosis virus GN=env PE=4 SV=1
228 : Q5D5K9_ALV 0.82 0.96 1 28 348 375 28 0 0 528 Q5D5K9 Envelope protein (Fragment) OS=Avian leukosis virus GN=env PE=4 SV=1
229 : Q5D5L1_ALV 0.82 0.96 1 28 340 367 28 0 0 520 Q5D5L1 Envelope protein (Fragment) OS=Avian leukosis virus GN=env PE=4 SV=1
230 : Q5D5L2_ALV 0.82 0.96 1 28 333 360 28 0 0 513 Q5D5L2 Envelope protein (Fragment) OS=Avian leukosis virus GN=env PE=4 SV=1
231 : Q5D5L3_ALV 0.82 0.96 1 28 348 375 28 0 0 528 Q5D5L3 Envelope protein (Fragment) OS=Avian leukosis virus GN=env PE=4 SV=1
232 : Q7ZL99_ALV 0.82 0.96 1 28 339 366 28 0 0 519 Q7ZL99 Envelope protein (Fragment) OS=Avian leukosis virus PE=4 SV=1
233 : Q7ZLA0_ALV 0.82 0.96 1 28 357 384 28 0 0 537 Q7ZLA0 Envelope protein (Fragment) OS=Avian leukosis virus PE=4 SV=1
234 : Q9DLK3_ALV 0.82 1.00 1 28 391 418 28 0 0 571 Q9DLK3 Envelope protein OS=Avian leukosis virus GN=env PE=4 SV=1
235 : Q9DLK4_ALV 0.82 1.00 1 28 388 415 28 0 0 580 Q9DLK4 Envelope protein OS=Avian leukosis virus GN=env PE=4 SV=1
236 : Q9DLK5_ALV 0.82 1.00 1 28 390 417 28 0 0 570 Q9DLK5 Envelope protein OS=Avian leukosis virus GN=env PE=4 SV=1
237 : Q9IGS9_ALV 0.82 1.00 1 28 324 351 28 0 0 504 Q9IGS9 Envelope protein (Fragment) OS=Avian leukosis virus GN=env PE=4 SV=1
238 : Q9IGT0_ALV 0.82 1.00 1 28 326 353 28 0 0 506 Q9IGT0 Envelope protein (Fragment) OS=Avian leukosis virus GN=env PE=4 SV=1
239 : Q9IGT1_ALV 0.82 1.00 1 28 325 352 28 0 0 517 Q9IGT1 Envelope protein (Fragment) OS=Avian leukosis virus GN=env PE=4 SV=1
240 : R9W0G5_ALV 0.82 1.00 1 28 387 414 28 0 0 567 R9W0G5 Envelope protein OS=Avian leukosis virus PE=4 SV=1
241 : S5TD28_ALV 0.82 1.00 1 28 325 352 28 0 0 505 S5TD28 Envelope protein (Fragment) OS=Avian leukosis virus PE=4 SV=1
242 : S5YTH6_ALV 0.82 1.00 1 28 324 351 28 0 0 504 S5YTH6 Envelope protein (Precursor) OS=Avian leukosis virus GN=env PE=4 SV=1
243 : S5ZBH4_ALV 0.82 1.00 1 28 323 350 28 0 0 503 S5ZBH4 Envelope protein (Precursor) OS=Avian leukosis virus GN=env PE=4 SV=1
244 : W0NMI2_ALV 0.82 0.96 1 28 389 416 28 0 0 569 W0NMI2 Envelope protein (Precursor) OS=Avian leukosis virus GN=env PE=4 SV=1
245 : W0NXH9_9RETR 0.82 1.00 1 28 383 410 28 0 0 563 W0NXH9 Env protein (Fragment) OS=Avian retrovirus PE=4 SV=1
246 : D2KKG9_ALV 0.79 1.00 1 28 328 355 28 0 0 508 D2KKG9 Envelope glycoprotein (Fragment) OS=Avian leukosis virus GN=env PE=4 SV=1
247 : E2G6M5_ALV 0.79 0.96 1 28 395 422 28 0 0 575 E2G6M5 Envelope protein OS=Avian leukosis virus GN=env PE=4 SV=1
248 : E2J409_ALV 0.79 0.96 1 28 391 418 28 0 0 571 E2J409 Envelope OS=Avian leukosis virus PE=4 SV=1
249 : F2X8C9_ALV 0.79 0.96 1 28 383 410 28 0 0 563 F2X8C9 Envelope protein (Fragment) OS=Avian leukosis virus GN=env PE=4 SV=1
250 : F5B574_ALV 0.79 0.96 1 28 324 351 28 0 0 504 F5B574 Envelope glycoprotein (Fragment) OS=Avian leukosis virus GN=env PE=4 SV=1
251 : G1D8V9_ALV 0.79 1.00 1 28 388 415 28 0 0 568 G1D8V9 Envelope protein OS=Avian leukosis virus GN=env PE=4 SV=1
252 : G4XPB2_9RETR 0.79 0.96 1 28 944 971 28 0 0 1124 G4XPB2 Gag polyprotein OS=Avian endogenous retrovirus EAV-HP GN=gag PE=4 SV=1
253 : Q5D5K5_ALV 0.79 0.96 1 28 351 378 28 0 0 531 Q5D5K5 Envelope protein (Fragment) OS=Avian leukosis virus GN=env PE=4 SV=1
254 : Q5D5L5_ALV 0.79 0.96 1 28 353 380 28 0 0 533 Q5D5L5 Envelope protein (Fragment) OS=Avian leukosis virus GN=env PE=4 SV=1
255 : Q64997_ALV 0.79 0.96 1 28 389 416 28 0 0 569 Q64997 Envelope protein subgroup J OS=Avian leukosis virus HPRS103 GN=env PE=4 SV=1
256 : Q6A2B2_9RETR 0.79 0.96 1 28 389 416 28 0 0 569 Q6A2B2 Envelope glycoprotein OS=Avian endogenous retrovirus EAV-HP GN=env PE=4 SV=1
257 : Q6A2B5_9RETR 0.79 0.96 1 28 389 416 28 0 0 569 Q6A2B5 Envelope glycoprotein OS=Avian endogenous retrovirus EAV-HP GN=env PE=4 SV=1
258 : Q7ZZV5_CHICK 0.79 0.96 1 28 389 416 28 0 0 569 Q7ZZV5 Envelope protein OS=Gallus gallus PE=4 SV=1
259 : Q9DLK2_ALV 0.79 1.00 1 28 391 418 28 0 0 571 Q9DLK2 Envelope protein OS=Avian leukosis virus GN=env PE=4 SV=1
260 : Q9IGS4_ALV 0.79 0.96 1 28 325 352 28 0 0 505 Q9IGS4 Envelope protein (Fragment) OS=Avian leukosis virus GN=env PE=4 SV=1
261 : Q9PWB9_CHICK 0.79 0.96 1 28 923 950 28 0 0 1103 Q9PWB9 Gag/env fusion protein OS=Gallus gallus PE=4 SV=1
262 : Q9QME4_9RETR 0.79 0.96 1 28 945 972 28 0 0 1125 Q9QME4 Gag-env fusion protein OS=Avian endogenous retrovirus EAV-HP GN=gag-env PE=4 SV=1
263 : R4MNY4_CHICK 0.79 0.96 1 28 957 984 28 0 0 1137 R4MNY4 Gag-env fusion protein OS=Gallus gallus GN=gag-env PE=4 SV=1
264 : R4MXF2_CHICK 0.79 0.96 1 28 943 970 28 0 0 1123 R4MXF2 Gag-env fusion protein OS=Gallus gallus GN=gag-env PE=4 SV=1
265 : S5TD34_ALV 0.79 0.96 1 28 325 352 28 0 0 505 S5TD34 Envelope protein (Fragment) OS=Avian leukosis virus PE=4 SV=1
266 : S5TEB1_ALV 0.79 0.96 1 28 325 352 28 0 0 505 S5TEB1 Envelope protein (Fragment) OS=Avian leukosis virus PE=4 SV=1
267 : S5U3W9_ALV 0.79 0.96 1 28 324 351 28 0 0 504 S5U3W9 Envelope protein (Fragment) OS=Avian leukosis virus PE=4 SV=1
268 : V9H0G0_CHICK 0.79 0.96 1 28 389 416 28 0 0 569 V9H0G0 Envelope protein OS=Gallus gallus PE=4 SV=1
269 : Q9YTU4_9RETR 0.77 0.96 3 28 196 221 26 0 0 374 Q9YTU4 Envelope protein (Fragment) OS=Avian endogenous virus GN=env PE=4 SV=1
270 : O73908_CHICK 0.75 0.93 1 28 264 291 28 0 0 444 O73908 Endogenous retroviral envelope protein (Fragment) OS=Gallus gallus GN=EAV-HP PE=4 SV=1
271 : F5B577_ALV 0.71 0.96 1 28 325 352 28 0 0 505 F5B577 Envelope glycoprotein (Fragment) OS=Avian leukosis virus GN=env PE=4 SV=1
272 : G3CIY0_ALV 0.58 0.88 1 24 385 408 24 0 0 562 G3CIY0 Envelope polyprotein (Fragment) OS=Avian leukosis virus GN=env PE=4 SV=1
273 : H9NAH7_ALV 0.58 0.88 1 24 385 408 24 0 0 562 H9NAH7 Envelope protein (Fragment) OS=Avian leukosis virus GN=env PE=4 SV=1
## ALIGNMENTS 1 - 70
SeqNo PDBNo AA STRUCTURE BP1 BP2 ACC NOCC VAR ....:....1....:....2....:....3....:....4....:....5....:....6....:....7
1 1 A G >> 0 0 111 264 48 GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG
2 2 A P T 34 + 0 0 73 264 68 PPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPP
3 3 A T T 34 S+ 0 0 71 274 0 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
4 4 A A T <4 S+ 0 0 61 274 0 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
5 5 A R S < S+ 0 0 51 274 1 RRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRR
6 6 A I S >> S+ 0 0 34 274 2 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII
7 7 A F T 34 S+ 0 0 44 274 0 FFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFF
8 8 A A T 34 S+ 0 0 44 274 0 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
9 9 A S T <4 S+ 0 0 35 274 0 SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
10 10 A I S < S+ 0 0 60 274 43 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII
11 11 A L S S+ 0 0 31 274 15 LLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLL
12 12 A A S > S+ 0 0 48 274 0 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
13 13 A P T 4 S+ 0 0 81 274 0 PPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPP
14 14 A G T 4 S+ 0 0 45 274 0 GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG
15 15 A V T > S+ 0 0 33 274 7 VVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVV
16 16 A A H X S+ 0 0 65 274 0 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
17 17 A A H > S+ 0 0 45 274 0 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
18 18 A A H > S+ 0 0 51 274 0 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
19 19 A Q H X S+ 0 0 56 274 0 QQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ
20 20 A A H X S+ 0 0 61 274 4 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
21 21 A L H < S+ 0 0 63 274 3 LLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLL
22 22 A R H < S+ 0 0 43 274 35 RRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRR
23 23 A E H X S+ 0 0 48 274 4 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE
24 24 A I H X S+ 0 0 59 274 2 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII
25 25 A E H 4 S+ 0 0 59 272 0 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE
26 26 A R H 4 S+ 0 0 58 272 0 RRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRR
27 27 A L H < 0 0 80 269 0 LLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLL LLLLLLLLLLLLLLLL
28 28 A A < 0 0 96 269 0 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA AAAAAAAAAAAAAAAA
## ALIGNMENTS 71 - 140
SeqNo PDBNo AA STRUCTURE BP1 BP2 ACC NOCC VAR ....:....8....:....9....:....0....:....1....:....2....:....3....:....4
1 1 A G >> 0 0 111 264 48 GGGGGGGGGGGGGGGGGGGGGGGGGGGGGG SGSS SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
2 2 A P T 34 + 0 0 73 264 68 PPPPPPPPPPPPPPPPPPPPPPPPPPPPPP APAA AAVVAAAAAAAAAAAAAAAAAAAAAAAAAAA
3 3 A T T 34 S+ 0 0 71 274 0 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
4 4 A A T <4 S+ 0 0 61 274 0 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
5 5 A R S < S+ 0 0 51 274 1 RRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRR
6 6 A I S >> S+ 0 0 34 274 2 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII
7 7 A F T 34 S+ 0 0 44 274 0 FFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFF
8 8 A A T 34 S+ 0 0 44 274 0 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
9 9 A S T <4 S+ 0 0 35 274 0 SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
10 10 A I S < S+ 0 0 60 274 43 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIFIFIIFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFF
11 11 A L S S+ 0 0 31 274 15 LLLLLLLLLLLLLLLLLLLLLLLLLLLLLFFFFLFFFFFFFFFFFFFLFFFFFFFFFFFFFFFFFFFFFF
12 12 A A S > S+ 0 0 48 274 0 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
13 13 A P T 4 S+ 0 0 81 274 0 PPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPP
14 14 A G T 4 S+ 0 0 45 274 0 GGGGGGGGGGGGGGGGGGGGGGGEGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG
15 15 A V T > S+ 0 0 33 274 7 VVVVVVVVVVVVVVVVVVVVVVVVVIVIIVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVV
16 16 A A H X S+ 0 0 65 274 0 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
17 17 A A H > S+ 0 0 45 274 0 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
18 18 A A H > S+ 0 0 51 274 0 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
19 19 A Q H X S+ 0 0 56 274 0 QQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ
20 20 A A H X S+ 0 0 61 274 4 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
21 21 A L H < S+ 0 0 63 274 3 LLLLLLLLLLLLLLLLLLLLLSLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLL
22 22 A R H < S+ 0 0 43 274 35 RRRRRRRRRRRRRRRRRRRRRRKRKRKKKRRRKKRKKKKRRRRRRRRKRRRRRRRRRRRRRRRRRRRRRR
23 23 A E H X S+ 0 0 48 274 4 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE
24 24 A I H X S+ 0 0 59 274 2 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII
25 25 A E H 4 S+ 0 0 59 272 0 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE
26 26 A R H 4 S+ 0 0 58 272 0 RRRRRRRRRRRRRRRRRRRRRRRRRRRRRSRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRR
27 27 A L H < 0 0 80 269 0 LLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLL
28 28 A A < 0 0 96 269 0 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
## ALIGNMENTS 141 - 210
SeqNo PDBNo AA STRUCTURE BP1 BP2 ACC NOCC VAR ....:....5....:....6....:....7....:....8....:....9....:....0....:....1
1 1 A G >> 0 0 111 264 48 SSSSSSSSSSSSSSSSSSSSSSSSS SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
2 2 A P T 34 + 0 0 73 264 68 AAAAAAAAAAVAAAAAAAAAAAVAA AAAVAAAAAAAAAAAAAAAAAVVVVVVAAAAAAAAAAAAAA
3 3 A T T 34 S+ 0 0 71 274 0 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
4 4 A A T <4 S+ 0 0 61 274 0 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
5 5 A R S < S+ 0 0 51 274 1 RRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRR
6 6 A I S >> S+ 0 0 34 274 2 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII
7 7 A F T 34 S+ 0 0 44 274 0 FFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFF
8 8 A A T 34 S+ 0 0 44 274 0 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
9 9 A S T <4 S+ 0 0 35 274 0 SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
10 10 A I S < S+ 0 0 60 274 43 FFFFFFFFFFFFFFFFFFFFFFFFLFFFFFFFFFFFFFFFFFFFSFFFFFFFFSFFFFFFFFFFFFFFFF
11 11 A L S S+ 0 0 31 274 15 FFFFLFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFF
12 12 A A S > S+ 0 0 48 274 0 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
13 13 A P T 4 S+ 0 0 81 274 0 PPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPP
14 14 A G T 4 S+ 0 0 45 274 0 GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG
15 15 A V T > S+ 0 0 33 274 7 VVVVVVVVVVVVVVVVVVVVVVVVVIIIIVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVV
16 16 A A H X S+ 0 0 65 274 0 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
17 17 A A H > S+ 0 0 45 274 0 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
18 18 A A H > S+ 0 0 51 274 0 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
19 19 A Q H X S+ 0 0 56 274 0 QQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ
20 20 A A H X S+ 0 0 61 274 4 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
21 21 A L H < S+ 0 0 63 274 3 LLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLL
22 22 A R H < S+ 0 0 43 274 35 RRRRKRRRRRRRRRRRRRRRRRRRRKEKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKK
23 23 A E H X S+ 0 0 48 274 4 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE
24 24 A I H X S+ 0 0 59 274 2 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII
25 25 A E H 4 S+ 0 0 59 272 0 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE
26 26 A R H 4 S+ 0 0 58 272 0 RRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRR
27 27 A L H < 0 0 80 269 0 LLLLLLLLLLLLLLLLLLLLLLLL LLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLL
28 28 A A < 0 0 96 269 0 AAAAAAAAAAAAAAAAAAAAAAAA AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
## ALIGNMENTS 211 - 273
SeqNo PDBNo AA STRUCTURE BP1 BP2 ACC NOCC VAR ....:....2....:....3....:....4....:....5....:....6....:....7....:....8
1 1 A G >> 0 0 111 264 48 SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS SSSS
2 2 A P T 34 + 0 0 73 264 68 AAAAAAAAAAAVAAAAVVVVVVVAAAAAAAAAAVAAAVVVAVVVVVVVAVVVVVVVVV VVAA
3 3 A T T 34 S+ 0 0 71 274 0 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
4 4 A A T <4 S+ 0 0 61 274 0 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
5 5 A R S < S+ 0 0 51 274 1 RRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRQRR
6 6 A I S >> S+ 0 0 34 274 2 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIRILII
7 7 A F T 34 S+ 0 0 44 274 0 FFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFYFFFFFFFFFFFFFFFFFFFFFFLFFFF
8 8 A A T 34 S+ 0 0 44 274 0 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
9 9 A S T <4 S+ 0 0 35 274 0 SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
10 10 A I S < S+ 0 0 60 274 43 FFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFF
11 11 A L S S+ 0 0 31 274 15 FFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFF
12 12 A A S > S+ 0 0 48 274 0 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
13 13 A P T 4 S+ 0 0 81 274 0 PPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPRPPP
14 14 A G T 4 S+ 0 0 45 274 0 GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG
15 15 A V T > S+ 0 0 33 274 7 VVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVIIIIIVVIIIIIIIIIIIIIIIIIII
16 16 A A H X S+ 0 0 65 274 0 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
17 17 A A H > S+ 0 0 45 274 0 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
18 18 A A H > S+ 0 0 51 274 0 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAVAAAAAAAAAAAAAAAAAAAAAAAAAA
19 19 A Q H X S+ 0 0 56 274 0 QQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ
20 20 A A H X S+ 0 0 61 274 4 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAPPAAAAAAAAAAAAAAAAAEE
21 21 A L H < S+ 0 0 63 274 3 LLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLII
22 22 A R H < S+ 0 0 43 274 35 KKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKQKKKKKKKKKKKKKKKKKKKKKKKKKEE
23 23 A E H X S+ 0 0 48 274 4 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEERR
24 24 A I H X S+ 0 0 59 274 2 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIILL
25 25 A E H 4 S+ 0 0 59 272 0 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE
26 26 A R H 4 S+ 0 0 58 272 0 RRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRR
27 27 A L H < 0 0 80 269 0 LLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLL
28 28 A A < 0 0 96 269 0 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
## SEQUENCE PROFILE AND ENTROPY
SeqNo PDBNo V L I M F W Y G A P S T C H R K Q E N D NOCC NDEL NINS ENTROPY RELENT WEIGHT
1 1 A 0 0 0 0 0 0 0 39 0 0 61 0 0 0 0 0 0 0 0 0 264 0 0 0.667 22 0.52
2 2 A 16 0 0 0 0 0 0 0 46 39 0 0 0 0 0 0 0 0 0 0 264 0 0 1.014 33 0.31
3 3 A 0 0 0 0 0 0 0 0 0 0 0 100 0 0 0 0 0 0 0 0 274 0 0 0.000 0 1.00
4 4 A 0 0 0 0 0 0 0 0 100 0 0 0 0 0 0 0 0 0 0 0 274 0 0 0.000 0 1.00
5 5 A 0 0 0 0 0 0 0 0 0 0 0 0 0 0 100 0 0 0 0 0 274 0 0 0.024 0 0.99
6 6 A 0 0 99 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 274 0 0 0.048 1 0.98
7 7 A 0 0 0 0 99 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 274 0 0 0.048 1 1.00
8 8 A 0 0 0 0 0 0 0 0 100 0 0 0 0 0 0 0 0 0 0 0 274 0 0 0.000 0 1.00
9 9 A 0 0 0 0 0 0 0 0 0 0 100 0 0 0 0 0 0 0 0 0 274 0 0 0.000 0 1.00
10 10 A 0 0 38 0 61 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 274 0 0 0.726 24 0.56
11 11 A 0 38 0 0 62 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 274 0 0 0.662 22 0.84
12 12 A 0 0 0 0 0 0 0 0 100 0 0 0 0 0 0 0 0 0 0 0 274 0 0 0.000 0 1.00
13 13 A 0 0 0 0 0 0 0 0 0 100 0 0 0 0 0 0 0 0 0 0 274 0 0 0.024 0 0.99
14 14 A 0 0 0 0 0 0 0 100 0 0 0 0 0 0 0 0 0 0 0 0 274 0 0 0.024 0 0.99
15 15 A 89 0 11 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 274 0 0 0.353 11 0.92
16 16 A 0 0 0 0 0 0 0 0 100 0 0 0 0 0 0 0 0 0 0 0 274 0 0 0.000 0 1.00
17 17 A 0 0 0 0 0 0 0 0 100 0 0 0 0 0 0 0 0 0 0 0 274 0 0 0.000 0 1.00
18 18 A 0 0 0 0 0 0 0 0 100 0 0 0 0 0 0 0 0 0 0 0 274 0 0 0.024 0 0.99
19 19 A 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 100 0 0 0 274 0 0 0.000 0 1.00
20 20 A 0 0 0 0 0 0 0 0 99 1 0 0 0 0 0 0 0 1 0 0 274 0 0 0.086 2 0.95
21 21 A 0 99 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 274 0 0 0.067 2 0.97
22 22 A 0 0 0 0 0 0 0 0 0 0 0 0 0 0 56 43 0 1 0 0 274 0 0 0.759 25 0.64
23 23 A 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 99 0 0 274 0 0 0.043 1 0.95
24 24 A 0 1 99 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 274 0 0 0.043 1 0.98
25 25 A 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 100 0 0 272 0 0 0.000 0 1.00
26 26 A 0 0 0 0 0 0 0 0 0 0 0 0 0 0 100 0 0 0 0 0 272 0 0 0.024 0 0.99
27 27 A 0 100 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 269 0 0 0.000 0 1.00
28 28 A 0 0 0 0 0 0 0 0 100 0 0 0 0 0 0 0 0 0 0 0 269 0 0 0.000 0 1.00
## INSERTION LIST
AliNo IPOS JPOS Len Sequence
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