Complet list of 1xjh hssp file
Complete list of 1xjh.hssp file
HSSP HOMOLOGY DERIVED SECONDARY STRUCTURE OF PROTEINS , VERSION 2.0 2011
PDBID 1XJH
THRESHOLD according to: t(L)=(290.15 * L ** -0.562) + 5
REFERENCE Sander C., Schneider R. : Database of homology-derived protein structures. Proteins, 9:56-68 (1991).
CONTACT Maintained at http://www.cmbi.ru.nl/ by Maarten L. Hekkelman
DATE file generated on 2014-05-12
HEADER CHAPERONE 23-SEP-04 1XJH
COMPND MOL_ID: 1; MOLECULE: 33 KDA CHAPERONIN; CHAIN: A; FRAGMENT: C-TERMINAL
SOURCE MOL_ID: 1; ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; ORGANISM_TAXID: 562;
AUTHOR H.S.WON,L.Y.LOW,R.N.DE GUZMAN,M.A.MARTINEZ-YAMOUT,U.JAKOB, H.J.DYSON
DBREF 1XJH A 2 62 UNP P0A6Y5 HSLO_ECOLI 225 285
SEQLENGTH 62
NCHAIN 1 chain(s) in 1XJH data set
NALIGN 3
NOTATION : ID: EMBL/SWISSPROT identifier of the aligned (homologous) protein
NOTATION : STRID: if the 3-D structure of the aligned protein is known, then STRID is the Protein Data Bank identifier as taken
NOTATION : from the database reference or DR-line of the EMBL/SWISSPROT entry
NOTATION : %IDE: percentage of residue identity of the alignment
NOTATION : %SIM (%WSIM): (weighted) similarity of the alignment
NOTATION : IFIR/ILAS: first and last residue of the alignment in the test sequence
NOTATION : JFIR/JLAS: first and last residue of the alignment in the alignend protein
NOTATION : LALI: length of the alignment excluding insertions and deletions
NOTATION : NGAP: number of insertions and deletions in the alignment
NOTATION : LGAP: total length of all insertions and deletions
NOTATION : LSEQ2: length of the entire sequence of the aligned protein
NOTATION : ACCNUM: SwissProt accession number
NOTATION : PROTEIN: one-line description of aligned protein
NOTATION : SeqNo,PDBNo,AA,STRUCTURE,BP1,BP2,ACC: sequential and PDB residue numbers, amino acid (lower case = Cys), secondary
NOTATION : structure, bridge partners, solvent exposure as in DSSP (Kabsch and Sander, Biopolymers 22, 2577-2637(1983)
NOTATION : VAR: sequence variability on a scale of 0-100 as derived from the NALIGN alignments
NOTATION : pair of lower case characters (AvaK) in the alignend sequence bracket a point of insertion in this sequence
NOTATION : dots (....) in the alignend sequence indicate points of deletion in this sequence
NOTATION : SEQUENCE PROFILE: relative frequency of an amino acid type at each position. Asx and Glx are in their
NOTATION : acid/amide form in proportion to their database frequencies
NOTATION : NOCC: number of aligned sequences spanning this position (including the test sequence)
NOTATION : NDEL: number of sequences with a deletion in the test protein at this position
NOTATION : NINS: number of sequences with an insertion in the test protein at this position
NOTATION : ENTROPY: entropy measure of sequence variability at this position
NOTATION : RELENT: relative entropy, i.e. entropy normalized to the range 0-100
NOTATION : WEIGHT: conservation weight
## PROTEINS : identifier and alignment statistics
NR. ID STRID %IDE %WSIM IFIR ILAS JFIR JLAS LALI NGAP LGAP LSEQ2 ACCNUM PROTEIN
1 : V0UEH8_ECOLX 0.98 1.00 2 62 25 85 61 0 0 92 V0UEH8 Putative chaperonin HslO OS=Escherichia coli 907715 GN=HMPREF1600_00223 PE=3 SV=1
2 : V2BP64_SALDE 0.95 1.00 2 62 35 95 61 0 0 102 V2BP64 Hsp33-like chaperonin OS=Salmonella enterica subsp. enterica serovar Derby str. 626 GN=hslO PE=3 SV=1
3 : W1X4M9_ECOLX 0.74 0.74 2 62 20 101 82 1 21 108 W1X4M9 33 kDa chaperonin (Fragment) OS=Escherichia coli DORA_A_5_14_21 GN=Q609_ECAC01310G0001 PE=3 SV=1
## ALIGNMENTS 1 - 3
SeqNo PDBNo AA STRUCTURE BP1 BP2 ACC NOCC VAR ....:....1....:....2....:....3....:....4....:....5....:....6....:....7
1 1 A M 0 0 241 1 0
2 2 A D - 0 0 135 4 44 DND
3 3 A V - 0 0 85 4 0 VVV
4 4 A E S S+ 0 0 211 4 0 EEE
5 5 A F + 0 0 156 4 0 FFF
6 6 A K - 0 0 116 4 0 KKK
7 7 A C - 0 0 21 4 0 CCC
8 8 A T S S+ 0 0 121 4 0 TTT
9 9 A C S S- 0 0 42 4 0 CCC
10 10 A S >> - 0 0 65 4 0 SSS
11 11 A R H 3> S+ 0 0 89 4 0 RRR
12 12 A E H 3> S+ 0 0 99 4 0 EEE
13 13 A R H <> S+ 0 0 115 4 0 RRR
14 14 A C H X S+ 0 0 0 4 0 CCC
15 15 A A H X S+ 0 0 3 4 0 AAA
16 16 A D H X S+ 0 0 93 4 44 DGD
17 17 A A H < S+ 0 0 22 4 0 AAA
18 18 A L H >< S+ 0 0 7 4 0 LLL
19 19 A K H 3< S+ 0 0 75 4 0 KKK
20 20 A T T 3< S+ 0 0 108 4 0 TTT
21 21 A L S < S- 0 0 68 4 0 LLL
22 22 A P > - 0 0 70 4 0 PPp
23 23 A D H > S+ 0 0 98 4 0 DDd
24 24 A E H > S+ 0 0 161 4 0 EEE
25 25 A E H > S+ 0 0 101 4 0 EEE
26 26 A V H X S+ 0 0 7 4 0 VVV
27 27 A D H X S+ 0 0 107 4 0 DDD
28 28 A S H < S+ 0 0 59 4 0 SSS
29 29 A I H >X>S+ 0 0 71 4 0 III
30 30 A L H 3X5S+ 0 0 33 4 0 LLL
31 31 A A H 3<5S+ 0 0 80 4 36 TAA
32 32 A E H <45S+ 0 0 172 4 0 EEE
33 33 A D H <5S- 0 0 120 4 27 DED
34 34 A G S < - 0 0 3 4 0 CCC
41 41 A D T 4 S+ 0 0 128 4 0 DDD
42 42 A Y T 4 S+ 0 0 158 4 0 YYY
43 43 A C T 4 S- 0 0 41 4 0 CCC
44 44 A G < + 0 0 42 4 0 GGG
45 45 A N - 0 0 18 4 0 NNN
46 46 A H E +A 39 0A 107 4 0 HHH
47 47 A Y E -A 38 0A 68 4 0 YYY
48 48 A L E -A 37 0A 102 4 0 LLL
49 49 A F E -A 36 0A 1 4 0 FFF
50 50 A N E > -A 35 0A 74 4 0 NNN
51 51 A A H > S+ 0 0 45 4 0 AAA
52 52 A M H > S+ 0 0 140 4 0 MMM
53 53 A D H > S+ 0 0 34 4 0 DDD
54 54 A I H X S+ 0 0 13 4 0 III
55 55 A A H < S+ 0 0 39 4 0 AAA
56 56 A E H >< S+ 0 0 139 4 0 EEE
57 57 A I H >X S+ 0 0 15 4 0 III
58 58 A R T 3< S+ 0 0 104 4 0 RRR
59 59 A N T <4 S+ 0 0 134 4 0 NNN
60 60 A N T <4 S+ 0 0 116 4 0 NNN
61 61 A A < 0 0 43 4 0 AAA
62 62 A S 0 0 116 4 0 SSS
## SEQUENCE PROFILE AND ENTROPY
SeqNo PDBNo V L I M F W Y G A P S T C H R K Q E N D NOCC NDEL NINS ENTROPY RELENT WEIGHT
1 1 A 0 0 0 100 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0.000 0 1.00
2 2 A 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 25 75 4 0 0 0.562 18 0.56
3 3 A 100 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4 0 0 0.000 0 1.00
4 4 A 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 100 0 0 4 0 0 0.000 0 1.00
5 5 A 0 0 0 0 100 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4 0 0 0.000 0 1.00
6 6 A 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 100 0 0 0 0 4 0 0 0.000 0 1.00
7 7 A 0 0 0 0 0 0 0 0 0 0 0 0 100 0 0 0 0 0 0 0 4 0 0 0.000 0 1.00
8 8 A 0 0 0 0 0 0 0 0 0 0 0 100 0 0 0 0 0 0 0 0 4 0 0 0.000 0 1.00
9 9 A 0 0 0 0 0 0 0 0 0 0 0 0 100 0 0 0 0 0 0 0 4 0 0 0.000 0 1.00
10 10 A 0 0 0 0 0 0 0 0 0 0 100 0 0 0 0 0 0 0 0 0 4 0 0 0.000 0 1.00
11 11 A 0 0 0 0 0 0 0 0 0 0 0 0 0 0 100 0 0 0 0 0 4 0 0 0.000 0 1.00
12 12 A 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 100 0 0 4 0 0 0.000 0 1.00
13 13 A 0 0 0 0 0 0 0 0 0 0 0 0 0 0 100 0 0 0 0 0 4 0 0 0.000 0 1.00
14 14 A 0 0 0 0 0 0 0 0 0 0 0 0 100 0 0 0 0 0 0 0 4 0 0 0.000 0 1.00
15 15 A 0 0 0 0 0 0 0 0 100 0 0 0 0 0 0 0 0 0 0 0 4 0 0 0.000 0 1.00
16 16 A 0 0 0 0 0 0 0 25 0 0 0 0 0 0 0 0 0 0 0 75 4 0 0 0.562 18 0.56
17 17 A 0 0 0 0 0 0 0 0 100 0 0 0 0 0 0 0 0 0 0 0 4 0 0 0.000 0 1.00
18 18 A 0 100 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4 0 0 0.000 0 1.00
19 19 A 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 100 0 0 0 0 4 0 0 0.000 0 1.00
20 20 A 0 0 0 0 0 0 0 0 0 0 0 100 0 0 0 0 0 0 0 0 4 0 0 0.000 0 1.00
21 21 A 0 100 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4 0 0 0.000 0 1.00
22 22 A 0 0 0 0 0 0 0 0 0 100 0 0 0 0 0 0 0 0 0 0 4 0 1 0.000 0 1.00
23 23 A 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 100 4 0 0 0.000 0 1.00
24 24 A 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 100 0 0 4 0 0 0.000 0 1.00
25 25 A 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 100 0 0 4 0 0 0.000 0 1.00
26 26 A 100 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4 0 0 0.000 0 1.00
27 27 A 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 100 4 0 0 0.000 0 1.00
28 28 A 0 0 0 0 0 0 0 0 0 0 100 0 0 0 0 0 0 0 0 0 4 0 0 0.000 0 1.00
29 29 A 0 0 100 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4 0 0 0.000 0 1.00
30 30 A 0 100 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4 0 0 0.000 0 1.00
31 31 A 0 0 0 0 0 0 0 0 75 0 0 25 0 0 0 0 0 0 0 0 4 0 0 0.562 18 0.63
32 32 A 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 100 0 0 4 0 0 0.000 0 1.00
33 33 A 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 25 0 75 4 0 0 0.562 18 0.72
34 34 A 0 0 0 0 0 0 0 100 0 0 0 0 0 0 0 0 0 0 0 0 4 0 0 0.000 0 1.00
35 35 A 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 100 0 0 4 0 0 0.000 0 1.00
36 36 A 0 0 100 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4 0 0 0.000 0 1.00
37 37 A 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 100 4 0 0 0.000 0 1.00
38 38 A 0 0 0 100 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4 0 0 0.000 0 1.00
39 39 A 0 0 0 0 0 0 0 0 0 0 0 0 0 100 0 0 0 0 0 0 4 0 0 0.000 0 1.00
40 40 A 0 0 0 0 0 0 0 0 0 0 0 0 100 0 0 0 0 0 0 0 4 0 0 0.000 0 1.00
41 41 A 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 100 4 0 0 0.000 0 1.00
42 42 A 0 0 0 0 0 0 100 0 0 0 0 0 0 0 0 0 0 0 0 0 4 0 0 0.000 0 1.00
43 43 A 0 0 0 0 0 0 0 0 0 0 0 0 100 0 0 0 0 0 0 0 4 0 0 0.000 0 1.00
44 44 A 0 0 0 0 0 0 0 100 0 0 0 0 0 0 0 0 0 0 0 0 4 0 0 0.000 0 1.00
45 45 A 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 100 0 4 0 0 0.000 0 1.00
46 46 A 0 0 0 0 0 0 0 0 0 0 0 0 0 100 0 0 0 0 0 0 4 0 0 0.000 0 1.00
47 47 A 0 0 0 0 0 0 100 0 0 0 0 0 0 0 0 0 0 0 0 0 4 0 0 0.000 0 1.00
48 48 A 0 100 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4 0 0 0.000 0 1.00
49 49 A 0 0 0 0 100 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4 0 0 0.000 0 1.00
50 50 A 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 100 0 4 0 0 0.000 0 1.00
51 51 A 0 0 0 0 0 0 0 0 100 0 0 0 0 0 0 0 0 0 0 0 4 0 0 0.000 0 1.00
52 52 A 0 0 0 100 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4 0 0 0.000 0 1.00
53 53 A 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 100 4 0 0 0.000 0 1.00
54 54 A 0 0 100 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4 0 0 0.000 0 1.00
55 55 A 0 0 0 0 0 0 0 0 100 0 0 0 0 0 0 0 0 0 0 0 4 0 0 0.000 0 1.00
56 56 A 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 100 0 0 4 0 0 0.000 0 1.00
57 57 A 0 0 100 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4 0 0 0.000 0 1.00
58 58 A 0 0 0 0 0 0 0 0 0 0 0 0 0 0 100 0 0 0 0 0 4 0 0 0.000 0 1.00
59 59 A 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 100 0 4 0 0 0.000 0 1.00
60 60 A 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 100 0 4 0 0 0.000 0 1.00
61 61 A 0 0 0 0 0 0 0 0 100 0 0 0 0 0 0 0 0 0 0 0 4 0 0 0.000 0 1.00
62 62 A 0 0 0 0 0 0 0 0 0 0 100 0 0 0 0 0 0 0 0 0 4 0 0 0.000 0 1.00
## INSERTION LIST
AliNo IPOS JPOS Len Sequence
3 22 41 21 pDEEVDSILAEDXXXXALKTLPd
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